View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5863_high_4 (Length: 319)
Name: NF5863_high_4
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5863_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 104 - 255
Target Start/End: Complemental strand, 4057329 - 4057176
Alignment:
| Q |
104 |
agaagcaatagagggcagataaatttgctaagaaagcaacaaaatgactcagagaaacaattcaaaactttgaactttttt-aatcactaagagagatta |
202 |
Q |
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| T |
4057329 |
agaagtaaaagagggaagataaatttgctaagcaagcaataaaatgacttagagaaacaattcaaaactttgaacttttttaaatcactaagagagatta |
4057230 |
T |
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| Q |
203 |
tcaattt-attagcgaatcatggcggtttttggtgacctaaggatatacacatt |
255 |
Q |
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| T |
4057229 |
tcaatttgtttagcgaatcatggcggtttttggtgacctaaggatatacacatt |
4057176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 4058423 - 4058354
Alignment:
| Q |
19 |
aataagttgtgtgagtttattagaacttgaatgtgtatctcttatatgagagcatagtgttgcgtcttca |
88 |
Q |
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| T |
4058423 |
aataagttgtgtgagtttattagaacttgtatgtgtatctcttatacgagagcatagtgttgcctcttca |
4058354 |
T |
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