View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_high_12 (Length: 540)
Name: NF5866_high_12
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 25 - 531
Target Start/End: Complemental strand, 10119671 - 10119164
Alignment:
| Q |
25 |
taagcaatacaaagagatgaattactccactaggcatggaaatcaaaaggcaaactaggcatgagcaccttaacctaccatcatgaattaagtttcaccc |
124 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10119671 |
taagcaatacaaagagatgaattactccaccaggcatggaaatcaaaaggcaaactaggcatgagcaccttaacctaccatcatgaattaagtttcaccc |
10119572 |
T |
|
| Q |
125 |
tatcaacaatcagtgagatagacgactccttgttttgaaaaatctggatattcctctcctttcaaacaatgcaaatggtcaccatccaaattatttaaaa |
224 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
10119571 |
tatcaacaatcagggagatagacgactccttattttgaaaaatccggatattcctctcctttcaaataatgcaaatggtcaccatccaaattatttgaaa |
10119472 |
T |
|
| Q |
225 |
gcaagtgtgaatatcttttctgagcagatggtcaccaacaaattgtggagcaagcataccaaaatttgaagaaagatcaatagagattctcagtcaatgc |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10119471 |
gcaagtgtgaatatcttttctgagcagatggtcaccaacaaattgtgaagcaagcataccaaaatttgaagaaagatcaatagagattcttagtcaatgc |
10119372 |
T |
|
| Q |
325 |
ataatggagtaccaaacattgcgataaaaattacagtctnnnnnnnnntggttaacttctcattaatgcagccactcgagcataagaaagaacctggttg |
424 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
10119371 |
ataatgaagtaccaaacattgcgataaaaattacagtctaaaaacaaatggttaacttctcattaatgcaaccactcgagcataagagagaacctggttg |
10119272 |
T |
|
| Q |
425 |
aagaattccacgacgagacaaactattcttagtcggga-tattttgctcagcaactatcacgttaagagagacacttttatagatagtgatttgttcctg |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
10119271 |
aagaattccacgacgagacaaactattcttagtcgggattcttttgctcagcaactatcacgctaagagagacacttttatagatagtgatttgttccag |
10119172 |
T |
|
| Q |
524 |
atgatgtc |
531 |
Q |
| |
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|||||||| |
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| T |
10119171 |
atgatgtc |
10119164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 22 - 363
Target Start/End: Complemental strand, 40155581 - 40155246
Alignment:
| Q |
22 |
gaataagcaatacaaagagatgaattactccactaggcatggaaatcaaaaggcaaactaggcatgagcaccttaacctaccatcatgaattaagtttca |
121 |
Q |
| |
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|||||| ||||||||| |||| ||||||||| | ||||||||||| ||| | ||| ||||||| | ||| |||||| |||| |||||||||||||||| |
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| T |
40155581 |
gaataaccaatacaaacagattgattactccatcaagcatggaaatcgaaaagtaaagtaggcattaacactttaacccaccaccatgaattaagtttca |
40155482 |
T |
|
| Q |
122 |
ccctatcaacaatcagtgagatagacgactccttgttttgaaaaatctggatattcctctcctttcaaacaatgcaaatggtcaccatccaaattattta |
221 |
Q |
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| T |
40155481 |
ccttgtcaacaatgtggaagatagacgactccttattttgaaaaatcatgagattacgctccttctaaattattcaaatggttgtcatccaaatcatttg |
40155382 |
T |
|
| Q |
222 |
aaagcaagtgtgaatatcttttctgagcagatggtcaccaacaaattgtggagcaagcataccaaaatttgaagaaagatcaatagagattctcagtcaa |
321 |
Q |
| |
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|||||||||| |||||| |||||||| ||||| | ||||||||||||| | |||||||||| ||| | ||||| |||| | ||||||| | | |
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| T |
40155381 |
aaagcaagtgcgaatatattttctgaacagatagacaccaacaaattgagaagcaagcataacaatttatgaaggaagaagagtagagatcccc------ |
40155288 |
T |
|
| Q |
322 |
tgcataatggagtaccaaacattgcgataaaaattacagtct |
363 |
Q |
| |
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||||||||||||||||||||||||| ||| ||| ||| |||| |
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| T |
40155287 |
tgcataatggagtaccaaacattgccatagaaactaccgtct |
40155246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 7223981 - 7223881
Alignment:
| Q |
31 |
atacaaagagatgaattactccactaggcatggaaatcaaaaggcaaactaggcatgagcaccttaacctaccatcatgaattaagtttcaccctatcaa |
130 |
Q |
| |
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||||||||||||| |||| ||||| |||||| |||| |||| ||| |||||||| |||||||| | ||||||||| || |||||||||||| |||| |
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| T |
7223981 |
atacaaagagatggattagtccacctggcatgaaaattgaaagataaaataggcatgtacaccttaaaccaccatcatggatgaagtttcaccctgtcaa |
7223882 |
T |
|
| Q |
131 |
c |
131 |
Q |
| |
|
| |
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| T |
7223881 |
c |
7223881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 17887043 - 17887155
Alignment:
| Q |
22 |
gaataagcaatacaaagagatgaattactccactaggcatggaaatcaaaaggcaaactaggcatgagcaccttaacctaccatcatgaattaagtttca |
121 |
Q |
| |
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|||||| ||| ||||||||||| ||||||||| |||||||| | ||||||| ||||| ||| | | |||||||| | |||| || |||| ||||| | |
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| T |
17887043 |
gaataaccaagacaaagagatgggttactccaccaggcatggtagtcaaaagctaaacttggcttaaacaccttaaaccaccaccaagaatgcagtttta |
17887142 |
T |
|
| Q |
122 |
ccctatcaacaat |
134 |
Q |
| |
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||||||||||||| |
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| T |
17887143 |
ccctatcaacaat |
17887155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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