View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5863_low_2 (Length: 535)
Name: NF5863_low_2
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5863_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Original strand, 53457995 - 53458498
Alignment:
| Q |
19 |
aatttagcatgaggttcagaaccaggagtaagaacatgatcgagaaaagaagatataacagaagctgttaatttcttcctcaatgcaattgtaagacgaa |
118 |
Q |
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| T |
53457995 |
aatttagcatgaggttcagaaccaggagtaagaacatgatcgagaaaagaagatataacagaagctgttaatttcttcctcaatgcaattgtaagacgaa |
53458094 |
T |
|
| Q |
119 |
cagcacgagcaattctacgaacttccttcgagtacgaaccggtctcgataacggatgctatctccttcaaatctatgaatcacaattccaaaattcacaa |
218 |
Q |
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| T |
53458095 |
cagcacgagcaattctacgaacttccttcgagtacgaaccggtctcgataacggacgctatctccttcaaatctatgaatcacaattccaaaattcacaa |
53458194 |
T |
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| Q |
219 |
attnnnnnnnnnnnnnnnnnnnttgagatgtgaaatcgatagacggagattcttacgctgcaaagtagatggaactggtggagaaacggaattcgaagga |
318 |
Q |
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| T |
53458195 |
attaaaaacggaaaaaagaaaattgagatgtgaaatcgatagacggagattcttacgctgcaaagtagatggaactggtggagaaacggaattcgaagga |
53458294 |
T |
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| Q |
319 |
gttgaacgatctttcatctcaagatcttgagtcattgtgaacgaaattgagcgaaattgggcgaaaattgggagattttgattnnnnnnnccctaacaag |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53458295 |
gttgaacgatctttcatctcaagatcttgagtcattgtgaacgaaattgagcgaaattgggcgaaaattgggagattttgattaaaaaaaccctaacaag |
53458394 |
T |
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| Q |
419 |
tgaagaagaccaaacaagaagcaacgtggtcacaaactcactgagagctttttccgaagctaaaacgcatcgttgcacactttttaatttcttttcttta |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53458395 |
tgaagaagaccaaacaagaagcaacgtggtcacaaactcactgagagctttttccgaagctaaaacgcatcgttgcacgctttttaatttcttttcttta |
53458494 |
T |
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| Q |
519 |
taat |
522 |
Q |
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| T |
53458495 |
taat |
53458498 |
T |
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