View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5863-Insertion-4 (Length: 740)
Name: NF5863-Insertion-4
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5863-Insertion-4 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 278 - 740
Target Start/End: Complemental strand, 3239275 - 3238815
Alignment:
| Q |
278 |
ctcgatataggatgtgcatttaactttagataagatttgtggatgatacaaaacccatatggtgttttataccaaaaatgtaaaactaattgttattatg |
377 |
Q |
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| T |
3239275 |
ctcgatataggatgtgtatttac--ttagataagatttgtggatgatacaaaacccatatggtgttttataccaaaaatgtaaaactaattgttattatg |
3239178 |
T |
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| Q |
378 |
aaacataccttttgcaattgttagcaaggcactgaattgatttgtaagagccaactcaagatttacatacatatcttctccaccctttaggaaaattaaa |
477 |
Q |
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| T |
3239177 |
aaacataccttttgcaattgttagcaaggcactgaattgatttgtaagagccaactcaagatttacatacatatcttctccaccctttaggaaaattaaa |
3239078 |
T |
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| Q |
478 |
attgtcaacattcaaataaattgacaatgacaagtaacctgggttgttcttgctcccttttggattcataacaatccgcctgnnnnnnntatcgaaaaca |
577 |
Q |
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| T |
3239077 |
attgtcaacattcaaataaattgacaatgacaagtaacctgggttgttcttgctcccttttggattcataacaatccgcctgaaaaaaatatcgaaaaca |
3238978 |
T |
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| Q |
578 |
tacaaaaattgagcacatgacaatgatgatatgtgtatgtagtaaattggaatttactcagagcatgaatagcctttgaggaagaaactttctgagtacg |
677 |
Q |
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| T |
3238977 |
tacaaaaattgagcacatgacaatgatgatatgtgtatgtagtaaattggaatttactcagagcatgaatagcctttgaggaagaaactttctgagtacg |
3238878 |
T |
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| Q |
678 |
tcttagaatcacatttggagaagttattaatcgtccatgtgaattgctcaatcgtccctgggg |
740 |
Q |
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| T |
3238877 |
tcttagaatcacatttggagaagttattaatcgtccatgtgaattgctcaatcgtccctgggg |
3238815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 351 - 559
Target Start/End: Complemental strand, 3243348 - 3243141
Alignment:
| Q |
351 |
aaaaatgtaaaactaattgttattatgaaacataccttttgcaattgttagcaaggcactgaattgatttgtaagagccaactcaagatttacatacata |
450 |
Q |
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| T |
3243348 |
aaaaatgtaaaagcaattgttaatatgaaacatacctttgacaattgtgagcaaggcattggcttgattagtaagagccaactcaagattta----cata |
3243253 |
T |
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| Q |
451 |
tcttctccaccctttaggaaaat---taaaattgtcaacattcaaataaattgacaatgacaagtaacctgggttgttcttgctcccttttggattcata |
547 |
Q |
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| T |
3243252 |
tcttttccagtctttagaaaaatcagtaatatcagcaacaaccgaaagaattgataatgacaagtaaccagagttgttctcgttcccttttggattcata |
3243153 |
T |
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| Q |
548 |
acaatccgcctg |
559 |
Q |
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| T |
3243152 |
acaatccgcctg |
3243141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 668 - 740
Target Start/End: Complemental strand, 3243022 - 3242950
Alignment:
| Q |
668 |
tctgagtacgtcttagaatcacatttggagaagttattaatcgtccatgtgaattgctcaatcgtccctgggg |
740 |
Q |
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| T |
3243022 |
tctgagtacatctgagaatcacacttagagaagttcttaatcgtccatgtgaattgctcaatcgtccatgggg |
3242950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 3243571 - 3243501
Alignment:
| Q |
36 |
catccaaatgtacgaacttgtcgacactccaataataattactttctttgaactcctgttcggtttctgat |
106 |
Q |
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| T |
3243571 |
catccaaatgtatgaacttgtcgacactccagcaataattacttgcattgagctcctgttcagtttctgat |
3243501 |
T |
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