View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5866-Insertion-4 (Length: 597)
Name: NF5866-Insertion-4
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866-Insertion-4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 9 - 597
Target Start/End: Complemental strand, 36269315 - 36268729
Alignment:
| Q |
9 |
gatcaaaggaacaattatgtgcaaactgaggcttgcacttataatactgcaccattagttagagtttttgcaaaattcttgcaaatagggaatagaaggt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36269315 |
gatcaaaggaacaattatgtgcaaactgaggcttgcacttataatactgcaccattagttggagtttttgcaaaattcttgcaaatagggaatagaaggt |
36269216 |
T |
|
| Q |
109 |
tggttcatgattctgattcacttttagttgcttccttttaaatactnnnnnnnnnnnnnngtcaaagcacaatagtatattattgtcaaaagtcaattaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36269215 |
tggttcatgattctgattcacttttagttgcttccttttaaatacttatatatatata--gtcaaagcacaatagtatattattgtcaaaagtcaattaa |
36269118 |
T |
|
| Q |
209 |
attcttcagttttccccctattttatgagtgatattttagcttaaagaatgtannnnnnncttaaacaaatttttataaatttgttaatattatagtggc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36269117 |
attcttcagttttccccctattttatgagtgatattttagcttaaagaatgtatttttttcttaaacaaatttttataaatttgttaatattatagtggc |
36269018 |
T |
|
| Q |
309 |
aaaagattgaatgtgtgtcaaatttttgatttgttaattcttaaatacatgcaaaacatcaaaatgtatttagtccaaatttacaccaaatacattttga |
408 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36269017 |
aaaagattgaatgtgtgtcaaatttttgagttgttaattcttaaatacatgcaaaacatcaaaatgtatttagtccaaatttacaccaaatacattttga |
36268918 |
T |
|
| Q |
409 |
cttttggttatattttaaactagagatattatctgtgaaaacactcaatggtcattggatcatgatagaaatctaaatgcactcggggccaacgactcta |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
36268917 |
cttttggttatattttaaactagagatattatctgtgaaaacactcaatggtcattggatcatgatacaaatctaaatgcatccggggccaacgactcta |
36268818 |
T |
|
| Q |
509 |
caactattgtgcacatggatcctaaagctaattttattaaaatcctcaatgtcctatccaatagatattacaatcaaatcaattgatga |
597 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36268817 |
caactattgtgcatatggatcctaaagctaatttcattaaaatcctcaatgtcctatccaatagatattacaatcaaatcaattgatga |
36268729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 433
Target Start/End: Complemental strand, 34555662 - 34555596
Alignment:
| Q |
367 |
tcaaaatgtatttagtccaaatttacaccaaatacattttgacttttggttatattttaaactagag |
433 |
Q |
| |
|
|||||| |||||||| ||| || | |||||||||||||||||||||| |||||||| |||| |||| |
|
|
| T |
34555662 |
tcaaaacgtatttagcccagataaagaccaaatacattttgacttttgcttatatttaaaaccagag |
34555596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 423
Target Start/End: Complemental strand, 24202453 - 24202397
Alignment:
| Q |
367 |
tcaaaatgtatttagtccaaatttacaccaaatacattttgacttttggttatattt |
423 |
Q |
| |
|
||||||||||||||| |||||| | || |||||||||||||||||| |||||||| |
|
|
| T |
24202453 |
tcaaaatgtatttagctcaaattgatactaaatacattttgacttttatttatattt |
24202397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University