View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5866_high_41 (Length: 376)

Name: NF5866_high_41
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5866_high_41
NF5866_high_41
[»] chr3 (8 HSPs)
chr3 (13-255)||(26099489-26099739)
chr3 (295-361)||(26099779-26099845)
chr3 (291-361)||(53435777-53435847)
chr3 (143-210)||(48370509-48370576)
chr3 (13-135)||(53426400-53426525)
chr3 (137-210)||(53434734-53434806)
chr3 (70-128)||(53434620-53434678)
chr3 (215-255)||(53435701-53435741)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 26099489 - 26099739
Alignment:
Q  13 aatataaacttgattatcattccctggttgagtagctaaagataattttaactctccaagaaggaagagagagtaaaatgttagtatcaagaaaattgga 112  Q
    ||||||||||||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26099489 aatataaacttgattttcattctttggttgagtagctaaagatgattttaactctccaagaaggaagagagagtaaaatgttagtatcaagaaaattgga 26099588  T
Q  113 tttcttttcatgtttagcattcttttgatgagtatgcttgttagctcccacgcccacacatttatataagaagccattggacgaattaaagtaaata--- 209  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||       
T  26099589 tttcttttcatgtttagcattctttagatgagtatgcttgttagctcccacgctcacaaatttatataagaagccattggacgaattaaagtaaataaat 26099688  T
Q  210 ------aaaagtattttagaagaagtaaacacaaagcgtatgaatatcaatg 255  Q
          |||||||||||||||||||||||||| |||||||||||||||||||    
T  26099689 taggataaaagtattttagaagaagtaaacac-aagcgtatgaatatcaatg 26099739  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 295 - 361
Target Start/End: Original strand, 26099779 - 26099845
Alignment:
Q  295 agctgcatgttgtcttgccataaatctaacccactagttttaggagtcttttagaaaataaagcaac 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26099779 agctgcatgttgtcttgccataaatctaacccactagttttaggagtcttttagaaaataaagcaac 26099845  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 53435777 - 53435847
Alignment:
Q  291 ctctagctgcatgttgtcttgccataaatctaacccactagttttaggagtcttttagaaaataaagcaac 361  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||| |||||||||    
T  53435777 ctctagctgcatgttgtcttgccataaatctaaaacactaattttaggagtcttttagaaactaaagcaac 53435847  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 48370576 - 48370509
Alignment:
Q  143 agtatgcttgttagctcccacgcccacacatttatataagaagccattggacgaattaaagtaaataa 210  Q
    ||||||||||||||||||| | | ||||||||||||||| |||||||||||| | |||||||||||||    
T  48370576 agtatgcttgttagctcccgccctcacacatttatataaaaagccattggactagttaaagtaaataa 48370509  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 53426400 - 53426525
Alignment:
Q  13 aatataaacttgattatcattccctggttgagtagctaaagataattttaactctccaag---aaggaagagagagtaaaatgttagtatcaagaaaatt 109  Q
    ||||||||||||||| |||||| ||| ||||| || ||| ||| || || ||||||||||   ||||||||| ||||||||| |||||| ||| | || |    
T  53426400 aatataaacttgattgtcattctctgattgaggagttaaggatgatcttgactctccaaggaaaaggaagagtgagtaaaatattagtaccaatagaact 53426499  T
Q  110 ggatttcttttcatgtttagcattct 135  Q
    | ||||| |||||||||||| |||||    
T  53426500 gaatttcctttcatgtttagtattct 53426525  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 53434734 - 53434806
Alignment:
Q  137 ttgatgagtatgcttgttagctcccacgcccacacatttatataagaagccattggacgaattaaagtaaataa 210  Q
    ||||||||||||||| ||||||||| | | ||||||||||||||||||||||  |||| | |||||||||||||    
T  53434734 ttgatgagtatgcttattagctccccctcgcacacatttatataagaagcca-cggactagttaaagtaaataa 53434806  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 53434620 - 53434678
Alignment:
Q  70 aagaaggaagagagagtaaaatgttagtatcaagaaaattggatttcttttcatgttta 128  Q
    |||||||||||| ||||||||   || |||||| ||||||||||||| |||||||||||    
T  53434620 aagaaggaagagtgagtaaaacactaatatcaataaaattggatttcctttcatgttta 53434678  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 53435701 - 53435741
Alignment:
Q  215 tattttagaagaagtaaacacaaagcgtatgaatatcaatg 255  Q
    |||| ||||||||| ||||||||| ||||||||||||||||    
T  53435701 tattatagaagaagaaaacacaaaccgtatgaatatcaatg 53435741  T

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