View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5862_high_5 (Length: 267)
Name: NF5862_high_5
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5862_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 22042553 - 22042295
Alignment:
| Q |
1 |
cacacaagataatgatactagtatcttcaatgagatttcggtttgtatttcttgagcaaatgtggaactcaatttgtgctttgttacagatagtgcaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22042553 |
cacacaagataatgatactagtatcttcaatgagatttcggtttgtatttcttgagcaaatgtggaactcaatttgtgctttgttacagatagtgcaaat |
22042454 |
T |
|
| Q |
101 |
actacaaccatgagaaaagcagattccgcggtttattcaaaatttgtaagcaactcatcttcttttcctttaagatccataaaccactttcctgtgtcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22042453 |
actacaaccatgagaaaagcagattccgcggttttttcaaaatttgtaagcaactcatcttcttttcctttaagatccat-aaccactttcctgtgtcca |
22042355 |
T |
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| Q |
201 |
aagtaaatatcgcgacagtattcccatataagattctccactatattcttattttcttcg |
260 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22042354 |
aagtaaatatcgcgatagtattcccatataagattctccactatattcttattttcttcg |
22042295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 2424863 - 2425121
Alignment:
| Q |
1 |
cacacaagataatgatactagtatcttcaatgagatttcggtttgtatttcttgagcaaatgtggaactcaatttgtgctttgttacagatagtgcaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
2424863 |
cacacaagataatgatactagtatcttcaatgagacttcggtttgtatttcttgagcaaatttggaactcaatttgtgctttgttacagctagtgcaaat |
2424962 |
T |
|
| Q |
101 |
actacaaccatgagaaaagcagattccgcggtttattcaaaatttgtaagcaactcatcttcttttcctttaagatccataaaccactttcctgtgtcca |
200 |
Q |
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|||||||||||||||||||||||||||||| ||| ||| |||| ||||||||| ||||||||||||||||||||| | | | ||||||||||||||||| |
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| T |
2424963 |
actacaaccatgagaaaagcagattccgcgattttttcgaaatccgtaagcaacacatcttcttttcctttaagatgcgt-agccactttcctgtgtcca |
2425061 |
T |
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| Q |
201 |
aagtaaatatcgcgacagtattcccatataagattctccactatattcttattttcttcg |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2425062 |
aagtaaatatcgcgacagtattcccatataagattctccactatattcttattttcttcg |
2425121 |
T |
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