View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5863-Insertion-6 (Length: 585)
Name: NF5863-Insertion-6
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5863-Insertion-6 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| |
|
| [»] chr7 (12 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
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| [»] chr1 (3 HSPs) |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0172 (1 HSPs) |
| | |
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| [»] scaffold0655 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 9 - 585
Target Start/End: Original strand, 3509362 - 3509937
Alignment:
| Q |
9 |
aagtatactttttgaacttaagaatgattatttgaaagcattgttcatttacgtaatgagnnnnnnnnnnngtcgatttaggaattgatctttgggtaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
3509362 |
aagtatactttttgaacttaagaaagattatttgaaagcattgttcatttacgtaatgagttttttt----gttgatttaggaattgatctttgggtaaa |
3509457 |
T |
|
| Q |
109 |
ttttctttgaaaacgtgattgttggaggtacactactaactcagttgagtgaaacaaattttatcatcaaatacttaaaaatattatcttacatgtcttt |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3509458 |
ttttctttgaaaatgtgattgttggaggtacactactaactgagttgagtgaaacaagttttatcatcaaatacttaaaag-attatcttacatgtcttt |
3509556 |
T |
|
| Q |
209 |
accttttggacttaattttaaagaggtagtc-------atatctaagtaaaatattcatattttgattagaacccttagccaaacccttcagccttgatt |
301 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
3509557 |
accttttggacttaattttacagaagtagtcgttgtgaatatctaagtaaaatattcatattttgattagattccttagccaaacccttcagccttgaat |
3509656 |
T |
|
| Q |
302 |
gttaaaatgttagttagttttggtattaagaatcagtggtgaattattttgtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaag |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3509657 |
gttaaaatgttagttagttttggtattaagaattagtggtgaattattttgtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaag |
3509756 |
T |
|
| Q |
402 |
agttcttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttg |
501 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| ||||||| |||||| || ||||| ||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
3509757 |
agttcttggtgcaaaggtaagggcatcattccatgcgcttccgtatgtgtatgtgtga--atatttgtgttgtgatggttaccatagtgttgttgttttg |
3509854 |
T |
|
| Q |
502 |
aagtaaatgctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
585 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
3509855 |
aagtgaatgctatgtgctatatattggtgatgtgataattaccttggtgttgttgttttggcatgaatattatgt-tattattt |
3509937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 415 - 585
Target Start/End: Original strand, 24540576 - 24540746
Alignment:
| Q |
415 |
aaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctat |
514 |
Q |
| |
|
|||||||||| ||||||||| |||||||| || || || ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
24540576 |
aaggtaagggtatcactccacacgcttccgtacgtttatgtgtgaatatatttgtgttgtgatgattatcatattgttgttgttttgaagtgaatgctat |
24540675 |
T |
|
| Q |
515 |
gtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
585 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24540676 |
gttttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
24540746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 455 - 560
Target Start/End: Original strand, 15277855 - 15277960
Alignment:
| Q |
455 |
tgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctatgtgctatatattggtgatgtgataattatcttggtggtgt |
554 |
Q |
| |
|
|||| ||||||||||||| |||| |||| |||| | ||||||||| ||| | ||||||||||| |||||||||||| | ||||||||||||||||||||| |
|
|
| T |
15277855 |
tgtgtatatatttgtgttttgataattaacataatattgttgtttggaaatgaatgctatgtgttatatattggtggtatgataattatcttggtggtgt |
15277954 |
T |
|
| Q |
555 |
tgtttt |
560 |
Q |
| |
|
|||||| |
|
|
| T |
15277955 |
tgtttt |
15277960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 532 - 576
Target Start/End: Original strand, 8910139 - 8910183
Alignment:
| Q |
532 |
tgtgataattatcttggtggtgttgttttggcatgaatattatgt |
576 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
8910139 |
tgtgataagtatctttgtggggttgttttggcatgaatactatgt |
8910183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 9 - 585
Target Start/End: Original strand, 9892 - 10464
Alignment:
| Q |
9 |
aagtatactttttgaacttaagaatgattatttgaaagcattgttcatttacgtaatgagnnnnnnnnnnngtcgatttaggaattgatctttgggtaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
9892 |
aagtatactttttgaacttaagaaagattatttgaaagcattgttcatttacgtaatgagttttttt----gttgatttaggaattgatctttgggtaaa |
9987 |
T |
|
| Q |
109 |
ttttctttgaaaacgtgattgttggaggtacactactaactcagttgagtgaaacaaattttatcatcaaatacttaaaaatattatcttacatgtcttt |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
9988 |
ttttctttgaaaatgtgattgttggaggtacactactaactgagttgagtgaaacaagttttatcatcaaatacttaaaag-atcatcttacatgtcttt |
10086 |
T |
|
| Q |
209 |
accttttggacttaattttaaagaggtagtc-------atatctaagtaaaatattcatattttgattagaacccttagccaaacccttcagccttgatt |
301 |
Q |
| |
|
| |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | |
|
|
| T |
10087 |
atcttttggacttaattttacagaagtagtcgttgtgaatatctaagtaaaatattcatattttgattagattccttagccaaaccct---gccttgaat |
10183 |
T |
|
| Q |
302 |
gttaaaatgttagttagttttggtattaagaatcagtggtgaattattttgtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaag |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10184 |
gttaaaatgttagttagttttggtattaagaattagtggtgaattattttgtgaaggtatagacgtagtggaacaaagaatgtttcatgggaattttaag |
10283 |
T |
|
| Q |
402 |
agttcttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttg |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | ||| || ||| || ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10284 |
agttcttgttgcaaaggtaagggcatcactccacgcacgtccgtacgtgtatgtgtga--ctatttgtgttgtgatgattatcatagtgttgttgttttg |
10381 |
T |
|
| Q |
502 |
aagtaaatgctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
585 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10382 |
aagtgaatgctatgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgt-tattattt |
10464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 9 - 585
Target Start/End: Original strand, 16421180 - 16421752
Alignment:
| Q |
9 |
aagtatactttttgaacttaagaatgattatttgaaagcattgttcatttacgtaatgagnnnnnnnnnnngtcgatttaggaattgatctttgggtaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
16421180 |
aagtatactttttgaacttaagaaagattatttgaaagcattgttcatttacgtaatgagttttttt----gttgatttaggaattgatctttgggtaaa |
16421275 |
T |
|
| Q |
109 |
ttttctttgaaaacgtgattgttggaggtacactactaactcagttgagtgaaacaaattttatcatcaaatacttaaaaatattatcttacatgtcttt |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
16421276 |
ttttctttgaaaatgtgattgttggaggtacactactaactgagttgagtgaaacaagttttatcatcaaatacttaaaag-atcatcttacatgtcttt |
16421374 |
T |
|
| Q |
209 |
accttttggacttaattttaaagaggtagtc-------atatctaagtaaaatattcatattttgattagaacccttagccaaacccttcagccttgatt |
301 |
Q |
| |
|
| |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | |
|
|
| T |
16421375 |
atcttttggacttaattttacagaagtagtcgttgtgaatatctaagtaaaatattcatattttgattagattccttagccaaaccct---gccttgaat |
16421471 |
T |
|
| Q |
302 |
gttaaaatgttagttagttttggtattaagaatcagtggtgaattattttgtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaag |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16421472 |
gttaaaatgttagttagttttggtattaagaattagtggtgaattattttgtgaaggtatagacgtagtggaacaaagaatgtttcatgggaattttaag |
16421571 |
T |
|
| Q |
402 |
agttcttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttg |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | ||| || ||| || ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16421572 |
agttcttgttgcaaaggtaagggcatcactccacgcacgtccgtacgtgtatgtgtga--ctatttgtgttgtgatgattatcatagtgttgttgttttg |
16421669 |
T |
|
| Q |
502 |
aagtaaatgctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
585 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16421670 |
aagtgaatgctatgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgt-tattattt |
16421752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 407 - 585
Target Start/End: Complemental strand, 21268354 - 21268176
Alignment:
| Q |
407 |
ttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagta |
506 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||| || ||| || |||| |||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
21268354 |
ttgttgcaaaggtaagggcatcacttcacgcgcttccgtacgtgtatgtgtgtatatatttgtgttgtgatgattattatagtgttgttgttttgaaatg |
21268255 |
T |
|
| Q |
507 |
aatgctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
585 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| |
|
|
| T |
21268254 |
agtgctatgtgctatatattggtgatgtgataattatcttggtgatgttgtttttgcatgaatattatgggtattattt |
21268176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 276 - 581
Target Start/End: Original strand, 28392746 - 28393046
Alignment:
| Q |
276 |
cttagccaaacccttcagccttgattgttaaaatgttagttagttttggtattaagaatcagtggtgaattattttgtgaaggtatagacgtagtggaac |
375 |
Q |
| |
|
|||||||| |||| ||||||| || ||||||| || | ||||||||||| ||||||| | ||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
28392746 |
cttagccatacccatcagcctagaatgttaaagtggtggttagttttggcattaagacttagtggtggattattttgtgaaggtagagacgtagtggaac |
28392845 |
T |
|
| Q |
376 |
aaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtg |
475 |
Q |
| |
|
|||||| |||||||||||||||||| |||| ||||| |||| ||| ||||||||||| || ||| | |||| | || |||||||||| || || |
|
|
| T |
28392846 |
aaagaa-gcttcatgggaattttaaaagtttctgttgtgaaggcaagagcatcactccacgcgtttcggtgtgtg----tatgtatatatttgttttttg |
28392940 |
T |
|
| Q |
476 |
atgattatcatagtgttgttgttttgaagtaaatgctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatg |
575 |
Q |
| |
|
|| ||||| ||| ||||||||||||||| | |||| |||||| |||||||||||| |||| ||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
28392941 |
ataattattataatgttgttgttttgaaatgaatgttatgtgttatatattggtggtgtggtaattctcttggtgttgttgttttggtatgaatattatg |
28393040 |
T |
|
| Q |
576 |
tgtatt |
581 |
Q |
| |
|
|||||| |
|
|
| T |
28393041 |
tgtatt |
28393046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 276 - 585
Target Start/End: Original strand, 28383870 - 28384174
Alignment:
| Q |
276 |
cttagccaaacccttcagccttgattgttaaaatgttagttagttttggtattaagaatcagtggtgaattattttgtgaaggtatagacgtagtggaac |
375 |
Q |
| |
|
|||||||||| || ||||||| || ||||||| || | ||||||||||| ||||||| | ||||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
28383870 |
cttagccaaatccatcagcctagaatgttaaagtggtggttagttttggcattaagacttagtggtggattattttgtgaacgtagagacgtagtggaac |
28383969 |
T |
|
| Q |
376 |
aaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtg |
475 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| |||||||| | ||||||||| | ||| || ||| | || |||||| |||||| || |
|
|
| T |
28383970 |
aaagaatgcttcatgggaattttaaaagtttccattgtgaaggtaagagtatcactccacgcatttcggtacgtg----tatgtatatatctgtgttttg |
28384065 |
T |
|
| Q |
476 |
atgattatcatagtgttgttgttttgaagtaaatgctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatg |
575 |
Q |
| |
|
|| ||||||||| ||||||||||||||| | |||| |||||| |||||||| ||| |||| |||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
28384066 |
ataattatcataatgttgttgttttgaaatgaatgttatgtgttatatattcgtggtgtggtaatta-cttggtggtgttgttttggcatgaacattatg |
28384164 |
T |
|
| Q |
576 |
tgtattattt |
585 |
Q |
| |
|
|||||||||| |
|
|
| T |
28384165 |
tgtattattt |
28384174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 407 - 545
Target Start/End: Complemental strand, 48187508 - 48187370
Alignment:
| Q |
407 |
ttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagta |
506 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48187508 |
ttgttgtaaaggtaagggcatcactccacgcgcttccatacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtg |
48187409 |
T |
|
| Q |
507 |
aatgctatgtgctatatattggtgatgtgataattatct |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48187408 |
aatgctatgtgctatatattggtgatgtgataattatct |
48187370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 328 - 552
Target Start/End: Original strand, 36017792 - 36018017
Alignment:
| Q |
328 |
taagaatcagtggtgaattattttgtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcat |
427 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| |||||||| | |||| ||||| || ||||||||||||| || |||||||||||||||||| |
|
|
| T |
36017792 |
taagaattagtggtgaattattttgcgaaggtatagacatagtggaaaagagaactcttcagggaaattttaagagttgttattgcaaaggtaagggcat |
36017891 |
T |
|
| Q |
428 |
cactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatg-ctatgtgctatatatt |
526 |
Q |
| |
|
||||||| |||||| || ||| || |||| ||||| |||||||||||| ||||||||| || |||||||||||| | |||| |||||| |||||||| |
|
|
| T |
36017892 |
cactccacgtgcttccgtacgtgtatatgtgtatataattgtgttgtgataattatcatattggtgttgttttgaaatgaatgattatgtgttatatatt |
36017991 |
T |
|
| Q |
527 |
ggtgatgtgataattatcttggtggt |
552 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
36017992 |
ggtgttgtgataattatcttggtggt |
36018017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 415 - 578
Target Start/End: Complemental strand, 11283522 - 11283359
Alignment:
| Q |
415 |
aaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatg-cta |
513 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||| || |||| |||| |||||||||||| ||||||||| || |||||||| ||| | |||| || |
|
|
| T |
11283522 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtgtataattgtgttgtgataattatcataatgatgttgtttagaaatgaatgatta |
11283423 |
T |
|
| Q |
514 |
tgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgt |
578 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
11283422 |
tgtgttatatattggtgttgtgataattatcttggtggt-ttgctttggtatgaatattatgtgt |
11283359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 410 - 578
Target Start/End: Complemental strand, 12528861 - 12528693
Alignment:
| Q |
410 |
ttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaat |
509 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || ||| || |||| ||||| ||||||| |||| ||| ||||| || |||||||||||| | ||| |
|
|
| T |
12528861 |
ttgcaaaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgttatgataattgtcataatggtgttgttttgaaatgaat |
12528762 |
T |
|
| Q |
510 |
g-ctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgt |
578 |
Q |
| |
|
| |||||| |||||| || || ||||||||||||||||||||| ||| ||| | ||||||||||||||| |
|
|
| T |
12528761 |
gattatgtgttatataatgatgttgtgataattatcttggtggt-ttgcttttgtatgaatattatgtgt |
12528693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 537 - 585
Target Start/End: Complemental strand, 48186667 - 48186619
Alignment:
| Q |
537 |
taattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
585 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48186667 |
taattatcttggtgttgttgttttggcatgaatattatgtgtattattt |
48186619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 484
Target Start/End: Original strand, 16483965 - 16484042
Alignment:
| Q |
407 |
ttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatc |
484 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| || ||| || |||| |||||||||||||||||| |||||| |
|
|
| T |
16483965 |
ttgttgcgaaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatatatttgtgttgtgataattatc |
16484042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 519 - 571
Target Start/End: Original strand, 16484017 - 16484069
Alignment:
| Q |
519 |
tatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatat |
571 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
16484017 |
tatatatttgtgttgtgataattatcttggtggttttgtttcggcatgaatat |
16484069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 585
Target Start/End: Original strand, 28393053 - 28393090
Alignment:
| Q |
548 |
gtggtgttgttttggcatgaatattatgtgtattattt |
585 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
28393053 |
gtggtggtgttttggcatgaacattatgtgtattattt |
28393090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 83 - 578
Target Start/End: Complemental strand, 5537542 - 5537063
Alignment:
| Q |
83 |
gatttaggaattgatctttgggtaaattttctttgaaaacgtgattgttggaggtacactactaactcagttgagtgaaacaaattttatcatcaaatac |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
5537542 |
gatttaggaattgatctttgggtaaattttctttgaaaacgtgattgttg------------------agttgagtgaaacaagttttatcatcaaata- |
5537462 |
T |
|
| Q |
183 |
ttaaaaatattatcttacatgtctttaccttttggacttaattttaaagaggtagtc-------atatctaagtaaaatattcatattttgattagaacc |
275 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5537461 |
----aaagattatcttacatgtctttaccttttgaacttaattttaaagaagtagtcgttgtgaatatctaagtaaaatattcatattttgattagaacc |
5537366 |
T |
|
| Q |
276 |
cttagccaaacccttcagccttgattgttaaaatgttagttagttttggtattaagaatcagtggtgaattattttgtgaaggtatagacgtagtggaac |
375 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5537365 |
cttagccaaacccttcagccttgaatgttaaaatgttagttagttttggtattaagaattagtggtgaattattttgcgaaggtatagacgtagtggaac |
5537266 |
T |
|
| Q |
376 |
aaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtg |
475 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || ||| || |||| ||||| |||||| ||| |
|
|
| T |
5537265 |
aaagaatgattcctgggaattttaagagttcttgttgcaaaggtaacagcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtagtg |
5537166 |
T |
|
| Q |
476 |
atgattatcatagtgttgttgttttgaagtaaatg-ctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattat |
574 |
Q |
| |
|
|| ||||||||| || |||||||||||| | |||| |||||| |||||| ||||| ||||||||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
5537165 |
ataattatcataatggtgttgttttgaaatgaatgattatgtgttatatagtggtgttgtgataattatcttggtggt-ttgctttggtatgaatattat |
5537067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 414 - 585
Target Start/End: Original strand, 44668815 - 44668985
Alignment:
| Q |
414 |
aaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgcta |
513 |
Q |
| |
|
||||||||||||||||||| | ||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || |
|
|
| T |
44668815 |
aaaggtaagggcatcactctacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttt-gaagtgaatgtta |
44668913 |
T |
|
| Q |
514 |
tgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44668914 |
tgtgctatatattggtgatgtgataattatcttggtgttgttgttttggcatgaatattatgtgtattattt |
44668985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 460 - 578
Target Start/End: Complemental strand, 3897390 - 3897271
Alignment:
| Q |
460 |
atatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatg-ctatgtgctatatattggtgatgtgataattatcttggtggtgttgtt |
558 |
Q |
| |
|
||||| |||||||||||| ||||| | ||| |||||||||||| | |||| ||||||| || ||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
3897390 |
atataattgtgttgtgataattattttggtggtgttgttttgaaatgaatgactatgtgttacatatttgtgttgtgataattattttggtggtgttgtt |
3897291 |
T |
|
| Q |
559 |
ttggcatgaatattatgtgt |
578 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
3897290 |
ttggcatgaatatcatgtgt |
3897271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 5537587 - 5537537
Alignment:
| Q |
9 |
aagtatactttttgaacttaagaatgattatttgaaagcattgttcattta |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5537587 |
aagtatactttttgaacttaagaatgattatttgaaagcattgttgattta |
5537537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 408 - 567
Target Start/End: Original strand, 6818486 - 6818647
Alignment:
| Q |
408 |
tgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttg-ttttgaagta |
506 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| || ||| || | || |||||||||| ||||||| |||||||||||| ||||| ||||||| | |
|
|
| T |
6818486 |
tgttgtaaaggtaagggcatcactccacgcgcttatgtacgtgtatatttgtatatatttgtattgtgataattatcatagtggtgttgtttttgaaatg |
6818585 |
T |
|
| Q |
507 |
aatgctatgtgctatatattggtgatgtgataattat-cttggtggtgttgttttggcatga |
567 |
Q |
| |
|
|||| ||| || ||||| ||| || |||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
6818586 |
aatgttatctgttatatgttgttgttgtgataattatatttggtggttttgtcttggcatga |
6818647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 5e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 415 - 585
Target Start/End: Original strand, 15418853 - 15419023
Alignment:
| Q |
415 |
aaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctat |
514 |
Q |
| |
|
|||||||||||||||||||| |||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15418853 |
aaggtaagggcatcactccacacgcttccgtacgtatatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat |
15418952 |
T |
|
| Q |
515 |
gtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
585 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15418953 |
gttttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
15419023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 415 - 585
Target Start/End: Original strand, 15425870 - 15426040
Alignment:
| Q |
415 |
aaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctat |
514 |
Q |
| |
|
|||||||||||||||||||| |||||||| || || || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
15425870 |
aaggtaagggcatcactccacacgcttccgtacgtatatgtgtgaatatatttgtgttgtgatgattatcatagtattgttgttttgaagtgaatgctat |
15425969 |
T |
|
| Q |
515 |
gtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
585 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15425970 |
gttctatatattggtgatgtgataattagcttggtggtgttgttttggcatgaatattatatgtattattt |
15426040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 407 - 572
Target Start/End: Complemental strand, 28654579 - 28654414
Alignment:
| Q |
407 |
ttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagta |
506 |
Q |
| |
|
|||||| ||||||||||||||||||||| || |||| || ||| || |||| ||||| || ||||||||| ||||||||| || ||||||||||| | |
|
|
| T |
28654579 |
ttgttgtaaaggtaagggcatcactccacgcgtttccgtacgtgtatatgtgtatataattctgttgtgataattatcataatggggttgttttgaaatg |
28654480 |
T |
|
| Q |
507 |
aatg-ctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatatt |
572 |
Q |
| |
|
|||| |||||| |||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
28654479 |
aatgattatgtgttatatattggtgttgtgataattatcttggtggt-ttgctttggaatgaatatt |
28654414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 578
Target Start/End: Original strand, 52944820 - 52944934
Alignment:
| Q |
460 |
atatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctatgtgctatatattggtgatgtgataattatcttggtggtgttgttt |
559 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||||| | |||||||||| ||| ||||||| ||||||||||| ||||||||| || ||| |
|
|
| T |
52944820 |
atatatttgtgttgtgataattat-----tggtgttgttttgaaatgaatgctatgtattattaattggtgttgtgataattaccttggtggttttattt |
52944914 |
T |
|
| Q |
560 |
tggcatg-aatattatgtgt |
578 |
Q |
| |
|
| ||||| |||||||||||| |
|
|
| T |
52944915 |
tagcatgaaatattatgtgt |
52944934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 3e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 350 - 585
Target Start/End: Original strand, 18901833 - 18902068
Alignment:
| Q |
350 |
ttgtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccatacgcttccttatgt |
449 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | | |||| || |||||||| ||||||||||||||||| |||| |||| ||||||| || || |
|
|
| T |
18901833 |
ttgtgaaggtatagaggtagtggaacaaagacgggtgtatggaaacggtaagagttactgttgcaaaggtaagggtatcattccacgcgcttccgtacgt |
18901932 |
T |
|
| Q |
450 |
gcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctatgtgctatatattggtgatgtgataattatcttggt |
549 |
Q |
| |
|
| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18901933 |
gtatttgtgaatatatttgtgttgtgatgattattatagtgttgttgttttgaagtgaatgatatgtgctatatattggtgatgtgatagttatcttggt |
18902032 |
T |
|
| Q |
550 |
ggtgttgttttggcatgaatattatgtgtattattt |
585 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
18902033 |
gttgttgtttttgcatgaatattatgtgtattattt |
18902068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 415 - 578
Target Start/End: Original strand, 18153328 - 18153491
Alignment:
| Q |
415 |
aaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatg-cta |
513 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||| || |||| ||||| |||||| ||||| ||||||||| || |||||||||||| | |||| || |
|
|
| T |
18153328 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtggtgataattatcataatggtgttgttttgaaatgaatgatta |
18153427 |
T |
|
| Q |
514 |
tgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgt |
578 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
18153428 |
tgtgttatatattggtgttgtgataattatcttggtggt-ttgctttggtatgaatattatgtgt |
18153491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 350 - 514
Target Start/End: Complemental strand, 51783658 - 51783494
Alignment:
| Q |
350 |
ttgtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccatacgcttccttatgt |
449 |
Q |
| |
|
||||||||||||||| |||||||||||||| | | ||| ||| | |||||| | | |||||||||||| |||||||||||| ||||| || || |
|
|
| T |
51783658 |
ttgtgaaggtatagagatagtggaacaaagacggttgtatgagaactgtaagagctactattgcaaaggtaaaggcatcactccacgtgcttctgtacgt |
51783559 |
T |
|
| Q |
450 |
gcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctat |
514 |
Q |
| |
|
|| ||||||||||||| |||| | |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51783558 |
atatgtgtgaatatatttatgttataatgattattatagtgttgttgttttgaagtaaatgctat |
51783494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 3e-62; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 412 - 585
Target Start/End: Original strand, 1311404 - 1311577
Alignment:
| Q |
412 |
gcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgc |
511 |
Q |
| |
|
||||| ||||| | ||||||||| ||||||| || ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | |
|
|
| T |
1311404 |
gcaaatgtaagagtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattattatagtgttgttgttttgaagtgaatac |
1311503 |
T |
|
| Q |
512 |
tatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
585 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1311504 |
tatgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
1311577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 414 - 585
Target Start/End: Original strand, 19932666 - 19932837
Alignment:
| Q |
414 |
aaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgcta |
513 |
Q |
| |
|
||||||||||||||||||||| ||||||| || ||| || | ||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
19932666 |
aaaggtaagggcatcactccacgcgcttccgtacgtgtatttatgaatatatttgtgtcgtgatgattattatagtgttgttgttttgaagtgaatgcta |
19932765 |
T |
|
| Q |
514 |
tgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
585 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19932766 |
tgtgctatatattgctgatgtgatagttatcttggtggtggtgttttggcatgaatattatgtgtattattt |
19932837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 415 - 578
Target Start/End: Original strand, 3224669 - 3224833
Alignment:
| Q |
415 |
aaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctat |
514 |
Q |
| |
|
|||||||||||||||||||| || |||| || || || || |||||||||||||||||| |||| |||| || |||||||| ||| | |||| ||| |
|
|
| T |
3224669 |
aaggtaagggcatcactccacgcgtttccgtacatgtatatgattatatatttgtgttgtgataattagcatattgctgttgttt-gaaatgaatgttat |
3224767 |
T |
|
| Q |
515 |
gtgctata--tattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgt |
578 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
3224768 |
gtgctatatatattggtgttgtgataattatcttggtgttgttgttttgacatgaatattatgtgt |
3224833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 415 - 574
Target Start/End: Complemental strand, 11035057 - 11034898
Alignment:
| Q |
415 |
aaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgct-a |
513 |
Q |
| |
|
||||||||||||||||| || || |||| || || || |||| ||||| |||||||||||| ||||||||| || |||||||||||| | |||| | | |
|
|
| T |
11035057 |
aaggtaagggcatcacttcacgcgtttccgtacatgtatatgtgtatataattgtgttgtgataattatcataatgatgttgttttgaaatgaatgatta |
11034958 |
T |
|
| Q |
514 |
tgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattat |
574 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||| | ||| ||||| ||||||||||| |
|
|
| T |
11034957 |
tgtgttatatattggtgttgtgataattatcttggtgat-ttgctttggtatgaatattat |
11034898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 407 - 578
Target Start/End: Complemental strand, 34792 - 34620
Alignment:
| Q |
407 |
ttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagta |
506 |
Q |
| |
|
|||||| ||||||||||||||||||||| || |||| || ||| || ||| ||||| ||||||||||| ||||| | ||| || | ||||||| | |
|
|
| T |
34792 |
ttgttgtaaaggtaagggcatcactccacgcgtttccgtacgtgtatatgtatatataactgtgttgtgataattattttggtggtgctattttgaaatg |
34693 |
T |
|
| Q |
507 |
aatgct-atgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgt |
578 |
Q |
| |
|
|| | | ||||| | |||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
34692 |
aaggattatgtgttttatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgt |
34620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 7541 - 7650
Alignment:
| Q |
463 |
tatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttgg |
562 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||| | | |||||| ||| |||||||| ||| ||||||||||||||||| |||||||| |
|
|
| T |
7541 |
tatttgtgttgtgataattatcatggtgttgtt---ttgaaatg---gttatgtgttatgtattggtgttgtaataattatcttggtggttttgttttgc |
7634 |
T |
|
| Q |
563 |
catgaatattatgtgt |
578 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7635 |
catgaatattatgtgt |
7650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 512 - 578
Target Start/End: Complemental strand, 29963092 - 29963026
Alignment:
| Q |
512 |
tatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgt |
578 |
Q |
| |
|
|||||| | |||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
29963092 |
tatgtgttttatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgt |
29963026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 578
Target Start/End: Original strand, 2038873 - 2039102
Alignment:
| Q |
350 |
ttgtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccatacgcttccttatgt |
449 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||| | || | | |||||| || || ||| |||||||||| |||||||||| |||||| || | |
|
|
| T |
2038873 |
ttgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgtttttgtaaaggtaaggacatcactccacgtgcttccgtacat |
2038972 |
T |
|
| Q |
450 |
gcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgct-atgtgctatatattggtgatgtgataattatcttgg |
548 |
Q |
| |
|
| || ||| ||||| ||||||||||| ||||| | ||| || |||||||| | || | | ||||| | |||||| ||| | |||||||||| |||| |
|
|
| T |
2038973 |
gtatatgtatatataactgtgttgtgataattattttggtggtgccgttttgaaatgaaggattatgtgttttatatttgtgttatgataattattttgg |
2039072 |
T |
|
| Q |
549 |
tggtgttgttttggcatgaatattatgtgt |
578 |
Q |
| |
|
||||||||||||| ||||||||| |||||| |
|
|
| T |
2039073 |
tggtgttgttttgacatgaatatcatgtgt |
2039102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 492
Target Start/End: Complemental strand, 32870312 - 32870275
Alignment:
| Q |
455 |
tgtgaatatatttgtgttgtgatgattatcatagtgtt |
492 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
32870312 |
tgtgtatatatttatgttgtgatgattatcatagtgtt |
32870275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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