View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5865-Insertion-3 (Length: 442)
Name: NF5865-Insertion-3
Description: NF5865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5865-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Original strand, 6211068 - 6211488
Alignment:
| Q |
8 |
actaatgagacaagttcaaatcatgaagtagagaagcaataaatttgcatagctgtctctttaatggcaacaaaaaacttgtgctactcctccttttaca |
107 |
Q |
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| T |
6211068 |
actaatgagacaagttcaaatcatgaagtagagaagcaataaatttgcatagctgtctctttaatgacaacaaaaaacttgtgctgctactccttttaca |
6211167 |
T |
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| Q |
108 |
acctgtcattgcaaaaggccaacacaaacgtgccttttgctttaagattgttggaaccttctatacctcagcgtatactcgcataaccccgcattgagat |
207 |
Q |
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| T |
6211168 |
acctgtcattgcaaaaggccaacacaaacgtgctttttgctttaagattgttggaaccttctatacctcagcgtatactcgcataaccccgcattgagat |
6211267 |
T |
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| Q |
208 |
ttcttcattttctctgtcccatgtcttttttaaggggatgattgtattttagctataggtttggtcatgtaaattatagtcatatggttcaattcatcca |
307 |
Q |
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| T |
6211268 |
ttcttcattttctctgtcccatgtcttttttaaggggatgattgtattttagctataggtttggtcatgtaaattatagtcatatggttcaattcatcca |
6211367 |
T |
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| Q |
308 |
ataaatgactgttttgatctctttgaagtgttgaacattttattgtatgattaaaacatagagaagccagtaacttacatcaagtaactggcattgagat |
407 |
Q |
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| T |
6211368 |
ataaatgactgttttgatctctttgaagtgttgaacattttattgtatgattaaaacatagagaagcc--------------agtaactggcattgagat |
6211453 |
T |
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| Q |
408 |
gtacatacatacatcacattaaccgctactactaa |
442 |
Q |
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| T |
6211454 |
gtacatacatacatcacattaaccgctaatactaa |
6211488 |
T |
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