View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5864_low_1 (Length: 258)
Name: NF5864_low_1
Description: NF5864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5864_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 43775275 - 43775041
Alignment:
| Q |
1 |
atacacttatttaatgtaaattcaacaattgctctagctaaagtcaatataatgaagaggcatttacatgcctggaattttgtgagagcttcattcaaat |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| ||| ||||||||||| |||||||| | | ||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
43775275 |
atacacttctttaatgtaaattcaactattattctagctaaagccaatataaagcataggcatttacatgcctggaatttcgcaagagcttcattcaaat |
43775176 |
T |
|
| Q |
101 |
agggccatggttgagtactgtcttcctgagtgcttctccatgattcagcaaaacttttaatatactcatccagcacctgcaggacatcatattttattac |
200 |
Q |
| |
|
|||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
43775175 |
agggccatggttcagtactgtctgcctgaatgcttctccatgattcaccaaaacttttaatatattcatccagcacctgcaggacatcatattttataac |
43775076 |
T |
|
| Q |
201 |
catctagtaaaaccagttaaataacatgcatcagat |
236 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| |
|
|
| T |
43775075 |
catctagtaaaa-caattaaataacatgcatcagat |
43775041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University