View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5864-Insertion-1 (Length: 905)

Name: NF5864-Insertion-1
Description: NF5864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5864-Insertion-1
NF5864-Insertion-1
[»] chr3 (16 HSPs)
chr3 (294-802)||(24653954-24654449)
chr3 (51-248)||(24675431-24675625)
chr3 (45-247)||(24640333-24640532)
chr3 (45-235)||(24691546-24691733)
chr3 (55-175)||(24718960-24719080)
chr3 (294-408)||(24682714-24682827)
chr3 (647-738)||(24682624-24682715)
chr3 (45-243)||(24652319-24652513)
chr3 (149-265)||(24686186-24686299)
chr3 (47-246)||(24632584-24632778)
chr3 (45-199)||(24713764-24713915)
chr3 (45-114)||(24686296-24686365)
chr3 (797-876)||(24653865-24653945)
chr3 (355-437)||(24713626-24713705)
chr3 (134-197)||(24717081-24717142)
chr3 (365-450)||(24686023-24686108)
[»] chr4 (1 HSPs)
chr4 (192-234)||(4037575-4037617)
[»] chr2 (1 HSPs)
chr2 (9-46)||(25384702-25384739)
[»] chr1 (1 HSPs)
chr1 (9-46)||(4001467-4001504)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 294 - 802
Target Start/End: Complemental strand, 24654449 - 24653954
Alignment:
Q  294 tactctcaaattagaaatttgcaaggatttttctttgttggttgttcccttattgatattatttatgattagtttctagattttccttttgcatatgata 393  Q
    |||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  24654449 tactctcaaattagaa-ttagcaaggatttttcgttgttggttgttcccttattgatattgtttatgattagtttccagattttccttttgcatatgata 24654351  T
Q  394 atgttgatttttatgtttgttttcatttacttgagtgttattgagatactaaacacattattgatgtctaatgggattcttgtaagttacgatttacatt 493  Q
    ||||||             ||||||||| ||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  24654350 atgttg-------------ttttcatttgctttagtgtttttgagatactatacacattattgatgtctaatgggattcttgtaagttacaatttacatt 24654264  T
Q  494 ttactgaataaatat---gcttgctttattt--ggaacgatcaannnnnnnnagatgattagtagttcaattcggaaatttcaactgtgcagataaagtt 588  Q
    ||||||||||||||    |||||||||||||  ||||| |||||        ||||||||| || ||||||| ||||||||||||| |||||||||| ||    
T  24654263 ttactgaataaataataagcttgctttatttttggaaccatcaaatgttcttagatgattaataattcaatttggaaatttcaactttgcagataaaatt 24654164  T
Q  589 gagtga-aagacaagacaactatatatgctgcttaaagatccagaagtagactgctcagtgacattattcctatcagctatgccttccctgctgctctaa 687  Q
    |||||  |||    |||||||||    ||||||||||| || ||| | || |||||||||||||||||| || ||||||||| |||||||||||||||||    
T  24654163 gagtggcaagggctgacaactat----gctgcttaaagttcaagaggcagtctgctcagtgacattatttctttcagctatgtcttccctgctgctctaa 24654068  T
Q  688 ggtagattttcatactaaatataaatgttattagtgaatattgatcacagttttcttaataaaaaatcagcttcttcattttaaccgatg-ttttagtga 786  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||| ||| || |||||  ||||||||||| ||||||||||  |||| |||||| ||    
T  24654067 ggtagattttcttactaaatctaaatgttattagtgaatattgatcatagtgtttttaat--aaaatcagcttgttcattttaaatgatgtttttagcga 24653970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 51 - 248
Target Start/End: Complemental strand, 24675625 - 24675431
Alignment:
Q  51 tctcacaatttagggatttaatacttgatttgtcacagtacttgaggagcatgaagaatttacaattcattgcgactgtttacaaaaatggtagttaata 150  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||||||| ||||||| |||||||||||||  |||||||  |||||||||||||||||    
T  24675625 tctcacaatttagggatttaataattgatttgtcattgtacttgaggagcgtgaagaacttacaattcattgaaactgtttcgaaaaatggtagttaata 24675526  T
Q  151 catgtattatttgcagagttcagcagacctcctcaagcaatattatgcatcctgtttttctcatagcgttgggatgattctttttggtggtctccttg 248  Q
    | ||||||||||||||||||||||| |   ||| |||| | |||||||| |||||||||||||||  | ||||||||||||||||   ||||||||||    
T  24675525 cgtgtattatttgcagagttcagcaaa---cctgaagccacattatgcagcctgtttttctcatatagctgggatgattctttttaaaggtctccttg 24675431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 45 - 247
Target Start/End: Complemental strand, 24640532 - 24640333
Alignment:
Q  45 ttcttttctcacaatttagggatttaatacttgatttgtcacagtacttgaggagcatgaagaatttacaattcattgcgactgtttacaaaaatggtag 144  Q
    ||||||| |||||||||||||||||||||  || |||||||| |||||| |||||| |||||||||||||||| ||| | |||||||  |||||||||||    
T  24640532 ttcttttatcacaatttagggatttaataagtggtttgtcactgtacttaaggagcgtgaagaatttacaattaattccaactgtttcgaaaaatggtag 24640433  T
Q  145 ttaatacatgtattatttgcagagttcagcagacctcctcaagcaatattatgcatcctgtttttctcatagcgttgggatgattctttttggtggtctc 244  Q
    ||||||||||||||||||||||||||||||| |   ||| |||| | |||||||| |||||||||| | || ||| ||||||||||||||| | ||||||    
T  24640432 ttaatacatgtattatttgcagagttcagcaaa---cctgaagcgacattatgcaacctgtttttcacctatcgtagggatgattctttttagaggtctc 24640336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 45 - 235
Target Start/End: Complemental strand, 24691733 - 24691546
Alignment:
Q  45 ttcttttctcacaatttagggatttaatacttgatttgtcacagtacttgaggagcatgaagaatttacaattcattgcgactgtttacaaaaatggtag 144  Q
    |||||||||||||||||| |||||||||| ||| | |||||  |||||| |||||||||||||| |||||||||||||| |||||||  ||| |||||||    
T  24691733 ttcttttctcacaatttatggatttaataattggtctgtcattgtacttaaggagcatgaagaacttacaattcattgcaactgtttcgaaatatggtag 24691634  T
Q  145 ttaatacatgtattatttgcagagttcagcagacctcctcaagcaatattatgcatcctgtttttctcatagcgttgggatgattcttttt 235  Q
    ||||||| ||||||||||||||||||| ||| |   ||| |||| | ||||||||  |||||||||||||| || ||||||||||||||||    
T  24691633 ttaatacttgtattatttgcagagttcggcaaa---cctgaagccacattatgcaatctgtttttctcatatcgctgggatgattcttttt 24691546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 55 - 175
Target Start/End: Complemental strand, 24719080 - 24718960
Alignment:
Q  55 acaatttagggatttaatacttgatttgtcacagtacttgaggagcatgaagaatttacaattcattgcgactgtttacaaaaatggtagttaatacatg 154  Q
    ||||||||||||||||||| ||| |||||||  |||||||||||||||||||||||||||||||||||| ||| |||  |||||||||||||||||||||    
T  24719080 acaatttagggatttaataattggtttgtcattgtacttgaggagcatgaagaatttacaattcattgcaactatttcaaaaaatggtagttaatacatg 24718981  T
Q  155 tattatttgcagagttcagca 175  Q
    |||||| ||||||||||||||    
T  24718980 tattatatgcagagttcagca 24718960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 294 - 408
Target Start/End: Complemental strand, 24682827 - 24682714
Alignment:
Q  294 tactctcaaattagaaatttgcaaggatttttctttgttggttgttcccttattgatattatttatgattagtttctagattttccttttgcatatgata 393  Q
    |||||||||||||||| || |||||||||| || |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  24682827 tactctcaaattagaa-ttagcaaggatttctcgttgttggttgttcccttattgatattgtttatgattagtttccagattttccttttgcatatgata 24682729  T
Q  394 atgttgatttttatg 408  Q
    |||||| ||||||||    
T  24682728 atgttgttttttatg 24682714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 647 - 738
Target Start/End: Complemental strand, 24682715 - 24682624
Alignment:
Q  647 tgacattattcctatcagctatgccttccctgctgctctaaggtagattttcatactaaatataaatgttattagtgaatattgatcacagt 738  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  24682715 tgacattattcctatcagctatgccttccctgctgctctaaggtagattttcttactaaatctaaatattattagtgaatattgatcacagt 24682624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 45 - 243
Target Start/End: Complemental strand, 24652513 - 24652319
Alignment:
Q  45 ttcttttctcacaatttagggatttaatacttgatttgtcacagtacttgaggagcatgaagaatttacaattcattgcgactgtttacaaaaatggtag 144  Q
    ||||||||||||||||||||| || |||| ||| ||| |||| || ||||| ||||  ||||||| ||| ||||||||| |||||||   ||||| ||||    
T  24652513 ttcttttctcacaatttaggggttgaatagttggtttttcactgttcttgatgagccagaagaatgtacgattcattgcaactgtttcgtaaaattgtag 24652414  T
Q  145 ttaatacatgtattatttgcagagttcagcagacctcctcaagcaatattatgcatcctgtttttctcatagcgttgggatgattctttttggtggtct 243  Q
    ||||||||||||||||||||||||||||||| |     ||||||||||||||||| ||||||||| |  ||  |||||||||||||| |||||||||||    
T  24652413 ttaatacatgtattatttgcagagttcagcaaa---aatcaagcaatattatgcaacctgttttt-ttgtacggttgggatgattctatttggtggtct 24652319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 149 - 265
Target Start/End: Complemental strand, 24686299 - 24686186
Alignment:
Q  149 tacatgtattatttgcagagttcagcagacctcctcaagcaatattatgcatcctgtttttctcatagcgttgggatgattctttttggtggtctccttg 248  Q
    ||||||||||||||||||| ||||||| || ||   ||||||||||||||| |||||||||||| || || ||| ||| |||||||||||||||||||||    
T  24686299 tacatgtattatttgcagaattcagcaaacatc---aagcaatattatgcaacctgtttttctcgtatcgctggaatggttctttttggtggtctccttg 24686203  T
Q  249 taccctgtgtaagattt 265  Q
     ||||  ||||||||||    
T  24686202 cacccaatgtaagattt 24686186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 47 - 246
Target Start/End: Complemental strand, 24632778 - 24632584
Alignment:
Q  47 cttttctcacaatttagggatttaatacttgatttg-tcacagtacttgaggagcatgaagaatttacaattcattgcgactgtttacaaaaatggtagt 145  Q
    ||||||||||||||||||||||||||| | | |||  |||| || |||||  ||||||||||||||||| |  ||||| |  ||||  ||||||||||||    
T  24632778 cttttctcacaatttagggatttaataatcggttttatcactgttcttgat-agcatgaagaatttacattagattgcaagggtttcgaaaaatggtagt 24632680  T
Q  146 t-aatacatgtattatttgcagagttcagcagacctcctcaagcaatattatgcatcctgtttttctcatagcgttgggatgattctttttggtggtctc 244  Q
    | || |||||||||||||||||||||||||| |   |||  ||||||||||||| ||||||||||||| || | |  | |||||| ||||||||||||||    
T  24632679 ttaacacatgtattatttgcagagttcagcaaa---ccttgagcaatattatgc-tcctgtttttctcgtatcct--gaatgattatttttggtggtctc 24632586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 24713915 - 24713764
Alignment:
Q  45 ttcttttctcacaatttagggatttaatacttgatttgtcacagtacttgaggagcatgaagaatttacaattcattgcgactgtttacaaaaatggtag 144  Q
    ||||||||||||||||||||||||||||| ||| |||| ||   | ||| | ||||| |||||||||||| || | ||| |  ||||  |||||||||||    
T  24713915 ttcttttctcacaatttagggatttaataattggtttgccattattcttaatgagcaggaagaatttacattttagtgcaagggtttcgaaaaatggtag 24713816  T
Q  145 ttaatacatgtattatttgcagagttcagcagacctcctcaagcaatattatgca 199  Q
    || |||| ||||| || |||||||||||||| |   | |||||||||||||||||    
T  24713815 ttgatacttgtataatatgcagagttcagcaaa---catcaagcaatattatgca 24713764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 24686365 - 24686296
Alignment:
Q  45 ttcttttctcacaatttagggatttaatacttgatttgtcacagtacttgaggagcatgaagaatttaca 114  Q
    ||||||||||||||||||||| ||||||  ||| |||||||  || ||||| ||||||||||||||||||    
T  24686365 ttcttttctcacaatttagggttttaattattggtttgtcattgttcttgacgagcatgaagaatttaca 24686296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 797 - 876
Target Start/End: Complemental strand, 24653945 - 24653865
Alignment:
Q  797 gtgtgacttaccaatcaattattcgtctaaggattttatgctcaatga-ttttaggatgcagctaagtaacctatctcttt 876  Q
    ||||||||||||||||||||||| ||  |||||||  | |||||| || |||||||||| |||||||||| ||||||||||    
T  24653945 gtgtgacttaccaatcaattatttgttgaaggattccaagctcaaggatttttaggatgaagctaagtaatctatctcttt 24653865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 437
Target Start/End: Complemental strand, 24713705 - 24713626
Alignment:
Q  355 tttatgattagtttctagattttccttttgcatatgataatgttgatttttatgtttgttttcatttacttgagtgttattga 437  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||   |||| |||||||| | ||||| ||| |||||||||||    
T  24713705 tttattattagattctagattttccttttgcatatgttaatgt---ttttcatgtttgtgtccatttgcttcagtgttattga 24713626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 24717142 - 24717081
Alignment:
Q  134 aaaaatggtagtta-atacatgtattatttgcagagttcagcagacctcctcaagcaatattatg 197  Q
    |||||||||||||  |||||||||||||||||||||||||||| |   |||||||||||||||||    
T  24717142 aaaaatggtagtttgatacatgtattatttgcagagttcagcaaa---cctcaagcaatattatg 24717081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 450
Target Start/End: Complemental strand, 24686108 - 24686023
Alignment:
Q  365 gtttctagattttccttttgcatatgataatgttgatttttatgtttgttttcatttacttgagtgttattgagatactaaacaca 450  Q
    ||||| |||||| |||| ||||||||||||||||  |||| |  ||||||| ||||| ||  ||||||||||| |||||| |||||    
T  24686108 gtttccagatttgccttctgcatatgataatgttatttttcacatttgtttccattttctctagtgttattgaaatactatacaca 24686023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 4037575 - 4037617
Alignment:
Q  192 attatgcatcctgtttttctcatagcgttgggatgattctttt 234  Q
    |||||||| ||||||||||||||| ||||||||||||||||||    
T  4037575 attatgcaacctgtttttctcatatcgttgggatgattctttt 4037617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 25384702 - 25384739
Alignment:
Q  9 gatccatgtagccaacctcacttagttggaaaaggctt 46  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  25384702 gatccatgtagccaacctcacttagtgggataaggctt 25384739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 4001504 - 4001467
Alignment:
Q  9 gatccatgtagccaacctcacttagttggaaaaggctt 46  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  4001504 gatccatgtagccaaccccacttagtgggaaaaggctt 4001467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University