View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_high_20 (Length: 455)
Name: NF5866_high_20
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 32956417 - 32956160
Alignment:
| Q |
1 |
taactctaacaatgattctcttcttgctcgtcgatgtgctagctgtgactccacttctacacccctttggaggaatggtcctcgtggccctaaggtaaaa |
100 |
Q |
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| T |
32956417 |
taactctaacaatgattctcttcttgctcgtcgttgtgctagctgtgactccacttctacacccctttggaggaatggtcctcgtggccctaaggtaaaa |
32956318 |
T |
|
| Q |
101 |
atacattaccaataccacctttgtgtctatgttcaaaatatatgagccaagacctcgtagtagactataaatgttcggcaaaaatcatttatagcttact |
200 |
Q |
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| T |
32956317 |
atacattaccaataccatctttgtgtctatgttcaaaatatatgagccgagacctcgtagtagactataaatgttcggcaaaaatcatttataacttact |
32956218 |
T |
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| Q |
201 |
aggtctcagct-----gtaagagtttgactttgttagatatgagacaatgtcatgcta |
253 |
Q |
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|||||| |||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32956217 |
aggtctgagctcaggagtaagagtttgactttgttagataggagacaatgtcatgcta |
32956160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 319 - 436
Target Start/End: Complemental strand, 32956094 - 32955977
Alignment:
| Q |
319 |
aataatggttgaattgaaattgcagtcactatgcaatgcttgtgggattagatacaagaaggaagagagaagagcaaacgccgcggttgccacgacagcc |
418 |
Q |
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| T |
32956094 |
aataatggttgaattgaaattgcagtcactatgcaatgcttgtgggattagatacaagaaggaagagagaagagcgaacgccgcggttgccacgacagct |
32955995 |
T |
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| Q |
419 |
gcgactaacggcggcata |
436 |
Q |
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| T |
32955994 |
gcgactaacggtggcata |
32955977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 7723517 - 7723610
Alignment:
| Q |
8 |
aacaatgattctcttcttgctcgtcgatgtgctagctgtgactccacttctacacccctttggaggaatggtcctcgtggccctaaggtaaaaa |
101 |
Q |
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|||||||||||||||||||||||| ||||||| | ||||||| |||| || ||||| ||||||||||| || ||||| ||||| |||||||||| |
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| T |
7723517 |
aacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaacggccctcgaggcccaaaggtaaaaa |
7723610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 395
Target Start/End: Original strand, 7723680 - 7723739
Alignment:
| Q |
336 |
aattgcagtcactatgcaatgcttgtgggattagatacaagaaggaagagagaagagcaa |
395 |
Q |
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|||| |||||| |||||||||| |||||||| |||| ||||||||||||||||||||||| |
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| T |
7723680 |
aattacagtcattatgcaatgcatgtgggatcagattcaagaaggaagagagaagagcaa |
7723739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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