View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_high_39 (Length: 387)
Name: NF5866_high_39
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_high_39 |
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| [»] scaffold0655 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 17805249 - 17804967
Alignment:
| Q |
15 |
tataagatcattttaaaattttcatacacagtatactgnnnnnnnnagggaattatacatccatggactttgacatactcttttgtattcgtcattctaa |
114 |
Q |
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| T |
17805249 |
tataagattattataaaattttcatatgcagtatactgttttttttagggaattatacattcatggactttgacatactcttttgtattcgtcattcgaa |
17805150 |
T |
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| Q |
115 |
gttggaagtgtcgtgaacacatttcaacttgcgggagactattaaagttatagttagctagtcattagaagtgttagttaattagtaactagtggatata |
214 |
Q |
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| T |
17805149 |
gttggaagtgtcgtgaacacaattcaacttgcgggagattattaaagttatagttagctagtcattagaagtgttagttaattcgtagctagtgg----a |
17805054 |
T |
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| Q |
215 |
tgcctaggctttgatgtactcttttaattcatcttttatcaatctatactcatttaacatgttttcatttggcattctaccttgtga |
301 |
Q |
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| T |
17805053 |
tgcctaggctttgatgtactcttttaattcatcttttatcaatctatactcatttaacatgttttcatttggcattctaccttgtga |
17804967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 316 - 370
Target Start/End: Complemental strand, 17802662 - 17802607
Alignment:
| Q |
316 |
atttatactagcatattctagaaattgg-aacaacaataatttaaacagatatatg |
370 |
Q |
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| T |
17802662 |
atttataccagcatattctagaaattgggaacaataataatttaaacagatatatg |
17802607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 11815049 - 11815124
Alignment:
| Q |
94 |
cttttgtattcgtcattctaagttggaagtgtcgtgaacacatttcaacttgcgggagactattaaagttatagtt |
169 |
Q |
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| T |
11815049 |
cttttgtattgttcatcccaagttggaagtgttgtaaacaccttccaacttgcgggagactattagagatatagtt |
11815124 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 39850449 - 39850352
Alignment:
| Q |
94 |
cttttgtattcgtcattctaagttggaagtgtcgtgaacacatttcaa-cttgcgggagactattaaagttatagttagctagtcattagaagtgtta |
190 |
Q |
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| T |
39850449 |
cttttgtattggtcatcttaagttggaagtgtggtgaacacgttccaaacatgtgaaagtttattgaagttatagttagctagtcattagaagagtta |
39850352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 571 - 625
Alignment:
| Q |
113 |
aagttggaagtgtcgtgaacacatttcaacttgcgggagactattaaagttatag |
167 |
Q |
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| T |
571 |
aagttggaagtgttgtgaacaccttccaacttgcgggggactattagagatatag |
625 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 23612224 - 23612296
Alignment:
| Q |
97 |
ttgtattcgtcattctaagttggaagtgtcgtgaacacatttcaacttgcgggagactattaaagttatagtt |
169 |
Q |
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| T |
23612224 |
ttgtattgttcatcctgagttggaagtgttgtgaacaccttccaacttgcgagggactattagagatatagtt |
23612296 |
T |
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