View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5862_low_1 (Length: 424)
Name: NF5862_low_1
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5862_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 227 - 410
Target Start/End: Original strand, 52273355 - 52273538
Alignment:
| Q |
227 |
ccgcgaagaagtctctgagactcagctcgaagctgtttgagattttcccttctttcctgttaaatcggtgaatctacaaattaataaaatcaataacaaa |
326 |
Q |
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| T |
52273355 |
ccgcgaagaagtctctgagactcagctcgaagctgtttgagattttcccttctttcctgttaaatcggtgaatctacaaattaataaaatcaataacaaa |
52273454 |
T |
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| Q |
327 |
ttgtataaaaagaattcactggaaaacgcatacaaaccttctcggcttttcttttattggagatagattctttaagcttcttct |
410 |
Q |
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| T |
52273455 |
ttgtataaaaataattcactggaaaacgcatacaaaccttctcggcttttcttttattggagatagattctttaagcttcttct |
52273538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 52273145 - 52273304
Alignment:
| Q |
10 |
aaaatattgatgtaaacccacttacttctttaaaaattctaatttcctctttcgaattttatccagtatagacgaaataggcttctgaaccagaggaaca |
109 |
Q |
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| T |
52273145 |
aaaatattgatgtaaacccacttacttctttaaaaattctaatttcctctttcgaattttatccagtatagacgaaataggcttctgaaccagaggaaca |
52273244 |
T |
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| Q |
110 |
ggtttaaatgcagcatctcttgtttctaaacaaaacacattaaactatgtgagttattgg |
169 |
Q |
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| T |
52273245 |
ggtttaaatgcagcatctcttgtttctaaacaaaacacattaaactatgtgagttattgg |
52273304 |
T |
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