View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5866_high_42 (Length: 375)

Name: NF5866_high_42
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5866_high_42
NF5866_high_42
[»] chr4 (3 HSPs)
chr4 (19-215)||(37783750-37783946)
chr4 (215-365)||(37783971-37784121)
chr4 (115-168)||(55827307-55827360)
[»] chr7 (3 HSPs)
chr7 (125-203)||(5026141-5026220)
chr7 (114-155)||(14773460-14773501)
chr7 (114-155)||(15223912-15223953)
[»] chr3 (1 HSPs)
chr3 (115-161)||(46829115-46829161)
[»] chr5 (3 HSPs)
chr5 (115-164)||(34252787-34252836)
chr5 (115-161)||(34252708-34252754)
chr5 (117-161)||(9956571-9956615)
[»] chr2 (3 HSPs)
chr2 (112-204)||(24037572-24037665)
chr2 (115-164)||(10459336-10459385)
chr2 (115-168)||(29291130-29291183)
[»] chr1 (2 HSPs)
chr1 (113-150)||(27528362-27528399)
chr1 (115-181)||(31784788-31784854)
[»] chr6 (5 HSPs)
chr6 (113-181)||(9675751-9675819)
chr6 (112-207)||(33822276-33822372)
chr6 (113-215)||(30531196-30531299)
chr6 (115-181)||(31323867-31323933)
chr6 (130-205)||(31323820-31323896)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 37783750 - 37783946
Alignment:
Q  19 tatgcaaaattcttttttgagatgaagtgataatttactttgaatgtaaagaatattttgaaatcctctgacaaaaatgattttgccaaaaatatgtact 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37783750 tatgcaaaattcttttttgagatgaagtgataatttactttgaatttaaagaatattttgaaatcctatgacaaaaatgattttgccaaaaatatgtact 37783849  T
Q  119 cccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtaccaatttgtaccgcatacatcaacttatgttaactcgtttt 215  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||  ||||| |||| ||||||||||||||||||||||||||||    
T  37783850 cccttggtcctaaaatgtaaacaaaaattggttaacagaagttgatatatctagtataaatttataccacatacatcaacttatgttaactcgtttt 37783946  T

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Target: chr4; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 215 - 365
Target Start/End: Original strand, 37783971 - 37784121
Alignment:
Q  215 taagataaaaacaaatattaacatagatcagcaagctgagagcagaagcacatataaatttgtactagggtactattaatatgatagctacatctagtcc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37783971 taagataaaaacaaatattaacatagatcagcaagctgagagcagaagcacatataaatttgtactagggtactattaatatgatagctacatctagtcc 37784070  T
Q  315 cttctttacgtaagaaatttttcattattcataactcaatgccaccctatg 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37784071 cttctttacgtaagaaatttttcattattcataactcaatgccaccctatg 37784121  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 55827360 - 55827307
Alignment:
Q  115 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatat 168  Q
    |||||| ||||||| ||||| ||||||||||||||| |||| ||||| ||||||    
T  55827360 tactccattcgtcccaaaatataagcaaaaattggtcaacaaaagttaatatat 55827307  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 5026141 - 5026220
Alignment:
Q  125 gtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtac-caatttgtaccgcatacatcaacttatg 203  Q
    |||| ||||| |||||||||||||||||||| ||||| |||||| |||| |  ||||||||||  |||||||||||||||    
T  5026141 gtcccaaaatataagcaaaaattggttaacaaaagttaatatatttagtccaaaatttgtaccaaatacatcaacttatg 5026220  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 14773460 - 14773501
Alignment:
Q  114 gtactcccttcgtcctaaaatgtaagcaaaaattggttaaca 155  Q
    |||||| ||||||||||||||||||| |||||||||| ||||    
T  14773460 gtactctcttcgtcctaaaatgtaagtaaaaattggtgaaca 14773501  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 15223912 - 15223953
Alignment:
Q  114 gtactcccttcgtcctaaaatgtaagcaaaaattggttaaca 155  Q
    |||||| ||||||||||||||||||| |||||||||| ||||    
T  15223912 gtactctcttcgtcctaaaatgtaagtaaaaattggtgaaca 15223953  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 46829161 - 46829115
Alignment:
Q  115 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagtt 161  Q
    |||||||||||||||||||| ||||||||||||||| |||| |||||    
T  46829161 tactcccttcgtcctaaaatataagcaaaaattggtcaacaaaagtt 46829115  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 34252836 - 34252787
Alignment:
Q  115 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgat 164  Q
    |||||||| ||||| ||||||||||||||||| |||||||| ||||||||    
T  34252836 tactccctccgtcccaaaatgtaagcaaaaatgggttaacataagttgat 34252787  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 34252708 - 34252754
Alignment:
Q  115 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagtt 161  Q
    |||||||| ||||| ||||||||||||||||||||| |||| |||||    
T  34252708 tactccctccgtcccaaaatgtaagcaaaaattggtcaacaaaagtt 34252754  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 9956615 - 9956571
Alignment:
Q  117 ctcccttcgtcctaaaatgtaagcaaaaattggttaacagaagtt 161  Q
    |||||| ||||| |||||||||| ||||||||||||||| |||||    
T  9956615 ctccctccgtcccaaaatgtaagtaaaaattggttaacaaaagtt 9956571  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 24037572 - 24037665
Alignment:
Q  112 atgtactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtaccaattt-gtaccgcatacatcaacttatgt 204  Q
    ||||||||| | |||||||||||||||||||||||  || |||| |||||||||||| | |||| ||||| | ||   ||||||||||||||||    
T  24037572 atgtactccatccgtcctaaaatgtaagcaaaaatgagtcaacataagttgatatatttggtacaaattttgaacaaaatacatcaacttatgt 24037665  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 10459385 - 10459336
Alignment:
Q  115 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgat 164  Q
    |||||||| ||||| |||||||||||||| |||||| |||| ||||||||    
T  10459385 tactccctccgtcccaaaatgtaagcaaagattggtcaacataagttgat 10459336  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 29291183 - 29291130
Alignment:
Q  115 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatat 168  Q
    |||||||| ||||| ||||||||||||||||||||| || | ||||| ||||||    
T  29291183 tactccctccgtcccaaaatgtaagcaaaaattggtcaataaaagttaatatat 29291130  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 27528399 - 27528362
Alignment:
Q  113 tgtactcccttcgtcctaaaatgtaagcaaaaattggt 150  Q
    |||||||||||||||| |||||||||||||||||||||    
T  27528399 tgtactcccttcgtccgaaaatgtaagcaaaaattggt 27528362  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 31784854 - 31784788
Alignment:
Q  115 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtaccaattt 181  Q
    ||||||||  |||| |||||||||||||||||| || |||| |||||||| |||||| ||| |||||    
T  31784854 tactccctctgtcccaaaatgtaagcaaaaatttgtcaacataagttgatgtatctaatacaaattt 31784788  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 9675751 - 9675819
Alignment:
Q  113 tgtactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtaccaattt 181  Q
    |||||||||| ||||  ||||||||||||||||||||| |||| ||||||||  |||| |||| |||||    
T  9675751 tgtactccctccgtctcaaaatgtaagcaaaaattggtcaacataagttgatgcatctggtacaaattt 9675819  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 33822276 - 33822372
Alignment:
Q  112 atgtactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtac-caatttgtaccgcatacatcaacttatgttaa 207  Q
    ||||||||| | |||||||||||||||  |||||||| |||||| ||||| |||||| |||| |  |||||||| |  |||||||||||||| ||||    
T  33822276 atgtactccatccgtcctaaaatgtaaataaaaattgattaacaaaagttaatatatttagttcaaaatttgtatcaaatacatcaacttatattaa 33822372  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 30531299 - 30531196
Alignment:
Q  113 tgtactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtaccaa-tttgtaccgcatacatcaacttatgttaactcg 211  Q
    |||||||||| ||||| |||||||||||||||||   | |||| |||||||| ||| | |||| || |||| |||  ||||||||||||||||| || ||    
T  30531299 tgtactccctccgtcccaaaatgtaagcaaaaatgactcaacataagttgatgtatttggtacaaactttgaaccaaatacatcaacttatgttgacccg 30531200  T
Q  212 tttt 215  Q
    ||||    
T  30531199 tttt 30531196  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 31323933 - 31323867
Alignment:
Q  115 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtaccaattt 181  Q
    ||||||||  |||| ||||||||||||||||| ||| |||| |||||||| ||||| |||| |||||    
T  31323933 tactccctctgtcccaaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattt 31323867  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 31323820 - 31323896
Alignment:
Q  130 aaaatgtaagcaaaaattggttaacagaagttgatatatctagtac-caatttgtaccgcatacatcaacttatgtt 205  Q
    ||||||||||||||||||||| |||| ||||| || ||| | || |  ||||||||||  |||||||||||||||||    
T  31323820 aaaatgtaagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgtt 31323896  T

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