View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5866_high_15 (Length: 501)
Name: NF5866_high_15
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Original strand, 39093006 - 39093485
Alignment:
| Q |
19 |
aaatgcctccaagacaaaccaagaaaaaccgatgggaacttgaagcacacctaagactgagaacctaaagcaacaataaaacaacaaaagattctcacga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39093006 |
aaatgcctccaagacaaaccaagaaaaaccgatgggaacttgaagcacacctaagactgagaacctaaagcaacaagaaaacaacaaaagattctcacga |
39093105 |
T |
|
| Q |
119 |
ccttaatactttatgcaactctgtgatagaaacctcatagctacaatattttattatctcagtatcaattgtgcacctacaccagctcctatagatagga |
218 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39093106 |
ccttaatactttatgcaactctg--atagaaacctcatagctacaatattttattatctcagtatcaattgtgcacctacaccagctcctatagatagga |
39093203 |
T |
|
| Q |
219 |
accaactatcttagattaatatatattcttataggtgtattctttttctcttggttaataattaataatacacccatggttcccgtgtgaatactataat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39093204 |
accaactatcttagattaatatatattcttataggtgtattctttttctcttggttaataattaataatacacccatggttcccgtgtgaatactataat |
39093303 |
T |
|
| Q |
319 |
aattagcctatgcacgtcattatcttaaaaaatattgccattatgataaac---------cgtgtataaaaatgttgagaaaattactcttatgtcatta |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39093304 |
aattagcctatgcacgtcattatcttaaaaaatattgccattatgataaaccgtgtatctcgtgtataaaaatgttgagaaaattactcttatgtcatta |
39093403 |
T |
|
| Q |
410 |
accaaattttaattttcgtgtctcaacaattttgagattcaattatgtatatattgtattagagatgccgaaggggcctttg |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39093404 |
accaaattttaattttcgtgtctcaacaattttgagattcaattatgtatatattgtattagagatgcccaaggggcctttg |
39093485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University