View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5866-Insertion-5 (Length: 475)

Name: NF5866-Insertion-5
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5866-Insertion-5
NF5866-Insertion-5
[»] chr4 (1 HSPs)
chr4 (9-475)||(39093006-39093479)


Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 9 - 475
Target Start/End: Original strand, 39093006 - 39093479
Alignment:
Q  9 aaatgcctccaagacaaaccaagaaaaaccgatgggaacttgaagcacacctaagactgagaacctaaagcaacaataaaacaacaaaagattctcacga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39093006 aaatgcctccaagacaaaccaagaaaaaccgatgggaacttgaagcacacctaagactgagaacctaaagcaacaagaaaacaacaaaagattctcacga 39093105  T
Q  109 ccttaatactttatgcaactctgtgatagaaacctcatagctacaatattttattatctcagtatcaattgtgcacctacaccagctcctatagatagga 208  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39093106 ccttaatactttatgcaactctg--atagaaacctcatagctacaatattttattatctcagtatcaattgtgcacctacaccagctcctatagatagga 39093203  T
Q  209 accaactatcttagattaatatatattcttataggtgtattctttttctcttggttaataattaataatacacccatggttcccgtgtgaatactataat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39093204 accaactatcttagattaatatatattcttataggtgtattctttttctcttggttaataattaataatacacccatggttcccgtgtgaatactataat 39093303  T
Q  309 aattagcctatgcacgtcattatcttaaaaaatattgccattatgataaac---------cgtgtataaaaatgttgagaaaattactcttatgtcatta 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  39093304 aattagcctatgcacgtcattatcttaaaaaatattgccattatgataaaccgtgtatctcgtgtataaaaatgttgagaaaattactcttatgtcatta 39093403  T
Q  400 accaaattttaattttcgtgtctcaacaattttgagattcaattatgtatatattgtattagagatgccgaagggg 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39093404 accaaattttaattttcgtgtctcaacaattttgagattcaattatgtatatattgtattagagatgcccaagggg 39093479  T

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