View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5863_high_1 (Length: 543)
Name: NF5863_high_1
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5863_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 13099408 - 13099666
Alignment:
| Q |
1 |
aatatatctatactattctctgaacagaatactcttttggatcgatgtgaattaattgcatgaataaattttgggtttttcgaaaattataagagtaaga |
100 |
Q |
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| T |
13099408 |
aatatatctatactattctctgaacagaatactcttttggatcgatgtgaattaattgcatgaataaattttgggtttttcgaaatttataagagtaaga |
13099507 |
T |
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| Q |
101 |
agtaaaatgacaaagcagaagaaaacaaaaactcatagcccaatcaacttcatgtgggttcactctgccatgactctgccaactatacaggaaaaaaggg |
200 |
Q |
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| T |
13099508 |
agtaaaatgacaaagcacaaaaaaacaaaacctcatagcccaatcaacttcatgtgggttcactctgccatgactctgctaactatacaggaaaaaaggg |
13099607 |
T |
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| Q |
201 |
aataatcgtctgctaacttttgtcactattatcgcataagatctttaagtcggtccatc |
259 |
Q |
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| T |
13099608 |
tataatcgtctgctaacttttgtcactattatcgcataagatttttaagtcggtccatc |
13099666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 13029228 - 13029485
Alignment:
| Q |
1 |
aatatatctatactattctctgaacagaatactcttttggatcgatgtgaattaattgcatgaataaattttgggtttttcgaaaattataagagtaaga |
100 |
Q |
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| T |
13029228 |
aatatatctatactattctctgaacagaatactcttttggatcgatgtgaattaattgcatgaataaattttgggtttttcgaaaattataagagtaaga |
13029327 |
T |
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| Q |
101 |
agtaaaatgacaaagcagaagaaaacaaaaactcatagcccaatcaacttcatgtgggttcactctgccatgactctgccaactatacaggaaaaaaggg |
200 |
Q |
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| T |
13029328 |
agtaaaatgacaaagcacaagaaaacaaaacctcatagcccaatcaacttcatgtgggttcattctgccatg-ctctgctaactatacaggaaaaaaggg |
13029426 |
T |
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| Q |
201 |
aataatcgtctgctaacttttgtcactattatcgcataagatctttaagtcggtccatc |
259 |
Q |
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| T |
13029427 |
tataatcgtctgctaacttttgtcactattatcgcataagatttttaagtcggtccatc |
13029485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 364 - 529
Target Start/End: Original strand, 13099769 - 13099934
Alignment:
| Q |
364 |
aattctaaaatcttgcattctcaaagccatgtaaatcactaactctattcatagactttctcatgatagcaactttagccaatctctcagcagctctcca |
463 |
Q |
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| T |
13099769 |
aattctaaaatcttgcattctcaaagccatgtaaatcactaactctattcatagactttctcatgatagcaactttagccaatctctcagcagctctcca |
13099868 |
T |
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| Q |
464 |
agccgatgtcggcgtaagcggctctaatttctcctcggagcgactattcctccgcctttgattttg |
529 |
Q |
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| T |
13099869 |
agccgatgtcggcgtaagcggctctaatttctcctcggagcgactattcctccgcctttgattttg |
13099934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 364 - 529
Target Start/End: Original strand, 13029586 - 13029751
Alignment:
| Q |
364 |
aattctaaaatcttgcattctcaaagccatgtaaatcactaactctattcatagactttctcatgatagcaactttagccaatctctcagcagctctcca |
463 |
Q |
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| T |
13029586 |
aattctaaaatcttgcattctcaaagccatgtaaatcactaactctattcatagactttctcatgatagcaactttagccaatctctcagcagctctcca |
13029685 |
T |
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| Q |
464 |
agccgatgtcggcgtaagcggctctaatttctcctcggagcgactattcctccgcctttgattttg |
529 |
Q |
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| T |
13029686 |
agccgatgtcggcgtaagtggctctaatttatcctcagagcgactattcctccgccttcgattttg |
13029751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 384 - 487
Target Start/End: Original strand, 28181367 - 28181470
Alignment:
| Q |
384 |
tcaaagccatgtaaatcactaactctattcatagactttctcatgatagcaactttagccaatctctcagcagctctccaagccgatgtcggcgtaagcg |
483 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||| | ||||||| ||| ||||||||||| |||||||||||| |
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| T |
28181367 |
tcaaagccatgtaaatcactgactttattcatagactttctcatgatagccactttagccagtttctcagctgctttccaagccgatatcggcgtaagcg |
28181466 |
T |
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| Q |
484 |
gctc |
487 |
Q |
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|||| |
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| T |
28181467 |
gctc |
28181470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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