View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5862-Insertion-9 (Length: 360)
Name: NF5862-Insertion-9
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5862-Insertion-9 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 360
Target Start/End: Complemental strand, 11861576 - 11861231
Alignment:
| Q |
9 |
catggaagagacttaagtttcggaatactccttaatgtaagagaacgaagttttttcagaccctcccattcagttttaaaattgtaattgcaaagatcaa |
108 |
Q |
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| T |
11861576 |
catggaagggacttaagttttggaatactccttaatgtaagagaacgaaggtttttcagaccctcccactcatttgga----tgt--ttgtcaagatcaa |
11861483 |
T |
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| Q |
109 |
gttcttcacatctttcaatagaaagtgattgaagcgaactcaataacttgaaactttgtggcagagactttaaattaaaacaatctctaatgtgaagttt |
208 |
Q |
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| T |
11861482 |
gttcttgacatctttcaatagtgagtgtttggagtgaactcaaagacttgaaaccttgtggtagagacgctaaattaaaacaatctctaatgtgaagttc |
11861383 |
T |
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| Q |
209 |
ctcaagtgaaatgaagtttttgagccatttttctgggggagaatgctcgatgcgctcaattaccatggacttcaatttggagaaggatttcaattgtgaa |
308 |
Q |
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| T |
11861382 |
ctcaagtgaaatgaagtttttgagccatctttctggtggagaatggtcgatgcgctcaactaccatggacttcaatttggagaagggtttcaattgtgaa |
11861283 |
T |
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| Q |
309 |
ttagaagttttgatttcaggagcagtgtaatccattgtatccttcattgata |
360 |
Q |
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| T |
11861282 |
ttagaagttttgatttcaggagcagcgtacttcattgtatccttcattgata |
11861231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 106 - 294
Target Start/End: Complemental strand, 11829359 - 11829171
Alignment:
| Q |
106 |
caagttcttcacatctttcaatagaaagtgattgaagcgaactcaataacttgaaactttgtggcagagactttaaattaaaacaatctctaatgtgaag |
205 |
Q |
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| T |
11829359 |
caagttgttcacatctttcaatagaaagtgatatgagtgagcttaaaaacttgaaaccttgtggtagagactccaaaataaaacaatctctaatgtgaag |
11829260 |
T |
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| Q |
206 |
tttctcaagtgaaatgaagtttttgagccatttttctgggggagaatgctcgatgcgctcaattaccatggacttcaatttggagaagg |
294 |
Q |
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| T |
11829259 |
ttcctcaagtgaaatgaagtttttaagccaactctctggtggagattggtcaatgcgctcaattaccatggacttcaatttcgagaagg |
11829171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 11900944 - 11901221
Alignment:
| Q |
11 |
tggaagagacttaagtttcggaatactccttaatgtaagagaacgaagttttttcagaccctcccattcagttttaaaattgtaattgcaaagatcaagt |
110 |
Q |
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| T |
11900944 |
tggaagggacttgagtttgggaatactccttaatgtaagagaacgaagctttctcagacccttccattcagttccggagatgtcg------agatcaagt |
11901037 |
T |
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| Q |
111 |
tcttcacatctttcaatagaaagtgattgaagcgaactcaataacttgaaactttgtggcagagactttaaattaaaacaatctctaatgtgaagtttct |
210 |
Q |
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| T |
11901038 |
tcttcacatctctcaatagtgagtgatatgagtgaactcaaagacttgaaaccttgtggtaaagactttaaaataacacaatctctaatgtgaagttcct |
11901137 |
T |
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| Q |
211 |
caagtgaaatgaagtttttgagccatttttctgggggagaatgctcgatgcgctcaattaccatggacttcaatttggagaagg |
294 |
Q |
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| T |
11901138 |
caagcgaaacaaagtttttaagccacctctctggtggagtttgctcaatacgctcaattaccattgatttcaatttggaaaagg |
11901221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 12040368 - 12040072
Alignment:
| Q |
12 |
ggaagagacttaagtttcggaatactccttaatgtaagagaacgaagttttttcagaccctcccattcagttttaaaattgtaattgcaaagatcaagtt |
111 |
Q |
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| T |
12040368 |
ggaagggacttgagatttggaatactccttaatgtaagagaacgaaggtttatcagaccctcccactcatttgggga---ggactc---aagatcaagtt |
12040275 |
T |
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| Q |
112 |
cttcacatctttcaatagaaagtgattgaagcgaactcaataacttgaaactttgtggcagagactttaaattaaaacaatctctaatgtgaagtttctc |
211 |
Q |
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| T |
12040274 |
gttgacatctttcaatagtgagtgtttcgagtgaactcaaagaccggaaaccttcaggtagagacttcaaatggaaacaatctcgaatgtgaagttcctt |
12040175 |
T |
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| Q |
212 |
aagtgaaatgaagtttttgagccatttttctgggggagaatgctcgatgcgctcaattaccatggacttcaatttggagaaggatttcaattgtgaatta |
311 |
Q |
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| T |
12040174 |
aagtgaaatgaagtttttaagccatctcttcggtggagattggtcaatacgctcaattaccatggacttcaatttggagaagggttgtgattgtgaatta |
12040075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 11829477 - 11829404
Alignment:
| Q |
9 |
catggaagagacttaagtttcggaatactccttaatgtaagagaacgaagttttttcagaccctcccattcagt |
82 |
Q |
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| T |
11829477 |
catggaagggacttcagttttggaatactccttaatgtaagagattgaaggtttttcagaccctcccattcagt |
11829404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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