View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5866_high_40 (Length: 385)

Name: NF5866_high_40
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5866_high_40
NF5866_high_40
[»] chr4 (10 HSPs)
chr4 (1-385)||(24894635-24895017)
chr4 (113-184)||(55520939-55521010)
chr4 (29-185)||(40197828-40197980)
chr4 (117-185)||(29010105-29010173)
chr4 (121-187)||(24799393-24799459)
chr4 (26-112)||(53711783-53711869)
chr4 (27-88)||(47533704-47533765)
chr4 (125-186)||(55521061-55521122)
chr4 (125-185)||(9675061-9675121)
chr4 (113-185)||(47533817-47533889)
[»] chr3 (3 HSPs)
chr3 (113-185)||(1699932-1700004)
chr3 (30-103)||(1700041-1700113)
chr3 (118-186)||(40362073-40362141)
[»] chr2 (7 HSPs)
chr2 (25-88)||(37210215-37210278)
chr2 (29-115)||(29927697-29927783)
chr2 (30-107)||(3256966-3257043)
chr2 (29-112)||(32978970-32979053)
chr2 (29-103)||(38342360-38342433)
chr2 (26-103)||(28814663-28814740)
chr2 (125-185)||(15333273-15333333)
[»] chr6 (7 HSPs)
chr6 (113-186)||(32549403-32549476)
chr6 (28-88)||(1038296-1038356)
chr6 (29-88)||(32549528-32549587)
chr6 (113-187)||(214734-214808)
chr6 (112-185)||(11004298-11004371)
chr6 (126-185)||(3626972-3627031)
chr6 (113-185)||(3626850-3626920)
[»] chr1 (8 HSPs)
chr1 (113-185)||(28190485-28190557)
chr1 (113-186)||(3360486-3360559)
chr1 (117-185)||(31507345-31507413)
chr1 (113-185)||(28190603-28190675)
chr1 (125-185)||(39939317-39939377)
chr1 (146-187)||(7438811-7438852)
chr1 (26-87)||(9688336-9688397)
chr1 (125-185)||(7438883-7438943)
[»] chr7 (9 HSPs)
chr7 (29-88)||(20183029-20183088)
chr7 (28-112)||(33487283-33487367)
chr7 (126-185)||(35582188-35582247)
chr7 (117-187)||(33487181-33487251)
chr7 (128-187)||(5998462-5998521)
chr7 (29-177)||(42082747-42082891)
chr7 (28-90)||(25244177-25244239)
chr7 (127-186)||(30458107-30458166)
chr7 (117-187)||(35582303-35582374)
[»] chr5 (5 HSPs)
chr5 (113-186)||(11674161-11674234)
chr5 (33-90)||(40767210-40767267)
chr5 (27-90)||(39043523-39043586)
chr5 (125-184)||(38739180-38739239)
chr5 (117-187)||(39043598-39043668)
[»] scaffold0027 (2 HSPs)
scaffold0027 (125-179)||(48578-48632)
scaffold0027 (117-181)||(48687-48751)
[»] chr8 (2 HSPs)
chr8 (117-185)||(31661518-31661586)
chr8 (113-185)||(34646283-34646355)


Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 24894635 - 24895017
Alignment:
Q  1 taaaataaagtgcatgtttttcttatttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||| |||||||    
T  24894635 taaaataaagtgcat-tttttcttatttgaaaattgatgttcccacatcaaaggttgtaatgaaacaccacaaaattaccaatataactttattggcagt 24894733  T
Q  101 taattgctgatggatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttcttcttattcatactt 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24894734 taattgttgatggatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttcttcttattcatactt 24894833  T
Q  201 catgaaattaaaatacacacatttgtttgattttcatggatgcttcaagcacccaccatttattttgctgcttctttcttctcaccccaaaccgggttct 300  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24894834 catgaaa-taaaatacacacatttgtttgattttcatggatgcttcaagcacccaccatttattttgctgcttctttcttctcaccccaaaccgggttct 24894932  T
Q  301 tcattttctcctctttcaaaattttcttcatgtactgctgcttcccaacctcctccttctcctccacgaccttcatatcctcctc 385  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24894933 tcattttctcctctttcaaaattttcttcatgtactcctgcttcccaacctccttcttctcctccacgaccttcatatcctcctc 24895017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 55521010 - 55520939
Alignment:
Q  113 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaatttt 184  Q
    |||| |||||| || ||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||||    
T  55521010 gatgtaatttggggctaaacttgtcatttcatggtgtttcttagctttgtgtgaagtgggaaaaacaatttt 55520939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 40197828 - 40197980
Alignment:
Q  29 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatggatggaatttgaggtt 128  Q
    |||||||| ||||||||||| |||||||||    ||| ||||  |||||| ||||||||| | |  ||||||||| ||| |||||||    |||| ||||    
T  40197828 gaaaattgttgttcccacatcaaaggttgctcataaaaaccatgaaattatcaatataacttcatcggcagttaactgccgatggat----tttggggtt 40197923  T
Q  129 aaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    ||| || | ||||||  |||||||||||||||||||||||||| ||||  |||||||    
T  40197924 aaatttatcattttatagtgtttcttagcattgtgtgaagtggaaaaaggaattttc 40197980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 29010105 - 29010173
Alignment:
Q  117 gaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||  ||||||| ||||| || |||||    
T  29010105 gaatttgaggttaaatttgtcattttatggtgtttcttagcattgaatgaagtgtgaaaagcatttttc 29010173  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 24799393 - 24799459
Alignment:
Q  121 ttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttctt 187  Q
    |||| |||||||||||| ||| | ||||||||||  | |||| ||||||||||||||||||||||||    
T  24799393 ttgaagttaaacttgtgttttcatggtgtttcttgactttgtttgaagtgggaaaaacaattttctt 24799459  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 53711869 - 53711783
Alignment:
Q  26 tttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatg 112  Q
    |||||||||||||| || ||  ||||||||||| ||||||||||||||| ||||||| |||| || |  ||||||||| || |||||    
T  53711869 tttgaaaattgatgctctcatcttaaaggttgctatgaaacaccacaaatttaccaacataatctcatgggcagttaactgttgatg 53711783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 47533704 - 47533765
Alignment:
Q  27 ttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 88  Q
    ||||||||||  ||||| |||||||||||||  | ||||||||||||| |||||||||||||    
T  47533704 ttgaaaattgtcgttcctacattaaaggttgttaggaaacaccacaaatttaccaatataac 47533765  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 55521061 - 55521122
Alignment:
Q  125 ggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttct 186  Q
    |||||||||||| |||| | ||||||||||||| |||| ||||||| ||||| |||||||||    
T  55521061 ggttaaacttgttatttcatggtgtttcttagctttgtttgaagtgtgaaaagcaattttct 55521122  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 9675061 - 9675121
Alignment:
Q  125 ggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    ||||||||||||||||| |  |||||||||| | |||||||||||| ||||| ||||||||    
T  9675061 ggttaaacttgtgatttcatagtgtttcttaactttgtgtgaagtgagaaaagcaattttc 9675121  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 47533817 - 47533889
Alignment:
Q  113 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    |||| |||||||||||||| || | |||| |  |||||||||||||||| |||||||| ||||  ||||||||    
T  47533817 gatgaaatttgaggttaaatttatcatttaattgtgtttcttagcattgcgtgaagtgtgaaaggcaattttc 47533889  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 1700004 - 1699932
Alignment:
Q  113 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    ||||||||||||||||||| |||| |||| | |||||||||||||||||||||||||| |||| |||||||||    
T  1700004 gatggaatttgaggttaaatttgttatttcatggtgtttcttagcattgtgtgaagtgtgaaagacaattttc 1699932  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 1700113 - 1700041
Alignment:
Q  30 aaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaa 103  Q
    ||||||||||||||||| || |||||||| | ||||||| |  ||||||||||||||| || || |||||||||    
T  1700113 aaaattgatgttcccac-ttcaaggttgctaggaaacactatgaaattaccaatataatctcaccggcagttaa 1700041  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 40362073 - 40362141
Alignment:
Q  118 aatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttct 186  Q
    |||||| ||||||| || | |||||| |||||||||||||||||| |||| || ||||  |||||||||    
T  40362073 aatttggggttaaatttttcattttatggtgtttcttagcattgtatgaaatgtgaaaggcaattttct 40362141  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 37210215 - 37210278
Alignment:
Q  25 atttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 88  Q
    |||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||    
T  37210215 atttgaaaattgatgttcccacatcaaaggttgctaggaaacaccacgaaattaccaatataac 37210278  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 29927697 - 29927783
Alignment:
Q  29 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatggat 115  Q
    |||| ||| ||||||||||| ||||||||  | |||||||||| |||||||||||||||||| |  ||||||||| |||||||||||    
T  29927697 gaaatttgttgttcccacatcaaaggttgataggaaacaccacgaaattaccaatataacctcatcggcagttaactgctgatggat 29927783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 3256966 - 3257043
Alignment:
Q  30 aaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgc 107  Q
    ||||||| | ||||||||||||||||||| | ||||||||||||||||||||| ||||||| |  |||| ||||||||    
T  3256966 aaaattgttattcccacattaaaggttgctacgaaacaccacaaaattaccaacataacctcatcggcaattaattgc 3257043  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 32978970 - 32979053
Alignment:
Q  29 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatg 112  Q
    |||||||| ||||||||||| | ||||||| | ||||||||||||||||| |||||||| || | ||| |||||| ||| ||||    
T  32978970 gaaaattgttgttcccacatcataggttgctaggaaacaccacaaaattatcaatataaactcattggtagttaactgccgatg 32979053  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 38342433 - 38342360
Alignment:
Q  29 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaa 103  Q
    |||||||| ||||||||| | |||| |||| |||||||||||| |||||||||||||||||| |  |||||||||    
T  38342433 gaaaattgttgttcccacgtcaaag-ttgctatgaaacaccacgaaattaccaatataacctcatcggcagttaa 38342360  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 28814663 - 28814740
Alignment:
Q  26 tttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaa 103  Q
    ||||||||||||||||||||  ||||||||||  |||||| ||||| ||||||  ||||||| |||| || |||||||    
T  28814663 tttgaaaattgatgttcccaagttaaaggttgttatgaaataccacgaaattattaatataatcttattgacagttaa 28814740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 15333273 - 15333333
Alignment:
Q  125 ggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    |||||||||||| |||||| | ||||||||| | |||| ||||||||||||| ||||||||    
T  15333273 ggttaaacttgtcattttatgatgtttcttaactttgtttgaagtgggaaaagcaattttc 15333333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 32549476 - 32549403
Alignment:
Q  113 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttct 186  Q
    |||| |||||| |||||||||||| |||| | ||||||||||||||||||||||| || |||||||||||||||    
T  32549476 gatgaaatttggggttaaacttgtcatttaatggtgtttcttagcattgtgtgaaatgtgaaaaacaattttct 32549403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 1038296 - 1038356
Alignment:
Q  28 tgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 88  Q
    ||||||||||||||||||||| ||||||||  ||||||||| |||||||||||||||||||    
T  1038296 tgaaaattgatgttcccacatcaaaggttgttatgaaacacaacaaaattaccaatataac 1038356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 32549587 - 32549528
Alignment:
Q  29 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 88  Q
    |||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||||||||    
T  32549587 gaaaattgatgttcccacatcaaaagttgctatgaaacaccacgaaattaccaatataac 32549528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 214808 - 214734
Alignment:
Q  113 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttctt 187  Q
    |||| ||||||| |||||| |||| |||| |   |||||||||||||||| ||||||||||||||||||||||||    
T  214808 gatgtaatttgaagttaaatttgtcatttcataatgtttcttagcattgtatgaagtgggaaaaacaattttctt 214734  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 11004298 - 11004371
Alignment:
Q  112 ggatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    |||||||||||| |||||||||||| ||||||   ||||||||||| ||||||||||||| ||||  |||||||    
T  11004298 ggatggaatttggggttaaacttgtcattttataatgtttcttagctttgtgtgaagtggaaaaagaaattttc 11004371  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 3626972 - 3627031
Alignment:
Q  126 gttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    ||||||||||| |||||| ||||||||||| | |||| ||| ||||||||||||||||||    
T  3626972 gttaaacttgtaattttatggtgtttcttaactttgtttgatgtgggaaaaacaattttc 3627031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 3626920 - 3626850
Alignment:
Q  113 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    |||||||||||  ||||||||||| |||| | ||||||| ||| |  ||||||||||||||||| ||||||||    
T  3626920 gatggaatttgcagttaaacttgttatttcatggtgttttttaac--tgtgtgaagtgggaaaagcaattttc 3626850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 28190557 - 28190485
Alignment:
Q  113 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    |||| ||||||||||||||||||| |||| | |||||||||| || |||||||||||||||||| ||||||||    
T  28190557 gatgaaatttgaggttaaacttgtcatttcatggtgtttctttgctttgtgtgaagtgggaaaagcaattttc 28190485  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 3360486 - 3360559
Alignment:
Q  113 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttct 186  Q
    ||||||||||||| ||||| |||| |||| | ||||||||||| | |||| |||||||| ||||||||||||||    
T  3360486 gatggaatttgagattaaaattgtcatttcatggtgtttcttaactttgtttgaagtggaaaaaacaattttct 3360559  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 31507345 - 31507413
Alignment:
Q  117 gaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    |||||| ||||||||||| | |||| | ||||||||||||  ||||||||| |||||||||||||||||    
T  31507345 gaatttaaggttaaacttatcatttcatggtgtttcttagttttgtgtgaaatgggaaaaacaattttc 31507413  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 28190603 - 28190675
Alignment:
Q  113 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    |||| ||||||||||||||||||| |||| | | ||||||||||   ||| ||||||||||||| ||||||||    
T  28190603 gatgaaatttgaggttaaacttgtcatttaatgttgtttcttagttctgtttgaagtgggaaaagcaattttc 28190675  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 39939317 - 39939377
Alignment:
Q  125 ggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    |||||||||| | |||| | ||||||||||||| |||| |||||||||||||| |||||||    
T  39939317 ggttaaacttatcatttcatggtgtttcttagctttgtttgaagtgggaaaaataattttc 39939377  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 7438852 - 7438811
Alignment:
Q  146 gtgtttcttagcattgtgtgaagtgggaaaaacaattttctt 187  Q
    |||||||||||| |||| ||||||||||||||||| ||||||    
T  7438852 gtgtttcttagctttgtttgaagtgggaaaaacaactttctt 7438811  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 9688397 - 9688336
Alignment:
Q  26 tttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataa 87  Q
    |||||||||||||||||||| || || ||| |  |||||||||||| ||||||| |||||||    
T  9688397 tttgaaaattgatgttcccatatgaatggtggatatgaaacaccacgaaattactaatataa 9688336  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 7438883 - 7438943
Alignment:
Q  125 ggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    |||||||||||| |||| |  || ||| ||||| |||| ||||||||||||||||||||||    
T  7438883 ggttaaacttgtcatttcatagtattttttagctttgtatgaagtgggaaaaacaattttc 7438943  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 20183029 - 20183088
Alignment:
Q  29 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 88  Q
    |||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||    
T  20183029 gaaaattgatgttcccacgttaaaggttgctataaaacaccacaaaattatcaatataac 20183088  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 33487367 - 33487283
Alignment:
Q  28 tgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatg 112  Q
    ||||||||||||||||| ||| |||| |||| |||||||||||| |||||| |||||||||| ||  ||||||||| ||| ||||    
T  33487367 tgaaaattgatgttcccgcatcaaagattgctatgaaacaccacgaaattatcaatataaccctatgggcagttaactgccgatg 33487283  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 35582247 - 35582188
Alignment:
Q  126 gttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    ||||||||| | |||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  35582247 gttaaacttattatttcacggtgtttcttagctttgtttgaagtgggaaaaacaattttc 35582188  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 33487251 - 33487181
Alignment:
Q  117 gaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttctt 187  Q
    |||||||| |||||| |||| |||||| ||||||||||||||||| || ||||| ||||| ||||||||||    
T  33487251 gaatttgaagttaaatttgttattttatggtgtttcttagcattgagtaaagtgtgaaaagcaattttctt 33487181  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 5998462 - 5998521
Alignment:
Q  128 taaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttctt 187  Q
    ||||||||| |||||| | ||||||||||| |||| |||| |||||||||||||||||||    
T  5998462 taaacttgtcattttatgatgtttcttagctttgtttgaaatgggaaaaacaattttctt 5998521  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 42082891 - 42082747
Alignment:
Q  29 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatggatggaatttgaggtt 128  Q
    |||||| | ||||||||||| | || |||| |||||||||||| ||||||||||||||| |  | ||| ||| || ||    | |||| |||||||||||    
T  42082891 gaaaatcgttgttcccacatcatagattgctatgaaacaccacgaaattaccaatataatcccattggtagtaaactg----tcgatgaaatttgaggtt 42082796  T
Q  129 aaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaa 177  Q
    ||| |||| |||| | ||||||||||||||| |  ||||||| ||||||    
T  42082795 aaatttgtcatttcatggtgtttcttagcatcgaatgaagtgtgaaaaa 42082747  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 25244177 - 25244239
Alignment:
Q  28 tgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataacct 90  Q
    |||| |||| ||||||||||| ||||| ||||| ||||||||| |||| ||||||||||||||    
T  25244177 tgaagattgctgttcccacatcaaaggatgcaaggaaacaccagaaaaataccaatataacct 25244239  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 30458166 - 30458107
Alignment:
Q  127 ttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttct 186  Q
    |||||||||| |||| |  ||||||| |||| |||| |||||||||||||||||||||||    
T  30458166 ttaaacttgtcatttcatagtgtttcgtagctttgtttgaagtgggaaaaacaattttct 30458107  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 35582303 - 35582374
Alignment:
Q  117 gaatttgaggttaaa-cttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttctt 187  Q
    ||||||||||||||| ||| | |||| |  |||||||||||| | |||||||||||||||| ||||||||||    
T  35582303 gaatttgaggttaaaacttatcatttcatagtgtttcttagcttcgtgtgaagtgggaaaagcaattttctt 35582374  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 11674234 - 11674161
Alignment:
Q  113 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttct 186  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||| ||||||   |||| ||||||||||||||    
T  11674234 gatggaatttgaggttaaacttgttattttatggtatttcttagccttgtgtacggtggaaaaaacaattttct 11674161  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 40767267 - 40767210
Alignment:
Q  33 attgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataacct 90  Q
    |||||||||||||||| ||||| ||| ||||||||||| |||| ||||||||||||||    
T  40767267 attgatgttcccacatcaaagggtgctatgaaacaccagaaaaataccaatataacct 40767210  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 39043523 - 39043586
Alignment:
Q  27 ttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataacct 90  Q
    ||||||||| |||||||||||| ||| ||||| | ||||||||| ||||||||||| |||||||    
T  39043523 ttgaaaattaatgttcccacatcaaaagttgctaggaaacaccataaaattaccaaaataacct 39043586  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 38739180 - 38739239
Alignment:
Q  125 ggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaatttt 184  Q
    |||||||||| | |||||| ||| ||||||||| |||||||| ||| |||||||||||||    
T  38739180 ggttaaacttatcattttatggtatttcttagctttgtgtgaggtgagaaaaacaatttt 38739239  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 39043598 - 39043668
Alignment:
Q  117 gaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttctt 187  Q
    |||||||| |||||| ||||  ||| | ||||||||||||||||||||||||||  |||  ||||||||||    
T  39043598 gaatttgacgttaaatttgtcctttcatggtgtttcttagcattgtgtgaagtgtaaaaggcaattttctt 39043668  T

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Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 48632 - 48578
Alignment:
Q  125 ggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaaca 179  Q
    |||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||    
T  48632 ggttaaacttgttattttatggtgttccttagcattgtttgaagtgggaaaaaca 48578  T

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Target: scaffold0027; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 48687 - 48751
Alignment:
Q  117 gaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaat 181  Q
    |||||||||||||||||| | |||| |  || |||||||||| |||||||||| |||||| ||||    
T  48687 gaatttgaggttaaacttatcatttcatagtatttcttagcaatgtgtgaagttggaaaagcaat 48751  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 31661586 - 31661518
Alignment:
Q  117 gaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    ||||||||||||||| |||| |||| |  |||||||||| ||||| ||||| || ||||||||||||||    
T  31661586 gaatttgaggttaaaattgtcatttcatagtgtttcttatcattgagtgaaatgcgaaaaacaattttc 31661518  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 34646283 - 34646355
Alignment:
Q  113 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 185  Q
    ||||||||||| | ||||| |||| |||| | ||||||| ||||||||||||||||||  ||| |||||||||    
T  34646283 gatggaatttgggattaaatttgtcatttcatggtgtttattagcattgtgtgaagtgtaaaagacaattttc 34646355  T

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