View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5862-Insertion-8 (Length: 382)
Name: NF5862-Insertion-8
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5862-Insertion-8 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 382
Target Start/End: Original strand, 9399531 - 9399909
Alignment:
| Q |
9 |
gcacgtgctcatagaagaaatattaactcatcaatgaatatttttcaaagggaatatttgttattcaaatccgtaccaattaagttttactgtggatcat |
108 |
Q |
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| T |
9399531 |
gcacgtgctcataaaagaaatatcaactcatcaatgaatatttttcaaagggaatatttgttattcaaatccgtaccaattaagttttactgtggatcat |
9399630 |
T |
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| Q |
109 |
ataaaattgtgtgttcaatata-----cttcaatatattgttcttnnnnnnnnnncttctagattttttagtaagaaaaaatccaaaacaaacgtttgag |
203 |
Q |
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| T |
9399631 |
ataaaattgtgtgttcaatataatatacttcaatatattgttcttaaaaaaata-cttctagattttttagtaagaaaaaatccaaaacaaacatttgag |
9399729 |
T |
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| Q |
204 |
cattgat-tacgaattgtacataaaagaaagaagtagcgataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaat |
302 |
Q |
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| T |
9399730 |
cattgatatacgacttgtacataaaagaaagaagtagagataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaat |
9399829 |
T |
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| Q |
303 |
tttaatcctcagcacaatcaagcaatatatcaagaaagtctctgaattcagcaccctgctcacccttattttccttcctt |
382 |
Q |
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| T |
9399830 |
tttgatcctcggcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttcctt |
9399909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 225 - 382
Target Start/End: Original strand, 9382283 - 9382440
Alignment:
| Q |
225 |
aaaagaaagaagtagcgataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttaatcctcagcacaatcaag |
324 |
Q |
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| T |
9382283 |
aaaagaaggaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaag |
9382382 |
T |
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| Q |
325 |
caatatatcaagaaagtctctgaattcagcaccctgctcacccttattttccttcctt |
382 |
Q |
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| T |
9382383 |
caatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttcctt |
9382440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 9382043 - 9382129
Alignment:
| Q |
9 |
gcacgtgctcatagaagaaatattaactcatcaatgaatatttttcaaagggaatatttgttattcaaatccgtaccaattaagttt |
95 |
Q |
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| T |
9382043 |
gcacgtgctcatagatgaaatatcaactcatcaatgaatatgtatcgaagggaatatttgttattcaaatccgtaccaattaagttt |
9382129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 23243915 - 23243822
Alignment:
| Q |
252 |
ttaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttaatcctcagcacaatcaagcaatatatcaagaaagtctct |
345 |
Q |
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| T |
23243915 |
ttaccataatcaaggccttaacgtgaaccctttgaattttcatctcagagctttcatcctcgacataatcaagtaggatatcaagaaagtctct |
23243822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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