View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5862_low_3 (Length: 361)
Name: NF5862_low_3
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5862_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 135 - 341
Target Start/End: Original strand, 1550084 - 1550290
Alignment:
| Q |
135 |
gtgtaatgaaagcacttacagaaggaaacacagctttgggagcatcttcaccggcataaacagctttgcaagtatgtgaacccaaatcaattactatagc |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1550084 |
gtgtaatgaaagcacttacagaaggaaacacagctttgggagcatcttcaccggcataaacagctttgcaagtatgtgaacccaaatcaattactatagc |
1550183 |
T |
|
| Q |
235 |
tgaaacttcatttgaaaattcaacaaaatgaacaatgttaagaactatcagaacaataagagtaataggaagaaaacataacttgttattgcactcacca |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1550184 |
tgaaacttcatttgaaaattcaacaaaatgaacaatgttaagaactatcagaacaataagagtaataggaagaaaacataacttgttattgcactcacca |
1550283 |
T |
|
| Q |
335 |
ccgccgt |
341 |
Q |
| |
|
||||||| |
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|
| T |
1550284 |
ccgccgt |
1550290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 135 - 295
Target Start/End: Complemental strand, 23022935 - 23022775
Alignment:
| Q |
135 |
gtgtaatgaaagcacttacagaaggaaacacagctttgggagcatcttcaccggcataaacagctttgcaagtatgtgaacccaaatcaattactatagc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||||| ||||||||||||||| |
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| T |
23022935 |
gtgtaatgaaagcacttacagaaggaaacacagctttgggagcatcttcaccagcataaccagctttacacgtatgtgaacccagatcaattactatagc |
23022836 |
T |
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| Q |
235 |
tgaaacttcatttgaaaattcaacaaaatgaacaatgttaagaactatcagaacaataaga |
295 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23022835 |
tgaaacttcatctgaaaattcaacaaaatgaacaatgttaagaactatcagaacaataaga |
23022775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 1549982 - 1550026
Alignment:
| Q |
33 |
atgaacggcaaaacaataaagctgaaagcagataataataacaat |
77 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1549982 |
atgaacggcaaaacaataaagctgaaagcagataataataacaat |
1550026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 135 - 336
Target Start/End: Complemental strand, 27998026 - 27997823
Alignment:
| Q |
135 |
gtgtaatgaaagcacttacagaaggaaacacagctttgggagcatcttcaccggcataaacagctttgcaagtatgtgaacccaaatcaattactatagc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| ||||||||||||||| |
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| T |
27998026 |
gtgtaatgaaagcacttacagaaggaaacacagctttgggagcatcttcaccagcataaccagctttacaagtatgtgaacccagatcaattactatagc |
27997927 |
T |
|
| Q |
235 |
tgaaacttcatttgaaaattcaacaaaatgaacaatgttaagaactatcagaacaata--agagtaataggaagaaaacataacttgttattgcactcac |
332 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| ||| |||||||| |
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|
| T |
27997926 |
tgaaacttcatctgaaaattcaacaaaatgaacaatgttaagaactatcagaacaataagagagtaataagaagataacataactcgtttccgcactcac |
27997827 |
T |
|
| Q |
333 |
cacc |
336 |
Q |
| |
|
|||| |
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|
| T |
27997826 |
cacc |
27997823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 135 - 341
Target Start/End: Complemental strand, 28005366 - 28005158
Alignment:
| Q |
135 |
gtgtaatgaaagcacttacagaaggaaacacagctttgggagcatcttcaccggcataaacagctttgcaagtatgtgaacccaaatcaattactatagc |
234 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
28005366 |
gtgtaatgaacacacttacagaaggaaacacagctttgggagcatcttcaccggcataaccagctttacaggtatgtgaacccaaatcaattactatagc |
28005267 |
T |
|
| Q |
235 |
tgaaacttcatttgaaaattcaacaaaatgaacaatgttaagaactatcagaacaata--agagtaataggaagaaaacataacttgttattgcactcac |
332 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||||| |||| || ||||| |||| ||||||| | ||||||||||||| ||||| | |||||||| |
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|
| T |
28005266 |
tgaaacttcatctgcaaattcaacaaaacaaacaatgttgagaagtagcagaagaataagagagtaagaagaagaaaacataaattgttctcgcactcac |
28005167 |
T |
|
| Q |
333 |
caccgccgt |
341 |
Q |
| |
|
| ||||||| |
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|
| T |
28005166 |
ccccgccgt |
28005158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 27998104 - 27998072
Alignment:
| Q |
45 |
acaataaagctgaaagcagataataataacaat |
77 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |
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|
| T |
27998104 |
acaataaagctgaaagcagataataataccaat |
27998072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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