View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5866_high_27 (Length: 436)
Name: NF5866_high_27
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_high_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 55954223 - 55954647
Alignment:
| Q |
1 |
aatgaatgtggcaaactttttctgttctagcaataaatatgtatcgcatctgctgcacaacgttggatagtgttacattttaatttatacaaaaagtcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55954223 |
aatgaatgtggcaaactttttctgttctagcaataaatatgtatcgcatctgctgcacaacgttggatagtgttacattttaatttatacaaaaagtcta |
55954322 |
T |
|
| Q |
101 |
gaatatgacaacaaaatatgattgtattgtagttgcagaggatctatgtttgcaaaatgcatagcaaaagggaaatatattggatgatctcaaatagaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55954323 |
gaatatgacaacaaaatatgattgtattgtagttgcagaggatctatgtttgcaaaatgcatagcaaaagggaaatatattggatgatctcaaatagaat |
55954422 |
T |
|
| Q |
201 |
aaagtgctgacaatgaatttttgttacaagtgctgacgataattttttgaagggaataatcaaataggaaaatgctatgattagcaaagaagggaaatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55954423 |
aaagtgctgacaatgaatttttgttacaagtgctgacgataattttttgaagggaataatcaaataggaaaatgctatgattagcaaagaagggaaatga |
55954522 |
T |
|
| Q |
301 |
tatgtatagcggnnnnnnntgcacgaatccatcacgataag----tattttagttacctgcttacctgatttttgttaattccggacatttgccactgag |
396 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
55954523 |
tatgtatagcggaaaaaaatgcacgaatccatcacgataagtgtatattttagttacctgcttacctgatttttgttaattccggacatctgccactgag |
55954622 |
T |
|
| Q |
397 |
tcattttaactataatacatgtttc |
421 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
55954623 |
tcattttaactataatacatgtttc |
55954647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University