View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866-Insertion-2 (Length: 852)
Name: NF5866-Insertion-2
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 662; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 9 - 736
Target Start/End: Complemental strand, 52844798 - 52844073
Alignment:
| Q |
9 |
ttagtgtggtagcatttgaattaagaaggtctctaacagcttcattatatatttccaaggcagagaacttcacaataaactctctttctttatgctgaga |
108 |
Q |
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| T |
52844798 |
ttagtgtggtagcatttgaattaagaaggtctctaacagcttcattatatatttccaaggcagagaacttcacaataaactctctttctttatgctgaga |
52844699 |
T |
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| Q |
109 |
tacaagnnnnnnnntgtcannnnnnnnnnngtcaaaaatcaaacaatatcgtctattcaaattgttttataccttttctatgtattcatagatatccttc |
208 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52844698 |
tacaagaaaaaaaatgtcattttttttt--gtcaaaaatcaaacaatatcgtctattcaaattgttttataccttttctatgtattcatagatatccttc |
52844601 |
T |
|
| Q |
209 |
actgcaagttcagtaattccagtcatggtatatgtctttccactgcttgtttgcccatacgcgaaaatgctagctgagattaaaattcattgatgaaaaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52844600 |
actgcaagttcagtaattccagtcatggtatatgtctttccactgcttgtttgcccatacgcgaaaatgctagctgagattaaaattcattgatgaaaaa |
52844501 |
T |
|
| Q |
309 |
caaaaatgaaattttgatcagccaccataacaatagataaataaaatcaccaagcatataacaagaacgggaataatattactcacagttgataccccta |
408 |
Q |
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| T |
52844500 |
caaaaatgaaattttgatcagccaccataacaatagataaataaaatcaccaagcatataacaagaacgggaataatattactcacagttgataccccta |
52844401 |
T |
|
| Q |
409 |
attactgaaagggcaacttccttaatcccttgctcataaacctgcttagtgggacatttttctccaaataccctatctgcttccaacaaatcatctataa |
508 |
Q |
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| T |
52844400 |
attactgaaagggcaacttccttaatcccttgctcataaacctgcttagtgggacatttttctccaaataccctatctgcttccaacaaatcatcgataa |
52844301 |
T |
|
| Q |
509 |
aatatgagtaggaattcaaaaaacaaaatgcttcaaaatctatcaatcatattaatattcatgtaaccatgtgatttgactcaagtagttaatgagattc |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52844300 |
aatatgagtaggaattcaaaaaacaaaatgcttcaaaatctatcaatcatattaatattcatgtaaccatgtgatttgactcaagtagttaatgagattc |
52844201 |
T |
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| Q |
609 |
acgaaacaatgaaaatgttcggggattccaagtttgattcgtgagttgaacaatattcggtcatgttttacttactatttgtcgaacacaggattacatg |
708 |
Q |
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| T |
52844200 |
acgaaacaatgaaaatgttcggggattccaagtttgattcgtgagttgaacaatattcggtcatgttttacttactatttgtcgaacacaggattacatg |
52844101 |
T |
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| Q |
709 |
gatgctgacctttgagaatttgagggtt |
736 |
Q |
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| T |
52844100 |
gatgctgacctttgagaatttgagggtt |
52844073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 810 - 852
Target Start/End: Complemental strand, 52843999 - 52843957
Alignment:
| Q |
810 |
tcaacataatgaacatgtttactaccaaatgtatatgtatccg |
852 |
Q |
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| T |
52843999 |
tcaacataatgaacatgtttactaccaaatgtatatgtatccg |
52843957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 27278037 - 27277964
Alignment:
| Q |
212 |
gcaagttcagtaattccagtcatggtatatgtctttccactgcttgtttgcccatacgcgaaaatgctagctga |
285 |
Q |
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|||| |||||| |||||| ||| |||||||||||||||||||||||||||||||| || ||||| || ||||| |
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| T |
27278037 |
gcaaattcagttattccaaccatagtatatgtctttccactgcttgtttgcccatatgcaaaaatactcgctga |
27277964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 32260724 - 32260657
Alignment:
| Q |
218 |
tcagtaattccagtcatggtatatgtctttccactgcttgtttgcccatacgcgaaaatgctagctga |
285 |
Q |
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| T |
32260724 |
tcagtaataccactcatggtgtatgtctttccactgcttgtttgtccatatgcaaatatgcttgctga |
32260657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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