View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5866_high_14 (Length: 515)
Name: NF5866_high_14
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 9 - 498
Target Start/End: Complemental strand, 19394743 - 19394254
Alignment:
| Q |
9 |
gagatgaattcgtaggccgggacatgggatttagaaacacagctggtgcaataaaggaacaagccgtggccgccagagtccaagcagattgctccatatt |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19394743 |
gagatggattcgtaggccgggacatgggatttagaaacacagccggtgcaataaaggaacaagccgtggccgccagagtccaagcagattgctccatatt |
19394644 |
T |
|
| Q |
109 |
cgtcaactgcaacttcgaaggttaccaagacacactatacgcacaaacccacagacaattctaccgcgactgtgtcatttctggcacaatcgatttcatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19394643 |
cgtcaactgcaacttcgaaggttaccaagacacactatacgcacaaacccacagacaattctaccgcgactgtgtcatttctggcacaatcgatttcatc |
19394544 |
T |
|
| Q |
209 |
ttcggccatgcctccgcagtcttccaaaactgccaattggttcttagaaagccacttgacaaccnnnnnnncatcattacagcgaatggaagaatcgact |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19394543 |
ttcggccatgcctccgcagtcttccaaaactgccaattggttcttagaaagccacttgacaaccaaaaaaacatcattacagcgaatggaagaatcgact |
19394444 |
T |
|
| Q |
309 |
caaaatcaaacaccgcattcgtcttacaaaaatgtgtcatcaagggtgaggatgacctaccttcaacaaccaaaaactacattggaagaccatggaagga |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19394443 |
caaaatcaaacaccgcattcgtcttacaaaaatgtgtcatcaagggtgaggatgacctaccttcaacaaccaagaactacattggaagaccatggaagga |
19394344 |
T |
|
| Q |
409 |
atattcaaggacaattatcatggaatctgacattcctgcattgattcaacctgaaggttggttaccttgggaaggtgattttgcactaaa |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19394343 |
atattcaaggacaattatcatggaatctgacattcctgcattgattcaacctgaaggttggttaccttgggaaggtgattttgcactaaa |
19394254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 8731578 - 8731526
Alignment:
| Q |
162 |
gacaattctaccgcgactgtgtcatttctggcacaatcgatttcatcttcggc |
214 |
Q |
| |
|
|||||||||||||||||||| ||| | || ||||||||||||||||||||| |
|
|
| T |
8731578 |
gacaattctaccgcgactgtcacatatacggaacaatcgatttcatcttcggc |
8731526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 49865189 - 49865137
Alignment:
| Q |
128 |
ggttaccaagacacactatacgcacaaacccacagacaattctaccgcgactg |
180 |
Q |
| |
|
||||||||||| ||||| ||| ||||| || | |||||||||||||||||||| |
|
|
| T |
49865189 |
ggttaccaagatacactctacacacaatccaaaagacaattctaccgcgactg |
49865137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 49871126 - 49871074
Alignment:
| Q |
128 |
ggttaccaagacacactatacgcacaaacccacagacaattctaccgcgactg |
180 |
Q |
| |
|
||||||||||| ||||| ||| ||||| || | |||||||||||||||||||| |
|
|
| T |
49871126 |
ggttaccaagatacactctacacacaatccaaaagacaattctaccgcgactg |
49871074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 153
Target Start/End: Complemental strand, 37165452 - 37165424
Alignment:
| Q |
125 |
gaaggttaccaagacacactatacgcaca |
153 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37165452 |
gaaggttaccaagacacactatacgcaca |
37165424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University