View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5862_high_4 (Length: 307)
Name: NF5862_high_4
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5862_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 31078102 - 31078394
Alignment:
| Q |
1 |
gaaattctcaaagagattaccggaaaatcagaaatagttagttacgatgaggtgaaggatatggtttatactcatgcgtcgttatgcgagagtatgagac |
100 |
Q |
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| T |
31078102 |
gaaattctcaaagagattaccggaaaatcagaaatagttagttacgatgaggtgaaggatatggtttatactcatgcgtcgttatgcgagagtatgagac |
31078201 |
T |
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| Q |
101 |
tttatcctccagttccagtggatactaaagaagcagcgtacgatgatgttttgccagatggaacttttgtgaagaaagggtggagagtggcgtatcatat |
200 |
Q |
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| T |
31078202 |
tttatcctccagttccagtggatactaaagaagcagcgtacaatgatgttttgccagatggaacttttgtgaagaaagggtggagagtggcgtatcatat |
31078301 |
T |
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| Q |
201 |
atatgctatgggaaggtcagagaaaatatggggacttgattgggctgagtttcgaccggagaggtggttgagtcaagatgaggatgggaagtg |
293 |
Q |
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| T |
31078302 |
atatgctatgggaaggtcggagaaaatatggggacttgattgggctgagtttcgaccggagaggtggttgagtcaagatgaggatgggaagtg |
31078394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 4 - 287
Target Start/End: Original strand, 31132131 - 31132414
Alignment:
| Q |
4 |
attctcaaagagattaccggaaaatcagaaatagttagttacgatgaggtgaaggatatggtttatactcatgcgtcgttatgcgagagtatgagacttt |
103 |
Q |
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||||| ||||||||||| |||||||| ||||||||| |||||||||||||| |||||||||| |||||||| ||||||||||||||||||||| | |
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| T |
31132131 |
attcttaaagagattactagaaaatcaatgatagttagtaacgatgaggtgaagaatatggtttacactcatgcatcgttatgcgagagtatgagaatgg |
31132230 |
T |
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| Q |
104 |
atcctccagttccagtggatactaaagaagcagcgtacgatgatgttttgccagatggaacttttgtgaagaaagggtggagagtggcgtatcatatata |
203 |
Q |
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| T |
31132231 |
accctccagtttcagtggatgctaaggaagcagcctacgatgatgttttgccagatggaacattagtgaagaaagggtggatagttgcgtatcatgtata |
31132330 |
T |
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| Q |
204 |
tgctatgggaaggtcagagaaaatatggggacttgattgggctgagtttcgaccggagaggtggttgagtcaagatgaggatgg |
287 |
Q |
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| T |
31132331 |
tgttatgggaaggtctgagaaaatatggggatccgattgggctgagttttgacctgagaggtggttgagtcgagctgacgatgg |
31132414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 22 - 293
Target Start/End: Original strand, 31127441 - 31127712
Alignment:
| Q |
22 |
ggaaaatcagaaatagttagttacgatgaggtgaaggatatggtttatactcatgcgtcgttatgcgagagtatgagactttatcctccagttccagtgg |
121 |
Q |
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|||||||| |||| |||| |||| |||||||||||||||||||||| ||||||||| | ||||| |||||||||||||| |||||||| ||||| |||| |
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| T |
31127441 |
ggaaaatcggaaacggttaattacaatgaggtgaaggatatggtttacactcatgcggctttatgtgagagtatgagactgtatcctccggttcccgtgg |
31127540 |
T |
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| Q |
122 |
atactaaagaagcagcgtacgatgatgttttgccagatggaacttttgtgaagaaagggtggagagtggcgtatcatatatatgctatgggaaggtcaga |
221 |
Q |
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|| ||| ||||| || | || || |||||||| ||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||| || |
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| T |
31127541 |
atggtaaggaagcggcttgtgacgacgttttgccggatggaactttagtgaagaaagggtggagggtgacatatcatatatatgctatgggaaggtccga |
31127640 |
T |
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| Q |
222 |
gaaaatatggggacttgattgggctgagtttcgaccggagaggtggttgagtcaagatgaggatgggaagtg |
293 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||| ||||| ||||| |
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| T |
31127641 |
gaaaatatggggacccgattgggctgagtttcgacctgagagatggttgagtcaagttgatgatggaaagtg |
31127712 |
T |
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