View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5864-Insertion-3 (Length: 438)

Name: NF5864-Insertion-3
Description: NF5864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5864-Insertion-3
NF5864-Insertion-3
[»] chr1 (4 HSPs)
chr1 (8-438)||(5443949-5444394)
chr1 (350-427)||(8757286-8757363)
chr1 (357-393)||(13350808-13350844)
chr1 (350-382)||(35997042-35997074)
[»] chr8 (2 HSPs)
chr8 (339-400)||(42445800-42445859)
chr8 (356-415)||(20523858-20523917)
[»] chr7 (3 HSPs)
chr7 (339-427)||(23982034-23982120)
chr7 (350-393)||(24250158-24250201)
chr7 (339-399)||(32958536-32958594)
[»] chr3 (4 HSPs)
chr3 (351-427)||(21177048-21177123)
chr3 (350-393)||(35381829-35381872)
chr3 (350-382)||(41259965-41259997)
chr3 (350-394)||(52910400-52910444)
[»] chr4 (2 HSPs)
chr4 (350-393)||(28091341-28091384)
chr4 (353-395)||(49582574-49582616)
[»] chr6 (3 HSPs)
chr6 (350-400)||(2556252-2556302)
chr6 (350-380)||(21023698-21023728)
chr6 (353-382)||(8176975-8177004)
[»] chr5 (2 HSPs)
chr5 (350-380)||(43406016-43406046)
chr5 (350-395)||(31478700-31478745)
[»] chr2 (2 HSPs)
chr2 (350-384)||(9294134-9294168)
chr2 (339-392)||(44287845-44287896)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 5443949 - 5444394
Alignment:
Q  8 atatactttgcacactatttatgctcgacatggatttgccatttccatttgaaatttcattttcatgttgttatacaacaaaaagcttatgaattgatac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  5443949 atatactttgcacactatttatgctcgacatggatttgccatttccatttgaaatttcattttcatgttgttatacaacaagaagtttatgaattgatac 5444048  T
Q  108 taacggttatgcatgacctttttatgtcaagaaaaagcaaatatcatacaattaattatcagttaaatatccctcaaaatttcagttcatggacttttat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5444049 taacggttatgcatgacctttttatgtcaagaaaaagcaaatatcatacaattaattatcagttaaatatccctcaaaatttcagttcatggacttttat 5444148  T
Q  208 tacaaaaatggtggaattctagtctattgactacttga------------------aagtagacttatagatcatataagaaatattannnnnnnggaca 289  Q
    ||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||       |||||    
T  5444149 tacaaaaatggtggaattctagtctattgactacttgaaaaaacatttagacatttaagtagacttatagatcatataagaaatattatttttttggaca 5444248  T
Q  290 aaaataattaagctannnnnnnncttcttcaattagcctagtgaccctaggctagattcacacacacattatgtgtggagaagtggagaattcagagttc 389  Q
    |||||||||||||||         ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  5444249 aaaataattaagctatttttt---ttcttcaattagcctagtggcactatgctagattcacacacacattatgtgtggagaagtgaagaattcggagttc 5444345  T
Q  390 gaactctgacctcggtacataatgtccctggtagctactgattaaacta 438  Q
    ||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  5444346 gaactctgatcccggtacataatgtccctggtagctacggattaaacta 5444394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 8757286 - 8757363
Alignment:
Q  350 cacacacattatgtgtggagaagtggagaattcagagttcgaactctgacctcggtacataatgtccctggtagctac 427  Q
    ||||||||||||||||||||| |||| |||| ||| |||||||| | | || | | |||||||||| |||||||||||    
T  8757286 cacacacattatgtgtggagacgtggggaatccagggttcgaaccccggcccctgcacataatgtctctggtagctac 8757363  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 13350844 - 13350808
Alignment:
Q  357 attatgtgtggagaagtggagaattcagagttcgaac 393  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  13350844 attatgtgtggagaagtggaaaattcggagttcgaac 13350808  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 35997074 - 35997042
Alignment:
Q  350 cacacacattatgtgtggagaagtggagaattc 382  Q
    ||||||||||||||||| |||||||||||||||    
T  35997074 cacacacattatgtgtgaagaagtggagaattc 35997042  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 42445859 - 42445800
Alignment:
Q  339 ggctagattcacacacacattatgtgtggagaagtggagaattcagagttcgaactctgacc 400  Q
    |||||||||||||  |||||||||||| || ||||||| |||||||||||||||| ||||||    
T  42445859 ggctagattcaca--cacattatgtgtagaaaagtggataattcagagttcgaaccctgacc 42445800  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 415
Target Start/End: Original strand, 20523858 - 20523917
Alignment:
Q  356 cattatgtgtggagaagtggagaattcagagttcgaactctgacctcggtacataatgtc 415  Q
    |||| |||||||||||||| |||||   ||||||||||||||||||  ||||||||||||    
T  20523858 cattgtgtgtggagaagtgaagaatctggagttcgaactctgacctttgtacataatgtc 20523917  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 427
Target Start/End: Complemental strand, 23982120 - 23982034
Alignment:
Q  339 ggctagattcacacacacattatgtgtggagaagtggagaattcagagttcgaactctgacctcggtacataatgtccctggtagctac 427  Q
    |||||||||||||  |||||||||||  ||||| |||||||| | ||||||||||||| ||||| | ||| | | ||||||||||||||    
T  23982120 ggctagattcaca--cacattatgtgcagagaaatggagaatccggagttcgaactctaacctctgcacaaattatccctggtagctac 23982034  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 393
Target Start/End: Original strand, 24250158 - 24250201
Alignment:
Q  350 cacacacattatgtgtggagaagtggagaattcagagttcgaac 393  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  24250158 cacacacattatgtgtggaaaagtggagaatccagggttcgaac 24250201  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 32958594 - 32958536
Alignment:
Q  339 ggctagattcacacacacattatgtgtggagaagtggagaattcagagttcgaactctgac 399  Q
    |||||||||||||  ||||||| ||||||| ||||||||||| | | ||||||||||||||    
T  32958594 ggctagattcaca--cacattaagtgtggataagtggagaatccggggttcgaactctgac 32958536  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 427
Target Start/End: Original strand, 21177048 - 21177123
Alignment:
Q  351 acacacattatgtgtggagaagtggagaattcagagttcgaactctgacctcggtacataatgtccctggtagctac 427  Q
    ||||||||||||||||||||||||| ||||||   ||||||||| ||||| | ||||| | |||| |||||||||||    
T  21177048 acacacattatgtgtggagaagtggggaattcgaggttcgaactttgacc-ctgtacaaattgtctctggtagctac 21177123  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 393
Target Start/End: Original strand, 35381829 - 35381872
Alignment:
Q  350 cacacacattatgtgtggagaagtggagaattcagagttcgaac 393  Q
    ||||| ||||||||||| |||||||| |||||||||||||||||    
T  35381829 cacacgcattatgtgtgaagaagtggggaattcagagttcgaac 35381872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 382
Target Start/End: Original strand, 41259965 - 41259997
Alignment:
Q  350 cacacacattatgtgtggagaagtggagaattc 382  Q
    |||||||||||||||||||||||||| ||||||    
T  41259965 cacacacattatgtgtggagaagtggggaattc 41259997  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 394
Target Start/End: Original strand, 52910400 - 52910444
Alignment:
Q  350 cacacacattatgtgtggagaagtggagaattcagagttcgaact 394  Q
    |||||||||||||||||||||||||| ||||| || ||| |||||    
T  52910400 cacacacattatgtgtggagaagtggggaatttagggtttgaact 52910444  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 393
Target Start/End: Original strand, 28091341 - 28091384
Alignment:
Q  350 cacacacattatgtgtggagaagtggagaattcagagttcgaac 393  Q
    |||||||||||||||||||||||||| |||||  ||||||||||    
T  28091341 cacacacattatgtgtggagaagtggggaatttggagttcgaac 28091384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 395
Target Start/End: Original strand, 49582574 - 49582616
Alignment:
Q  353 acacattatgtgtggagaagtggagaattcagagttcgaactc 395  Q
    |||||||||||||| ||||||||||||||| | ||||||||||    
T  49582574 acacattatgtgtgaagaagtggagaattcggggttcgaactc 49582616  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 2556252 - 2556302
Alignment:
Q  350 cacacacattatgtgtggagaagtggagaattcagagttcgaactctgacc 400  Q
    |||||||||||| |||| |||||||||||||||  | ||||||||||||||    
T  2556252 cacacacattatatgtgaagaagtggagaattcgaaattcgaactctgacc 2556302  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 380
Target Start/End: Original strand, 21023698 - 21023728
Alignment:
Q  350 cacacacattatgtgtggagaagtggagaat 380  Q
    |||||||||||||||||||||||||||||||    
T  21023698 cacacacattatgtgtggagaagtggagaat 21023728  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 382
Target Start/End: Complemental strand, 8177004 - 8176975
Alignment:
Q  353 acacattatgtgtggagaagtggagaattc 382  Q
    ||||||||||||||||||||||||||||||    
T  8177004 acacattatgtgtggagaagtggagaattc 8176975  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 380
Target Start/End: Original strand, 43406016 - 43406046
Alignment:
Q  350 cacacacattatgtgtggagaagtggagaat 380  Q
    |||||||||||||||||||||||||||||||    
T  43406016 cacacacattatgtgtggagaagtggagaat 43406046  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 31478700 - 31478745
Alignment:
Q  350 cacacacattatgtgtggagaagtggagaattcagagttcgaactc 395  Q
    |||||||||||||||| |||||||||||||| |  |||||||||||    
T  31478700 cacacacattatgtgtagagaagtggagaatccgaagttcgaactc 31478745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Original strand, 9294134 - 9294168
Alignment:
Q  350 cacacacattatgtgtggagaagtggagaattcag 384  Q
    |||||||||||||||||||||||||| ||||||||    
T  9294134 cacacacattatgtgtggagaagtggtgaattcag 9294168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 44287896 - 44287845
Alignment:
Q  339 ggctagattcacacacacattatgtgtggagaagtggagaattcagagttcgaa 392  Q
    |||||||||||||  |||||||||||||||||||||| |||| | |||||||||    
T  44287896 ggctagattcaca--cacattatgtgtggagaagtggggaatccggagttcgaa 44287845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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