View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5865-Insertion-6 (Length: 128)
Name: NF5865-Insertion-6
Description: NF5865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5865-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 76; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 9172070 - 9172185
Alignment:
| Q |
13 |
cgtctatgaaagctgtgatgcaaatgatgcaaagagatggagacaacttaaaagttccctgcaacccttttggacctacaacttcatctaatacaactac |
112 |
Q |
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| T |
9172070 |
cgtctatgaaaactgtgatgcaaatgctgcaaggagatggagacaagttacaagttccttcaaacccttatggacctacaacttcatctaatacaactac |
9172169 |
T |
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| Q |
113 |
tagtattgttgcacca |
128 |
Q |
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| T |
9172170 |
taatattgttgcacca |
9172185 |
T |
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Target: chr1 (Bit Score: 53; Significance: 8e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 9257054 - 9256982
Alignment:
| Q |
14 |
gtctatgaaagctgtgatgcaaatgatgcaaagagatggagacaacttaaaagttccctgcaacccttttgga |
86 |
Q |
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| T |
9257054 |
gtctatgaaagatgtgatgcaaatgctgaaaggagatggagacaacttaaaagtttcctgcaacccttttgga |
9256982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 9466269 - 9466165
Alignment:
| Q |
18 |
atgaaagctgtgatgcaaatgatgcaaagagatggagacaacttaaaagttccctgcaacccttttggacctacaacttcatctaatacaactactagta |
117 |
Q |
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| T |
9466269 |
atgaaaactgtgatacaaatgctacaaggtgatggagacaagttaaaagtccccagcaatccttttgggcctacaacttcaactaattcaactgctagta |
9466170 |
T |
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| Q |
118 |
ttgtt |
122 |
Q |
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| T |
9466169 |
ctgtt |
9466165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 9238409 - 9238474
Alignment:
| Q |
60 |
ttaaaagttccctgcaacccttttggacctacaacttcatctaatacaactactagtattgttgca |
125 |
Q |
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| T |
9238409 |
ttaaaagttccctccaacccttttggatctacagcttcagcaaataaaactactattaatgttgca |
9238474 |
T |
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