View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_high_33 (Length: 405)
Name: NF5866_high_33
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_high_33 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 66 - 405
Target Start/End: Complemental strand, 4824075 - 4823736
Alignment:
| Q |
66 |
ggtccagaaaacacacttaggaatgtttaagtttcgattcattcaaagactataatgacgctatctcacatatttaaagaccagatgactatttactcac |
165 |
Q |
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| T |
4824075 |
ggtccagaaaacacacttaggaatgtttaagtttcgattcattcaaagactataatgacgctatctcacatatttaaggaccagatgactatttactcac |
4823976 |
T |
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| Q |
166 |
agtttggagtagtatgagcaactgaaggaagtagtaagaggctcctccaattgtagcatacttcaacttctcttttccttcaacgtctgagaaatcatcg |
265 |
Q |
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| T |
4823975 |
agtttggagtagtatgagcaactgaaggaagtagtaagaggctcctccaattgtagcatacttcaacttctcttttccttcaacgtctgagaaatcatcg |
4823876 |
T |
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| Q |
266 |
tcttttgaacgactaaagcctccaactatccatccaagatttctgtagcctccattatacagctttgaagttgctgtcattgacctgaatagtcactcac |
365 |
Q |
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| T |
4823875 |
tcttttgaacgactaaagcctccaactaaccatccaagatttctgtaacctccattatacagctttgaagttgctgtcattgacctgaatagtcactcac |
4823776 |
T |
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| Q |
366 |
caatcaatattttgcttcattgtcataataataaactttt |
405 |
Q |
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| T |
4823775 |
caatcaatattttgcttcattgtcataataataaactttt |
4823736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 4824416 - 4824363
Alignment:
| Q |
12 |
ttcaatgtaccaattttggagtgtttactcacttctataagtaactgacaggaa |
65 |
Q |
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| T |
4824416 |
ttcaatgtaccaattttggagtgtttactcacttctataagaaactgacaggaa |
4824363 |
T |
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