View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5866_high_30 (Length: 431)
Name: NF5866_high_30
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_high_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Original strand, 5810610 - 5811016
Alignment:
| Q |
8 |
tagcaaaggttcagccacagcccttatgcattgtgccacattgtatccatcatcaaattgatcccaattatcgagagcattccaatttacttcagaaacc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
5810610 |
tagcaaaggttcagccacagcccttatgcattgtgccacattgtatccatcattaaaatgatcccaattgtcaagagcattccaatttacttcagaaacc |
5810709 |
T |
|
| Q |
108 |
tctaatcgactgatggagaatgatccttcagtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5810710 |
tctaatcgactgatggagaatgatccttcggtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttct |
5810809 |
T |
|
| Q |
208 |
cttggtcaatgattccctgcggcataataatatgcatattaatagttaa-nnnnnnnncttcaaaattttggaattttttctcatattcacccacgtatt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5810810 |
cttggtcaatgattccctgcggcataataatatgcatattaatagttaatttttttttcttcaaaattttggaa-tttttctcatattcacccacgtatt |
5810908 |
T |
|
| Q |
307 |
tattgtgttctatgaccattttctaaattaatatgaacaagaaaaaattatcatagtctacctgcaaaaccatatcattaagagccatagccatgagttc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5810909 |
tattgtgttctatgaccattttctaaattaatatgaacaagaaaaaattatcatagtctacctgcaaaaccatatcattaagagccatagccatgagttc |
5811008 |
T |
|
| Q |
407 |
ccaaatgt |
414 |
Q |
| |
|
|||||||| |
|
|
| T |
5811009 |
ccaaatgt |
5811016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 72 - 233
Target Start/End: Original strand, 27736007 - 27736168
Alignment:
| Q |
72 |
caattatcgagagcattccaatttacttcagaaacctctaatcgactgatggagaatgatccttcagtgagaacttccaactcaacctcagatggagatg |
171 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||||||| ||| | ||||| |||||||||||| ||||||||||||||| || ||||||||||||| |
|
|
| T |
27736007 |
caatcatcaagagcattccaattaacttcagaaacctccaatttattgatgacaaatgatccttcattgagaacttccaacttcacttcagatggagatg |
27736106 |
T |
|
| Q |
172 |
gataatagttagggatgttgaaactattgagtttctcttggtcaatgattccctgcggcata |
233 |
Q |
| |
|
||||||| ||||||||||||||| |||||| |||||||| || ||||||||||||| ||||| |
|
|
| T |
27736107 |
gataataattagggatgttgaaagtattgattttctcttcgttaatgattccctgcagcata |
27736168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 27735910 - 27735963
Alignment:
| Q |
8 |
tagcaaaggttcagccacagcccttatgcattgtgccacattgtatccatcatc |
61 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
27735910 |
tagcaaaggttcagccacagccctaatgcattgtgccatattgtatccatcatc |
27735963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 27736240 - 27736289
Alignment:
| Q |
365 |
tacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgt |
414 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27736240 |
tacctgcaagaccatatcattaagggccatagccatgagttcccaaatgt |
27736289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 32626905 - 32627116
Alignment:
| Q |
8 |
tagcaaaggttcagccacagcccttatgcattgtgccacattgtatccatcatc----aa--attga---tcccaattatcgagagcattccaatttact |
98 |
Q |
| |
|
||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || ||| | || ||| ||| ||||||||||||| ||| |
|
|
| T |
32626905 |
tagcaaaggttcagccaaagctctcatgcattgtgccacattgtatccatcatctccgaatgattcagattcaaaatcatcacgagcattccaattcact |
32627004 |
T |
|
| Q |
99 |
tcagaaacctctaatcgactgatggagaatgatccttcagtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactat |
198 |
Q |
| |
|
||||| | ||| | | || | ||| |||||||||||||| | ||||||||| | || |||||||||||||||||||| |||| ||||||||| ||| |
|
|
| T |
32627005 |
tcagatatctcgagttgattcatgacaaatgatccttcagtaataacttccaatttcacttcagatggagatggataatatataggaatgttgaaagtat |
32627104 |
T |
|
| Q |
199 |
tgagtttctctt |
210 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32627105 |
tgagtttctctt |
32627116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 32702691 - 32702743
Alignment:
| Q |
11 |
caaaggttcagccacagcccttatgcattgtgccacattgtatccatcatcaa |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
32702691 |
caaaggttcagccacagcccttatgcattgtgccacatcgtatccattatcaa |
32702743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 32708923 - 32708972
Alignment:
| Q |
365 |
tacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgt |
414 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
32708923 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgt |
32708972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 32703480 - 32703538
Alignment:
| Q |
353 |
attatcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaa |
411 |
Q |
| |
|
||||||||||| ||||||||| ||||| ||||||||| |||||||||| | |||||||| |
|
|
| T |
32703480 |
attatcatagtttacctgcaagaccatttcattaagacccatagccataacttcccaaa |
32703538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 32708666 - 32708779
Alignment:
| Q |
81 |
agagcattccaatttacttcagaaacctctaatcgactgatggagaatgatccttcagtgagaacttccaactcaacctcagatggagatggataatagt |
180 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||| ||||| ||||||||||| ||||||||||||| | || || |||||||||||| || | |
|
|
| T |
32708666 |
agagcattccaattcacttcagaaactcccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgtatt |
32708765 |
T |
|
| Q |
181 |
tagggatgttgaaa |
194 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32708766 |
gagggatgttgaaa |
32708779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 7297160 - 7297212
Alignment:
| Q |
126 |
aatgatccttcagtgagaacttccaactcaacctcagatggagatggataata |
178 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| ||| |||| ||||||||||| |
|
|
| T |
7297160 |
aatgatccttcattgagaacttctaactcaacttcatatggtgatggataata |
7297212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 32627333 - 32627391
Alignment:
| Q |
356 |
atcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgt |
414 |
Q |
| |
|
|||||| | ||||| ||| ||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
32627333 |
atcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgt |
32627391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 20117983 - 20117882
Alignment:
| Q |
126 |
aatgatccttcagtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctcttggtcaatgattccct |
225 |
Q |
| |
|
||||| |||||||| ||||||||||| | || |||| ||||||||||||||||||||||| |||||| ||||||| |||||| || |||||||||| |
|
|
| T |
20117983 |
aatgacccttcagttagaacttccaatttcacttcagttggagatggataatagttagggagattgaaagtattgagggtctcttcttctatgattccct |
20117884 |
T |
|
| Q |
226 |
gc |
227 |
Q |
| |
|
|| |
|
|
| T |
20117883 |
gc |
20117882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 21941867 - 21941968
Alignment:
| Q |
126 |
aatgatccttcagtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctcttggtcaatgattccct |
225 |
Q |
| |
|
|||||| ||||||| |||||||||| | | ||||||||||||||| ||||| |||| ||||||||| ||||||||||||||| || |||||||||| |
|
|
| T |
21941867 |
aatgattcttcagttagaacttccacttttatttcagatggagatggaaaatagataggaatgttgaaagtattgagtttctcttcttctatgattccct |
21941966 |
T |
|
| Q |
226 |
gc |
227 |
Q |
| |
|
|| |
|
|
| T |
21941967 |
gc |
21941968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 21943082 - 21943132
Alignment:
| Q |
360 |
tagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaa |
410 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21943082 |
tagtctacctgcataaccatatcattaagagccatagccaaaagttcccaa |
21943132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University