View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_high_10 (Length: 587)
Name: NF5866_high_10
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_high_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Original strand, 38913316 - 38913885
Alignment:
| Q |
18 |
aaaggttgggtgattcatatctggatgtcggagaatcttaccagaagctcagaaaattcaacaaggcaatcaaatggtatgaaaagagttggaaaatgta |
117 |
Q |
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| T |
38913316 |
aaaggttgggtgattcatatctggatgtcggagaatcttaccagaagctcagaaaattcaacaaggcaatcaaatggtatgaaaagagttggaaaatgta |
38913415 |
T |
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| Q |
118 |
caaaacaattggcaacttagaggtaaattttcatcattttatgatataaacttaacacttctgttctcttcttcttcttcctgactttaatttaattcaa |
217 |
Q |
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| T |
38913416 |
caaaacaattggcaacttagaggtaaattttcatcattttatgatataaacttaacacttctgttctcttcttcttcttcctgactttaatttaattcaa |
38913515 |
T |
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| Q |
218 |
cataacataaaagctgaatataagaaaatctatagttattcaaaacattggtaatgtgagtatatttctatttggttgtttttatatgaaatacaaatac |
317 |
Q |
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| T |
38913516 |
cataacataaaagctgaatataagaaaatctatagttattcaaaacattggtaatgtgagtatatttctatttggttgtttttatatgaaatacaaatac |
38913615 |
T |
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| Q |
318 |
tttgaaagaggagccatgtgtatgttagaatagattctaacatattctatgggttatacagcaatccaaatggagtataacctttgacacagaaattaag |
417 |
Q |
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| T |
38913616 |
tttgaaagaggagccatgtgtatgttagaatagattctaacatattctatgggttatacagcaatccaaatggagtataacctttgacacagaaattaag |
38913715 |
T |
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| Q |
418 |
caggcagatttgttttataataaaatatggaccatgtatacacattaagaatttcttctgtgttacagtcagacatgtatcaaacacccatattatatct |
517 |
Q |
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| T |
38913716 |
caggcagattcgttttataataaaatatggaccatgtatacacattaagaatttcttctgtgttacagtcagacatgtatcaaacacccatattatatct |
38913815 |
T |
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| Q |
518 |
aacatgcatgggcacttcaaatcctgatgcgacccttcaacttttctgtatatgcatgtcaagtccattc |
587 |
Q |
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| T |
38913816 |
aacatgcatgggcacttcaaatcctgatgcgacccttcaacttttctgtatatgcatgtcaagtccattc |
38913885 |
T |
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