View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5863_high_5 (Length: 270)

Name: NF5863_high_5
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5863_high_5
NF5863_high_5
[»] chr6 (12 HSPs)
chr6 (129-253)||(9075174-9075298)
chr6 (17-124)||(9075237-9075344)
chr6 (131-214)||(9074073-9074156)
chr6 (182-227)||(9194420-9194465)
chr6 (71-126)||(9074079-9074134)
chr6 (149-214)||(30003249-30003314)
chr6 (135-227)||(33532432-33532524)
chr6 (131-221)||(1912443-1912533)
chr6 (50-92)||(5730118-5730160)
chr6 (169-234)||(19390965-19391030)
chr6 (166-211)||(24812534-24812579)
chr6 (167-215)||(3784911-3784959)
[»] chr7 (10 HSPs)
chr7 (135-213)||(48517386-48517464)
chr7 (129-221)||(2219461-2219552)
chr7 (137-234)||(18749198-18749297)
chr7 (133-213)||(23117298-23117378)
chr7 (136-221)||(24673366-24673451)
chr7 (69-122)||(31809136-31809189)
chr7 (50-98)||(2219448-2219496)
chr7 (70-126)||(24673366-24673422)
chr7 (49-93)||(27720473-27720517)
chr7 (131-227)||(32612398-32612494)
[»] chr1 (7 HSPs)
chr1 (167-234)||(6025943-6026010)
chr1 (49-123)||(12764631-12764706)
chr1 (142-228)||(8856780-8856866)
chr1 (69-123)||(46937627-46937681)
chr1 (170-215)||(17204675-17204720)
chr1 (70-121)||(3234585-3234636)
chr1 (134-248)||(24808356-24808470)
[»] chr8 (7 HSPs)
chr8 (49-113)||(11813980-11814044)
chr8 (166-248)||(45371070-45371152)
chr8 (167-216)||(16690945-16690994)
chr8 (133-235)||(42822605-42822707)
chr8 (71-119)||(4050512-4050560)
chr8 (167-227)||(21226953-21227013)
chr8 (136-216)||(41686218-41686298)
[»] chr5 (11 HSPs)
chr5 (128-211)||(5987329-5987412)
chr5 (171-221)||(22532590-22532640)
chr5 (144-221)||(4787946-4788023)
chr5 (173-234)||(5516022-5516083)
chr5 (133-229)||(6586544-6586640)
chr5 (70-114)||(42440170-42440214)
chr5 (136-190)||(9634890-9634944)
chr5 (47-113)||(13898736-13898802)
chr5 (131-205)||(42440145-42440219)
chr5 (50-95)||(29466272-29466317)
chr5 (81-126)||(34556526-34556571)
[»] chr4 (7 HSPs)
chr4 (168-227)||(34581607-34581666)
chr4 (172-233)||(4762529-4762590)
chr4 (144-216)||(4683769-4683841)
chr4 (171-209)||(3304270-3304308)
chr4 (172-226)||(13256204-13256258)
chr4 (175-216)||(682009-682050)
chr4 (135-216)||(42647417-42647498)
[»] chr3 (8 HSPs)
chr3 (134-221)||(24830171-24830258)
chr3 (171-248)||(50402630-50402707)
chr3 (145-248)||(7877781-7877884)
chr3 (179-221)||(8788959-8789001)
chr3 (171-216)||(43307604-43307649)
chr3 (166-211)||(43307667-43307712)
chr3 (143-216)||(54838621-54838694)
chr3 (174-206)||(402793-402825)
[»] chr2 (4 HSPs)
chr2 (70-117)||(17505001-17505048)
chr2 (166-227)||(36300410-36300474)
chr2 (190-227)||(24097778-24097815)
chr2 (49-94)||(29378606-29378651)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 129 - 253
Target Start/End: Complemental strand, 9075298 - 9075174
Alignment:
Q  129 ggtcgcggaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtatt 228  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9075298 ggtcgcggaaaacagtggtttgttcacattccgttatacaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtatt 9075199  T
Q  229 gcggaaaattagtgatttgtgaaag 253  Q
    |||||||||||||||||||||||||    
T  9075198 gcggaaaattagtgatttgtgaaag 9075174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 9075344 - 9075237
Alignment:
Q  17 atgaaaaatactctaagatagtgattgataaatgttgtcaatcgcgggtcgtggaaaacagtggtttgttcaaattccgttatacaacagtgttatagtg 116  Q
    ||||||||||||||||||||||||||| || |||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||| |    
T  9075344 atgaaaaatactctaagatagtgattgttacatgttgtcaatcacgggtcgcggaaaacagtggtttgttcacattccgttatacaacagtgctatagcg 9075245  T
Q  117 ccactata 124  Q
    || |||||    
T  9075244 ccgctata 9075237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 9074073 - 9074156
Alignment:
Q  131 tcgcggaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgta 214  Q
    ||||| ||||||| | |||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  9074073 tcgcgaaaaacagtgttttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgta 9074156  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 9194420 - 9194465
Alignment:
Q  182 gccgctataacctctatttgacaacattttgtacttaataccgtat 227  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||    
T  9194420 gccgctataaccactatttgacaacattttgtactaaataccgtat 9194465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 9074079 - 9074134
Alignment:
Q  71 aaaacagtggtttgttcaaattccgttatacaacagtgttatagtgccactatagc 126  Q
    ||||||||| |||||||||||||| ||||||||||||| ||||| ||| |||||||    
T  9074079 aaaacagtgttttgttcaaattccattatacaacagtgctatagcgccgctatagc 9074134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 30003249 - 30003314
Alignment:
Q  149 tgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgta 214  Q
    |||||| |||| | || |||||| |||||||| |||||| || |||||||||||||||||||||||    
T  30003249 tgttcaaattctgctatacaacaatgctatagagccgctttagcctctatttgacaacattttgta 30003314  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 33532432 - 33532524
Alignment:
Q  135 ggaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtat 227  Q
    |||||| ||||||||||||| |||| | ||  |||||||||||||||||  ||||| |  || |||||||||||| |||||| |||| |||||    
T  33532432 ggaaaatagcggtttgttcaaattctgctactcaacagtgctatagcgcaactatagctgctgtttgacaacattctgtactaaatagcgtat 33532524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 1912443 - 1912533
Alignment:
Q  131 tcgcggaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaata 221  Q
    |||||||||| || |||||||||| |||||| ||  |||| ||||||||||| | |||||  | ||||||||||| | |||||||| ||||    
T  1912443 tcgcggaaaatagaggtttgttcaaattccgctatgcaacggtgctatagcgtcactatagtcgctatttgacaataatttgtactaaata 1912533  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 5730118 - 5730160
Alignment:
Q  50 gttgtcaatcgcgggtcgtggaaaacagtggtttgttcaaatt 92  Q
    ||||||||||| || |||||||||| |||||||||||||||||    
T  5730118 gttgtcaatcgtggttcgtggaaaatagtggtttgttcaaatt 5730160  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 19391030 - 19390965
Alignment:
Q  169 acagtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtattgcggaa 234  Q
    |||||||||||||||| |||||||  ||||||||||| | |||||||| |||| | ||||| ||||    
T  19391030 acagtgctatagcgccactataactgctatttgacaatactttgtactaaatagcttattgtggaa 19390965  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 24812534 - 24812579
Alignment:
Q  166 acaacagtgctatagcgccgctataacctctatttgacaacatttt 211  Q
    ||||||| |||||||||||||||||| ||||||||| ||| |||||    
T  24812534 acaacagcgctatagcgccgctataatctctatttggcaatatttt 24812579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 3784911 - 3784959
Alignment:
Q  167 caacagtgctatagcgccgctataacctctatttgacaacattttgtac 215  Q
    ||||||||||| |||||||||||| ||||| ||||||||  ||||||||    
T  3784911 caacagtgctagagcgccgctatagcctctgtttgacaatgttttgtac 3784959  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 48517386 - 48517464
Alignment:
Q  135 ggaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgt 213  Q
    |||||| ||||||||||||| ||| || || |||||| ||||||||||||||||||||| |||||||| ||||||||||    
T  48517386 ggaaaatagcggtttgttcaaatttcgctatacaacattgctatagcgccgctataaccactatttgaaaacattttgt 48517464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 2219461 - 2219552
Alignment:
Q  129 ggtcgcggaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaata 221  Q
    ||||| |||||| || | |||||||| |||| ||||  ||||| ||||||||| ||| ||||||| ||||||||||| |||||||||| ||||    
T  2219461 ggtcgtggaaaatagtgatttgttcaaattctgttac-caacaatgctatagcaccgttataaccgctatttgacaatattttgtactaaata 2219552  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 18749198 - 18749297
Alignment:
Q  137 aaaacagcggtttgttcacattccgttagacaacagtgctatagc--gccgctataacctctatttgacaacattttgtacttaataccgtattgcggaa 234  Q
    |||| ||| ||||||||| |||  |||| ||||||||||||||||  || |||||| || || |||||||||||| |||||| |||| ||||| ||||||    
T  18749198 aaaatagcagtttgttcaaattatgttacacaacagtgctatagcgtgctgctatagccgctgtttgacaacattctgtactaaatatcgtatagcggaa 18749297  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 23117298 - 23117378
Alignment:
Q  133 gcggaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgt 213  Q
    |||||||| || |||||||||| |||||| ||    ||||||||||||||| |||||| || |||||| ||||||||||||    
T  23117298 gcggaaaatagtggtttgttcaaattccgctacgtgacagtgctatagcgctgctatacccactatttcacaacattttgt 23117378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 24673366 - 24673451
Alignment:
Q  136 gaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaata 221  Q
    ||||| || |||||||||| |||| | ||  |||||||| ||| | ||||||||| |  |||||||||||||||||||||| ||||    
T  24673366 gaaaatagtggtttgttcaaattcagctatgcaacagtgatatggtgccgctatagcggctatttgacaacattttgtactgaata 24673451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 31809189 - 31809136
Alignment:
Q  69 ggaaaacagtggtttgttcaaattccgttatacaacagtgttatagtgccacta 122  Q
    ||||||||| |||||| |||||||||| ||  |||||||| |||||||||||||    
T  31809189 ggaaaacagcggtttgatcaaattccgctacgcaacagtgctatagtgccacta 31809136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 2219448 - 2219496
Alignment:
Q  50 gttgtcaatcgcgggtcgtggaaaacagtggtttgttcaaattccgtta 98  Q
    ||||||||| || |||||||||||| |||| ||||||||||||| ||||    
T  2219448 gttgtcaattgcaggtcgtggaaaatagtgatttgttcaaattctgtta 2219496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 24673366 - 24673422
Alignment:
Q  70 gaaaacagtggtttgttcaaattccgttatacaacagtgttatagtgccactatagc 126  Q
    ||||| |||||||||||||||||| | ||| |||||||| ||| ||||| |||||||    
T  24673366 gaaaatagtggtttgttcaaattcagctatgcaacagtgatatggtgccgctatagc 24673422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 27720517 - 27720473
Alignment:
Q  49 tgttgtcaatcgcgggtcgtggaaaacagtggtttgttcaaattc 93  Q
    |||||||||| |||| || ||||||| ||||||||||||||||||    
T  27720517 tgttgtcaattgcggatcatggaaaatagtggtttgttcaaattc 27720473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 227
Target Start/End: Original strand, 32612398 - 32612494
Alignment:
Q  131 tcgcggaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtat 227  Q
    |||| ||||| ||||||||  ||| |||||| || ||||||||||||||||||| | ||| ||  || || |||| |||||||||| |||| |||||    
T  32612398 tcgcagaaaatagcggtttagtcaaattccgctacacaacagtgctatagcgccaccatagccggtacttcacaatattttgtactaaatagcgtat 32612494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 6025943 - 6026010
Alignment:
Q  167 caacagtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtattgcggaa 234  Q
    ||||||||||||||||| |||||| || |||||||||||||||||||||| |||| | ||| ||||||    
T  6025943 caacagtgctatagcgctgctatagccactatttgacaacattttgtactaaatagcatatcgcggaa 6026010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 12764631 - 12764706
Alignment:
Q  49 tgttgtcaatcgcgggtcgtggaaaacagtggtttgttcaaattcc-gttatacaacagtgttatagtgccactat 123  Q
    ||||||||||||||| || || | || ||||||||||||||||||| | ||| || ||||||||||||||||||||    
T  12764631 tgttgtcaatcgcggatcatgtataatagtggtttgttcaaattccagctatgcaccagtgttatagtgccactat 12764706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 8856866 - 8856780
Alignment:
Q  142 agcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtatt 228  Q
    ||||||||||||| |||||  || |  |||||||||||| ||||||||| | |||||||||||||| | |||||| |||| ||||||    
T  8856866 agcggtttgttcaaattccactacaatacagtgctatagtgccgctatagcttctatttgacaacactctgtactgaatagcgtatt 8856780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 46937681 - 46937627
Alignment:
Q  69 ggaaaacagtggtttgttcaaattccgttatacaacagtgttatagtgccactat 123  Q
    |||||| || ||||||||||||||||| ||| |||||||||||||| ||||||||    
T  46937681 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 46937627  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 17204675 - 17204720
Alignment:
Q  170 cagtgctatagcgccgctataacctctatttgacaacattttgtac 215  Q
    |||||| || |||||||||||||| |||||||||||||||||||||    
T  17204675 cagtgccattgcgccgctataaccactatttgacaacattttgtac 17204720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 3234636 - 3234585
Alignment:
Q  70 gaaaacagtggtttgttcaaattccgttatacaacagtgttatagtgccact 121  Q
    |||||||||| ||||||||||||||| || || ||| |||||||||||||||    
T  3234636 gaaaacagtgctttgttcaaattccgctacactacaatgttatagtgccact 3234585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 24808470 - 24808356
Alignment:
Q  134 cggaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtattgcgga 233  Q
    |||||||||| |||||||||| |||| | ||  | |||||||| |||| | ||||| |||  |||||||||||| |||| ||| |||||| ||| |||||    
T  24808470 cggaaaacagtggtttgttcaaattctgctatgctacagtgctttagcactgctatgaccattatttgacaacactttgaactaaataccatatcgcgga 24808371  T
Q  234 aaattagtgatttgt 248  Q
    | | |||| ||||||    
T  24808370 ataatagtaatttgt 24808356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 11814044 - 11813980
Alignment:
Q  49 tgttgtcaatcgcgggtcgtggaaaacagtggtttgttcaaattccgttatacaacagtgttata 113  Q
    ||||||||||||||  | |||||||| ||||||||||||||||||||||| |  |||||||||||    
T  11814044 tgttgtcaatcgcgattagtggaaaatagtggtttgttcaaattccgttacattacagtgttata 11813980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 45371070 - 45371152
Alignment:
Q  166 acaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtattgcggaaaattagtgatttgt 248  Q
    ||||||||||||||| |||| ||||    |||||||||||||||||||||| |||| | |||||||||| | ||||| |||||    
T  45371070 acaacagtgctatagtgccgttatagtagctatttgacaacattttgtactaaatagcatattgcggaacaatagtggtttgt 45371152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 16690945 - 16690994
Alignment:
Q  167 caacagtgctatagcgccgctataacctctatttgacaacattttgtact 216  Q
    |||||||||||||| |||| |||| ||||||||||| |||||||||||||    
T  16690945 caacagtgctatagtgccgttataccctctatttgaaaacattttgtact 16690994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 42822707 - 42822605
Alignment:
Q  133 gcggaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtattgcgg 232  Q
    |||||||| | | ||||||||| |||||  ||  |||||||||||||||||||||||| || |||||| |||  ||||||| || ||||  | |||||||    
T  42822707 gcggaaaatatcagtttgttcaaattccactatgcaacagtgctatagcgccgctatagccactatttcacagtattttgtcctaaatagtggattgcgg 42822608  T
Q  233 aaa 235  Q
    |||    
T  42822607 aaa 42822605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 4050560 - 4050512
Alignment:
Q  71 aaaacagtggtttgttcaaattccgttatacaacagtgttatagtgcca 119  Q
    |||| |||||||||||||||||| |||| ||||||||| ||||| ||||    
T  4050560 aaaatagtggtttgttcaaattctgttacacaacagtgatatagcgcca 4050512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 21227013 - 21226953
Alignment:
Q  167 caacagtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtat 227  Q
    |||||||| ||||||||  ||||| |  |||||||||||||||||||||| |||| |||||    
T  21227013 caacagtgatatagcgctactatagcagctatttgacaacattttgtactgaatagcgtat 21226953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 41686218 - 41686298
Alignment:
Q  136 gaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtact 216  Q
    ||||| ||||||||||||| ||| || ||  ||||||||||||| |||||||||| |  ||| || |||| ||||||||||    
T  41686218 gaaaagagcggtttgttcaaatttcgctatgcaacagtgctataacgccgctatagcagctacttcacaatattttgtact 41686298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 5987412 - 5987329
Alignment:
Q  128 cggtcgcggaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacatttt 211  Q
    ||||||| ||||| ||| ||||| ||| ||||| |||  ||| |||||||||||||||||||| || ||| |||||||||||||    
T  5987412 cggtcgcagaaaatagcagtttgatcaaattccattatgcaatagtgctatagcgccgctatagccactacttgacaacatttt 5987329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 22532640 - 22532590
Alignment:
Q  171 agtgctatagcgccgctataacctctatttgacaacattttgtacttaata 221  Q
    |||||||||| ||| |||||||||||||| ||||| |||||||||||||||    
T  22532640 agtgctatagtgccactataacctctattcgacaatattttgtacttaata 22532590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 4788023 - 4787946
Alignment:
Q  144 cggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaata 221  Q
    ||||||||||| |||||| || | ||||||||||||| |||  | || || |||||||||||||||||||||| ||||    
T  4788023 cggtttgttcaaattccgatataaaacagtgctatagtgcctgtgtagccactatttgacaacattttgtactaaata 4787946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 5516083 - 5516022
Alignment:
Q  173 tgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtattgcggaa 234  Q
    |||||||| || |||||| ||||||||||||| |||| |||||||||||  |||||||||||    
T  5516083 tgctatagtgctgctatagcctctatttgacaccattgtgtacttaatagtgtattgcggaa 5516022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 6586640 - 6586544
Alignment:
Q  133 gcggaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtattg 229  Q
    |||||||| ||||||||||||| |||||  ||  ||| ||| |||||||| | |||||||| || |||||||| |||||| ||| |||||| |||||    
T  6586640 gcggaaaatagcggtttgttcaaattcctctatgcaatagttctatagcggcactataaccgctgtttgacaatattttgcactaaataccatattg 6586544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 42440214 - 42440170
Alignment:
Q  70 gaaaacagtggtttgttcaaattccgttatacaacagtgttatag 114  Q
    |||||||||||||||||||||||||| ||| | ||||||||||||    
T  42440214 gaaaacagtggtttgttcaaattccgctatgctacagtgttatag 42440170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 9634890 - 9634944
Alignment:
Q  136 gaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctata 190  Q
    ||||| ||||||||||||| |||||| ||  ||||| ||||||||||||||||||    
T  9634890 gaaaatagcggtttgttcaaattccgctacgcaacattgctatagcgccgctata 9634944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 13898802 - 13898736
Alignment:
Q  47 aatgttgtcaatcgcgggtcgtggaaaacagtggtttgttcaaattccgttatacaacagtgttata 113  Q
    ||||||||||||| ||| | |||||||| ||||| ||||| |||||||| || ||||||||| ||||    
T  13898802 aatgttgtcaatcacggatagtggaaaatagtgggttgttaaaattccgctacacaacagtgctata 13898736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 42440219 - 42440145
Alignment:
Q  131 tcgcggaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaa 205  Q
    |||| |||||||| |||||||||| |||||| ||  | |||||| |||||| | |||||| ||||||||||||||    
T  42440219 tcgcagaaaacagtggtttgttcaaattccgctatgctacagtgttatagcactgctatagcctctatttgacaa 42440145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 29466317 - 29466272
Alignment:
Q  50 gttgtcaatcgcgggtcgtggaaaacagtggtttgttcaaattccg 95  Q
    |||||||||||||| || ||||||| | ||||||||||||||||||    
T  29466317 gttgtcaatcgcggatcctggaaaataatggtttgttcaaattccg 29466272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 34556571 - 34556526
Alignment:
Q  81 tttgttcaaattccgttatacaacagtgttatagtgccactatagc 126  Q
    |||||||||||||| |||| ||| |||| |||||||||||||||||    
T  34556571 tttgttcaaattccattatgcaatagtgctatagtgccactatagc 34556526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 34581666 - 34581607
Alignment:
Q  168 aacagtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtat 227  Q
    ||||||||||||||||  ||||| || |||||||||||||||||||||| |||| |||||    
T  34581666 aacagtgctatagcgctactatagccgctatttgacaacattttgtactaaatagcgtat 34581607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 4762529 - 4762590
Alignment:
Q  172 gtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtattgcgga 233  Q
    ||||||| | ||| |||||||  |||||||||||||||||||||| |||| |||||||||||    
T  4762529 gtgctatggtgccactataacggctatttgacaacattttgtactaaatagcgtattgcgga 4762590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 4683769 - 4683841
Alignment:
Q  144 cggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtact 216  Q
    ||||||||| | |||| |||| ||||| | |||||||||||| |||| || ||||||||||| ||||||||||    
T  4683769 cggtttgttaaaattctgttacacaactgcgctatagcgccgatatagcccctatttgacaatattttgtact 4683841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 3304270 - 3304308
Alignment:
Q  171 agtgctatagcgccgctataacctctatttgacaacatt 209  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  3304270 agtgctatagcgccgctataactgctatttgacaacatt 3304308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 13256258 - 13256204
Alignment:
Q  172 gtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgta 226  Q
    |||||||| ||||||||||| | ||||||| |||||||||||||| |||| ||||    
T  13256258 gtgctataacgccgctataatcactatttggcaacattttgtactgaatagcgta 13256204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 682050 - 682009
Alignment:
Q  175 ctatagcgccgctataacctctatttgacaacattttgtact 216  Q
    ||||||| | |||||||||||||||||||||||| |||||||    
T  682050 ctatagcactgctataacctctatttgacaacatgttgtact 682009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 42647498 - 42647417
Alignment:
Q  135 ggaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtact 216  Q
    |||||| ||||||||||||| |||||| ||  |||||  ||| ||| |||||||||||  || |||||||| ||||||||||    
T  42647498 ggaaaatagcggtttgttcaaattccgctacgcaacaaagctctagtgccgctataactactgtttgacaatattttgtact 42647417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 24830258 - 24830171
Alignment:
Q  134 cggaaaacagcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaata 221  Q
    ||||||||| | ||||||||| |||  | || |||| ||||||||||||||| |||| ||| |||||||||||||||| |||| ||||    
T  24830258 cggaaaacaacagtttgttcaaattttgctacacaagagtgctatagcgccgatatagcctttatttgacaacattttatactaaata 24830171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 50402630 - 50402707
Alignment:
Q  171 agtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtattgcggaaaattagtgatttgt 248  Q
    ||||||||||||| |||||| |  ||||||||||||| ||| |||| |||| | |||||||||| | |||||||||||    
T  50402630 agtgctatagcgcagctatagctgctatttgacaacactttatactaaatagcatattgcggaacaatagtgatttgt 50402707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 248
Target Start/End: Complemental strand, 7877884 - 7877781
Alignment:
Q  145 ggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaataccgtattgcggaaaattagtgat 244  Q
    |||||||||| |||||  || || |||||||||||||| | | ||| ||||||||||| ||||   |||||| |||| ||||||| |||| | |||||||    
T  7877884 ggtttgttcaaattccactacactacagtgctatagcgtcccaatagcctctatttgataacaaactgtactaaatagcgtattgtggaacaatagtgat 7877785  T
Q  245 ttgt 248  Q
    ||||    
T  7877784 ttgt 7877781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 8788959 - 8789001
Alignment:
Q  179 agcgccgctataacctctatttgacaacattttgtacttaata 221  Q
    |||||| ||||| ||||||||||||||||||||||| ||||||    
T  8788959 agcgccactatagcctctatttgacaacattttgtatttaata 8789001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 43307604 - 43307649
Alignment:
Q  171 agtgctatagcgccgctataacctctatttgacaacattttgtact 216  Q
    |||||||||||||| |||||||| |||| | |||||||||||||||    
T  43307604 agtgctatagcgccactataaccactatctaacaacattttgtact 43307649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 43307667 - 43307712
Alignment:
Q  166 acaacagtgctatagcgccgctataacctctatttgacaacatttt 211  Q
    |||| |||||||||||||| |||||||| |||| ||||||||||||    
T  43307667 acaatagtgctatagcgccactataaccgctatctgacaacatttt 43307712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 54838694 - 54838621
Alignment:
Q  143 gcggtttgttcacattccgttagacaacagtgctatagcgccgctataacctctatttgacaacattttgtact 216  Q
    |||||||||||| |||||| |   |||||||||||||||| |  | || || ||||||||||||||||||||||    
T  54838694 gcggtttgttcaaattccgctgtgcaacagtgctatagcggcattttagccactatttgacaacattttgtact 54838621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 402825 - 402793
Alignment:
Q  174 gctatagcgccgctataacctctatttgacaac 206  Q
    ||||||||||||||||||| |||||||||||||    
T  402825 gctatagcgccgctataacttctatttgacaac 402793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 17505048 - 17505001
Alignment:
Q  70 gaaaacagtggtttgttcaaattccgttatacaacagtgttatagtgc 117  Q
    ||||| ||| |||||||||||||||| || ||||||||||||||||||    
T  17505048 gaaaatagttgtttgttcaaattccgctacacaacagtgttatagtgc 17505001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 36300474 - 36300410
Alignment:
Q  166 acaacagtgctatagcgccgc---tataacctctatttgacaacattttgtacttaataccgtat 227  Q
    |||| ||||||||||||||||   |||| || |||||||||||||||||||||| |||| |||||    
T  36300474 acaatagtgctatagcgccgccactatatccactatttgacaacattttgtactaaatagcgtat 36300410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 24097815 - 24097778
Alignment:
Q  190 aacctctatttgacaacattttgtacttaataccgtat 227  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  24097815 aaccgctatttgacaacattttgtactaaataccgtat 24097778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 29378651 - 29378606
Alignment:
Q  49 tgttgtcaatcgcgggtcgtggaaaacagtggtttgttcaaattcc 94  Q
    ||||||||||||||| |||||| ||| || ||||||||||||||||    
T  29378651 tgttgtcaatcgcggatcgtgggaaatagcggtttgttcaaattcc 29378606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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