View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5862_low_2 (Length: 371)
Name: NF5862_low_2
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5862_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 22042518 - 22042712
Alignment:
| Q |
1 |
atctcattaaagatacgagtttcagtatcttgtgtgtaatatttgcgccatgtgcgcgtgccagagtagatggaaaccattcgcaaggtaattgcaattg |
100 |
Q |
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| T |
22042518 |
atctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaaccattcgcaaggtaactgcaattg |
22042617 |
T |
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| Q |
101 |
tta-gaagaatgagaattcttgtacattttttgtgaactccataccgtcttatggtgacttgacaaatgggccaggtatgatttattcaattgca |
194 |
Q |
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| T |
22042618 |
ttaagaagaatgagaatgcttgtacattttttgtgaactccataccgtcttatggtgacttgacaaatgggccaggtatgatttattcaattgca |
22042712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 22042756 - 22042871
Alignment:
| Q |
238 |
ataagattctatattcttctagaccagaaaacgaaatacttttggtccaaggatgatgtacaaacagcccgtgttttgttttacctacgagtcattccaa |
337 |
Q |
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| T |
22042756 |
ataagattctatgttcttctagaccagaaaacgaaatacttttggtccaaggatgaagtacaaacagcccgtgttttgctttacctacgagtcattccaa |
22042855 |
T |
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| Q |
338 |
ctttgattgagtgttt |
353 |
Q |
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| T |
22042856 |
ctttgattgagtgttt |
22042871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 2424897 - 2424704
Alignment:
| Q |
2 |
tctcattaaagatacgagtttcagtatcttgtgtgtaatatttgcgccatgtgcgcgtgccagagtagatggaaaccattcgcaaggtaattgcaattgt |
101 |
Q |
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| T |
2424897 |
tctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgttcgcttgccagagtatatggaaaccattcgcaaggtaattgcaagtgt |
2424798 |
T |
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| Q |
102 |
tag-aagaatgagaattcttgtacattttttgtgaactccataccgtcttatggtgacttgacaaatgggccaggtatgatttattcaattgca |
194 |
Q |
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| T |
2424797 |
taacaagaatgagaatgcttgtaccttttttgtgaactccataccgtcttatggcgacttgacaaatgggccaggtatgatttattcaattgca |
2424704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 2424663 - 2424548
Alignment:
| Q |
238 |
ataagattctatattcttctagaccagaaaacgaaatacttttggtccaaggatgatgtacaaacagcccgtgttttgttttacctacgagtcattccaa |
337 |
Q |
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|||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
2424663 |
ataagattatatgttcttctagaccagaaaaccaaatacttttggtccaaggatgaagtgcaaacagcccgtgttttgttttacctacgagtcattccaa |
2424564 |
T |
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| Q |
338 |
ctttgattgagtgttt |
353 |
Q |
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|||||||||||||||| |
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| T |
2424563 |
ctttgattgagtgttt |
2424548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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