View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5866_high_46 (Length: 358)

Name: NF5866_high_46
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5866_high_46
NF5866_high_46
[»] chr2 (18 HSPs)
chr2 (1-347)||(4445639-4445985)
chr2 (223-305)||(944802-944884)
chr2 (231-320)||(38935368-38935457)
chr2 (232-306)||(43398844-43398918)
chr2 (232-293)||(24037590-24037651)
chr2 (217-319)||(35311176-35311277)
chr2 (231-320)||(10459282-10459371)
chr2 (231-288)||(16564424-16564481)
chr2 (222-306)||(16180431-16180515)
chr2 (224-286)||(41099028-41099090)
chr2 (214-287)||(4224965-4225038)
chr2 (243-320)||(7932759-7932836)
chr2 (243-319)||(43465466-43465542)
chr2 (231-298)||(2949080-2949147)
chr2 (214-320)||(11386325-11386431)
chr2 (226-319)||(41374529-41374622)
chr2 (231-288)||(43042214-43042271)
chr2 (232-284)||(36597137-36597189)
[»] chr6 (9 HSPs)
chr6 (231-320)||(31323830-31323919)
chr6 (229-306)||(31522611-31522688)
chr6 (247-319)||(9829908-9829980)
chr6 (223-285)||(9675759-9675821)
chr6 (231-293)||(30531221-30531283)
chr6 (238-319)||(2282415-2282496)
chr6 (216-293)||(14222836-14222913)
chr6 (214-306)||(14446726-14446818)
chr6 (230-319)||(33822305-33822394)
[»] chr4 (9 HSPs)
chr4 (227-320)||(54235223-54235316)
chr4 (232-298)||(5496857-5496923)
chr4 (231-287)||(4423198-4423254)
chr4 (231-310)||(12276846-12276925)
chr4 (16-145)||(34639062-34639191)
chr4 (231-320)||(30848595-30848686)
chr4 (231-305)||(18995138-18995210)
chr4 (232-305)||(5024679-5024752)
chr4 (223-320)||(24980622-24980719)
[»] chr3 (8 HSPs)
chr3 (231-320)||(32221475-32221564)
chr3 (223-305)||(47783109-47783191)
chr3 (223-298)||(18364206-18364280)
chr3 (232-298)||(26104256-26104322)
chr3 (232-293)||(29637439-29637500)
chr3 (231-319)||(31280172-31280260)
chr3 (232-288)||(37330975-37331031)
chr3 (223-320)||(32221486-32221583)
[»] scaffold0097 (1 HSPs)
scaffold0097 (232-319)||(37928-38015)
[»] chr7 (5 HSPs)
chr7 (231-306)||(44816497-44816572)
chr7 (216-298)||(32652396-32652478)
chr7 (232-293)||(23971191-23971252)
chr7 (231-305)||(18731995-18732069)
chr7 (223-293)||(1554833-1554902)
[»] chr5 (11 HSPs)
chr5 (220-293)||(968276-968349)
chr5 (232-298)||(9530951-9531017)
chr5 (232-287)||(14646368-14646423)
chr5 (230-284)||(5727767-5727821)
chr5 (231-305)||(33669932-33670006)
chr5 (231-320)||(39030579-39030668)
chr5 (228-311)||(30293401-30293484)
chr5 (232-305)||(2424444-2424517)
chr5 (220-305)||(25467100-25467185)
chr5 (231-320)||(34252733-34252822)
chr5 (251-319)||(42324905-42324973)
[»] scaffold0067 (1 HSPs)
scaffold0067 (231-319)||(35957-36045)
[»] chr8 (4 HSPs)
chr8 (224-288)||(29797938-29798002)
chr8 (251-320)||(13209980-13210049)
chr8 (232-320)||(29110965-29111053)
chr8 (232-287)||(37627916-37627971)
[»] chr1 (7 HSPs)
chr1 (209-293)||(26265762-26265846)
chr1 (224-319)||(30693352-30693447)
chr1 (231-298)||(31784773-31784840)
chr1 (233-298)||(5693581-5693646)
chr1 (231-306)||(37918919-37918994)
chr1 (231-287)||(3693992-3694048)
chr1 (254-298)||(27527733-27527777)
[»] scaffold0027 (1 HSPs)
scaffold0027 (232-320)||(13190-13278)
[»] scaffold0034 (1 HSPs)
scaffold0034 (232-298)||(94984-95050)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 4445639 - 4445985
Alignment:
Q  1 ttgaagatattaatagtggctgttgtggaagtggatacattgaagcatcagttttgtgcaataaggtttcaaatgtgtgccctgacccatctaagtatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4445639 ttgaagatattaatagtggctgttgtggaagtggatacattgaagcatcagttttgtgcaataaggtttcaaatgtgtgccctgacccatctaagtatat 4445738  T
Q  101 gttttgggattcaattcatcctacagagaaggcataccacaacctcttcttggctttccaacccaccattgatttcattgtcaacaactagaataatgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4445739 gttttgggattcaattcatcctacagagaaggcataccacaacctcttcttggctttccaacccaccattgatttcattgtcaacaactagaataatgaa 4445838  T
Q  201 tgagttccttcatatatattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattga 300  Q
    |||||||||||||||||| ||| ||| |  |||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  4445839 tgagttccttcatatatactctttccatcccaaaatataagcaaaaataagttaatataaattgatgtatttggtacaaattttgaacaaaatgtattga 4445938  T
Q  301 cttttgctgattaatttttggacggagggaatacatatttgatctct 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4445939 cttttgctgattaatttttggacggagggaatacatatttgatctct 4445985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 944884 - 944802
Alignment:
Q  223 ctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 305  Q
    |||||| |||||||||||| |||||| |||||| |||| ||||||||| ||||||||||||||||| |||| |||| ||||||    
T  944884 ctccgtctcaaaatgtaagtaaaaattagtcaacataagttgatgtatttggtacaaattttgaactaaatacattaactttt 944802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 38935368 - 38935457
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 320  Q
    |||||| ||||||||||| |||||| |||| ||||||||| || |||| |||||||||||||| |||| ||||||| ||| |||||||||    
T  38935368 caaaatataagcaaaaatgagtcaacataagttgatgtatttgatacagattttgaacaaaatacattaacttttgttgagtaatttttg 38935457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 43398844 - 43398918
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttg 306  Q
    |||||||||| ||||||  |||||||||| ||||||||| ||||||||||||||||| |||| |||| |||||||    
T  43398844 aaaatgtaagtaaaaatgggtcaatataagttgatgtatttggtacaaattttgaaccaaatacattaacttttg 43398918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 24037590 - 24037651
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 293  Q
    ||||||||||||||||| |||||| |||| ||||| ||| ||||||||||||||||||||||    
T  24037590 aaaatgtaagcaaaaatgagtcaacataagttgatatatttggtacaaattttgaacaaaat 24037651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 319
Target Start/End: Original strand, 35311176 - 35311277
Alignment:
Q  217 tattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatt 316  Q
    ||||| || |||||||||||||||||||||||  ||||| |||| || || ||||| ||||||||||||||| |||| |||| ||||||| ||| ||| |    
T  35311176 tattcccttcgtttcaaaatgtaagcaaaaatgggtcaacataagtt-atatatcttgtacaaattttgaaccaaatacattaacttttgttgactaaat 35311274  T
Q  317 ttt 319  Q
    |||    
T  35311275 ttt 35311277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 10459371 - 10459282
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 320  Q
    ||||||||||||||| ||  ||||| |||| |||||| ||||| |||||||||||||| |||| |||| ||||||| |||  ||||||||    
T  10459371 caaaatgtaagcaaagattggtcaacataagttgatgcatctgatacaaattttgaaccaaatacattaacttttgttgaccaatttttg 10459282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 16564481 - 16564424
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaac 288  Q
    ||||||||||| |||||| |||||| |||| ||||||||| |||||||||||||||||    
T  16564481 caaaatgtaagtaaaaatgagtcaacataagttgatgtatttggtacaaattttgaac 16564424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 16180431 - 16180515
Alignment:
Q  222 tctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttg 306  Q
    |||||||  |||||||||||||||||| |||||| ||||||||||||||    || ||||||||||| |||| |||| |||||||    
T  16180431 tctccgtcccaaaatgtaagcaaaaattagtcaacataaattgatgtattaaatataaattttgaaccaaatacattaacttttg 16180515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 41099090 - 41099028
Alignment:
Q  224 tccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttga 286  Q
    |||||| ||||||||||||||||||  ||||| |||| || |||||| |||||||||||||||    
T  41099090 tccgttccaaaatgtaagcaaaaatgggtcaacataagttaatgtatttggtacaaattttga 41099028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 4224965 - 4225038
Alignment:
Q  214 atatattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaa 287  Q
    ||||||||| ||||||  ||||| |||| |||| |  ||||| |||||||||||||||||||| ||||||||||    
T  4224965 atatattctttccgttctaaaatataagtaaaagttggtcaacataaattgatgtatctggtataaattttgaa 4225038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 7932836 - 7932759
Alignment:
Q  243 aaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 320  Q
    |||||| |||||| |||| |||||||||||| || ||||||||||| |||| | || ||||||| ||| |||||||||    
T  7932836 aaaaatgagtcaacataagttgatgtatctgatataaattttgaaccaaatacgttaacttttgttgactaatttttg 7932759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 43465466 - 43465542
Alignment:
Q  243 aaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 319  Q
    ||||||| ||||||| | |||||||||||||  | |||||||||||||||| |||| ||||||| | | ||||||||    
T  43465466 aaaaataggtcaataaatattgatgtatctgacataaattttgaacaaaatacattaacttttgttaactaattttt 43465542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 2949147 - 2949080
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 298  Q
    ||||||||||| ||||||| ||||| |||||||||||||| ||  |  ||||||||||||||| ||||    
T  2949147 caaaatgtaagtaaaaataggtcaacataaattgatgtatatgacattaattttgaacaaaatacatt 2949080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 320
Target Start/End: Complemental strand, 11386431 - 11386325
Alignment:
Q  214 atatattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgatta 313  Q
    ||||| ||||| ||||||||||| ||||||||| |   |||| |||| ||||||||| || |||||||||||||  ||||  ||| | ||||| |||| |    
T  11386431 atatactctcttcgtttcaaaatataagcaaaatttgatcaacataagttgatgtatttgatacaaattttgaattaaatatattaatttttgttgatca 11386332  T
Q  314 atttttg 320  Q
    |||||||    
T  11386331 atttttg 11386325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 319
Target Start/End: Original strand, 41374529 - 41374622
Alignment:
Q  226 cgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 319  Q
    |||| |||||||||||||||||| ||| || | || ||||||||| ||||| ||| ||||||  |||| |||| ||||| | ||| ||||||||    
T  41374529 cgttccaaaatgtaagcaaaaatgagtgaacacaagttgatgtatttggtataaactttgaatcaaatacattaactttcgttgactaattttt 41374622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 43042271 - 43042214
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaac 288  Q
    |||||||||||||||||| ||| || | || |||||||||||| || |||||||||||    
T  43042271 caaaatgtaagcaaaaatgagtaaacaaaagttgatgtatctgatataaattttgaac 43042214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 36597189 - 36597137
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaatttt 284  Q
    ||||| ||||| ||||||  |||||||| ||||||||||||| ||||||||||    
T  36597189 aaaatataagccaaaatagatcaatatatattgatgtatctgttacaaatttt 36597137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 31323919 - 31323830
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 320  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| |||| ||||||| |||  ||||||||    
T  31323919 caaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgaccaatttttg 31323830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 31522611 - 31522688
Alignment:
Q  229 ttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttg 306  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||  ||||||||| |||||||    
T  31522611 ttcaaaatgtaagcaaaaataagttaatataaaacgatgtatctggtacaaattttgaatcaaatgcattaacttttg 31522688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 319
Target Start/End: Complemental strand, 9829980 - 9829908
Alignment:
Q  247 ataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 319  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||| |||| | ||||| ||| ||||||||    
T  9829980 ataagtcaacataaattgatgtatttggtacaaattttaaacaaaatacattaatttttgttgactaattttt 9829908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 9675759 - 9675821
Alignment:
Q  223 ctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttg 285  Q
    |||||| |||||||||||||||||||  ||||| |||| |||||| |||||||||||||||||    
T  9675759 ctccgtctcaaaatgtaagcaaaaattggtcaacataagttgatgcatctggtacaaattttg 9675821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 30531283 - 30531221
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 293  Q
    |||||||||||||||||| | |||| |||| ||||||||| ||||||||| ||||||| ||||    
T  30531283 caaaatgtaagcaaaaatgactcaacataagttgatgtatttggtacaaactttgaaccaaat 30531221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 319
Target Start/End: Complemental strand, 2282496 - 2282415
Alignment:
Q  238 taagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 319  Q
    ||||||||||| ||| || |||||||||||||| || ||||| |||||||| |||| |||| ||||||| |||  |||||||    
T  2282496 taagcaaaaattagttaacataaattgatgtatttgatacaatttttgaactaaatacattaacttttgttgaccaattttt 2282415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 293
Target Start/End: Complemental strand, 14222913 - 14222836
Alignment:
Q  216 atattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 293  Q
    ||||| |||| ||| ||||||||||||||||||  ||||| |||| ||||||||| ||||  |||||||||| |||||    
T  14222913 atattgtctctgttccaaaatgtaagcaaaaatgggtcaacataagttgatgtatatggtgtaaattttgaataaaat 14222836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 14446818 - 14446726
Alignment:
Q  214 atatattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttg 306  Q
    ||||| || ||||||  ||||||||||| ||||||  |||||| ||| |||||||||||  || ||||||||||||| || |||| |||||||    
T  14446818 atatactccctccgtcccaaaatgtaagtaaaaattggtcaatgtaagttgatgtatctaatataaattttgaacaacatacattaacttttg 14446726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 319
Target Start/End: Complemental strand, 33822394 - 33822305
Alignment:
Q  230 tcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 319  Q
    |||||||||||| ||||||   | ||||||| ||||||||| || |||||||||||||| ||||  ||| ||||||| | || |||||||    
T  33822394 tcaaaatgtaagtaaaaatggattaatataagttgatgtatttgatacaaattttgaactaaatatattaacttttgttaatcaattttt 33822305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 320
Target Start/End: Original strand, 54235223 - 54235316
Alignment:
Q  227 gtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 320  Q
    |||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||| |||| ||||||| |||  ||||||||    
T  54235223 gtttcaaaatgtaagcaaaaatgagtcaatataaattgatgtatttagtacaaattttgaaccaaatacattaacttttgttgagcaatttttg 54235316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 298
Target Start/End: Original strand, 5496857 - 5496923
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 298  Q
    ||||||||| ||||||| ||||||||||| ||||| ||| ||||||||||||||||| |||| ||||    
T  5496857 aaaatgtaaacaaaaatgagtcaatataagttgatttatttggtacaaattttgaaccaaatacatt 5496923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 4423254 - 4423198
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaa 287  Q
    ||||||||||||||||||   ||||||||| ||||||||| ||||||||||||||||    
T  4423254 caaaatgtaagcaaaaatggatcaatataagttgatgtatttggtacaaattttgaa 4423198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 12276925 - 12276846
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctga 310  Q
    |||||| |||||||||||| ||||| |||| ||||||||| | ||| ||||||||||  |||| |||| |||||||||||    
T  12276925 caaaatataagcaaaaataggtcaacataagttgatgtatttagtataaattttgaatcaaatacattaacttttgctga 12276846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 34639191 - 34639062
Alignment:
Q  16 gtggctgttgtggaagtggatacattgaagcatcagttttgtgcaataaggtttcaaatgtgtgccctgacccatctaagtatatgttttgggattcaat 115  Q
    ||||||||||||||||||| | |||||||||| || || |||| |||    ||||| |||| ||  |||| ||||| || ||| | ||||||||||||||    
T  34639191 gtggctgttgtggaagtggtttcattgaagcaacatttatgtgtaatcgtatttcacatgtatgttctgatccatcaaaatatgtcttttgggattcaat 34639092  T
Q  116 tcatcctacagagaaggcataccacaacct 145  Q
     ||||| || ||||||||||| || |||||    
T  34639091 acatccgactgagaaggcatatcataacct 34639062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 30848595 - 30848686
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctg--gtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 320  Q
    ||||||||||||||||||   |||| |||| |||||||||||   |||||||||||||||||||| |||| | ||||| |||  ||||||||    
T  30848595 caaaatgtaagcaaaaatggatcaacataagttgatgtatctaatgtacaaattttgaacaaaatacattaatttttgttgaccaatttttg 30848686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 18995138 - 18995210
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 305  Q
    |||||| ||||||||||  |||||| |||| |||||||||||| |||||||||||||| |||| |||| ||||||    
T  18995138 caaaatataagcaaaaagtagtcaa-ataagttgatgtatctg-tacaaattttgaaccaaatacattaactttt 18995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 5024752 - 5024679
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 305  Q
    |||||||||  |||||| ||||||||||||||| ||||| || || ||||||||||  |||| |||| ||||||    
T  5024752 aaaatgtaattaaaaatgagtcaatataaattgttgtatttgatataaattttgaaataaatacattaactttt 5024679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 24980622 - 24980719
Alignment:
Q  223 ctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 320  Q
    |||||||  |||||||||| ||||||   |||| |||| ||||||||||||  |||||||||| ||||||| |||| | ||||| |||  ||||||||    
T  24980622 ctccgttctaaaatgtaagtaaaaatggatcaacataagttgatgtatctgacacaaattttgtacaaaatacattaatttttgttgacaaatttttg 24980719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 32221475 - 32221564
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 320  Q
    ||||||||||||||||||   |||  |||||||||||||| ||||||||||||||||| |||| |||| ||||||| ||| |||||||||    
T  32221475 caaaatgtaagcaaaaattgatcagcataaattgatgtatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttg 32221564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 47783191 - 47783109
Alignment:
Q  223 ctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 305  Q
    ||||||| |||||| ||||||||||| |||||| ||||   |||||||||| |||||||||||||| |||| |||| ||||||    
T  47783191 ctccgttccaaaatataagcaaaaatgagtcaacataagccgatgtatctgatacaaattttgaaccaaatacattaactttt 47783109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 18364280 - 18364206
Alignment:
Q  223 ctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 298  Q
    ||||||| ||||||||||||||||||  || || |||| ||||||||||||  |||||||||||||||||| ||||    
T  18364280 ctccgttccaaaatgtaagcaaaaatg-gttaacataagttgatgtatctgacacaaattttgaacaaaatacatt 18364206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 26104322 - 26104256
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 298  Q
    ||||||||||||||||| |||||| |||||||||| | | || |||||||||||||| |||| ||||    
T  26104322 aaaatgtaagcaaaaatgagtcaacataaattgatttgtttgatacaaattttgaactaaatacatt 26104256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 29637439 - 29637500
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 293  Q
    |||||||||| ||||||||||||| ||||||| || ||| || |||||||||||||| ||||    
T  29637439 aaaatgtaagaaaaaataagtcaacataaattaatatatttgatacaaattttgaaccaaat 29637500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 319
Target Start/End: Complemental strand, 31280260 - 31280172
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 319  Q
    ||||| ||||| ||||||   |||| ||||||| |||||| ||||||||||||||||| |||| |||| | ||||| |||| |||||||    
T  31280260 caaaaggtaaggaaaaatggatcaacataaattaatgtatatggtacaaattttgaaccaaatacattaaattttgttgatcaattttt 31280172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 37331031 - 37330975
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaac 288  Q
    |||||||||||||||||  || || ||||||||| |||||| |||||||||||||||    
T  37331031 aaaatgtaagcaaaaatgggttaacataaattgacgtatctagtacaaattttgaac 37330975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 320
Target Start/End: Complemental strand, 32221583 - 32221486
Alignment:
Q  223 ctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 320  Q
    |||||| ||||||||||||||||||| |||||| | || || |||||| |||| |||| |||| || |||| |||  | || ||||||| ||||||||    
T  32221583 ctccgtatcaaaatgtaagcaaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttg 32221486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 38015 - 37928
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 319  Q
    ||||||||| ||||||  ||||||||||||||||||||| ||||| ||||||| ||| |||| |||| ||||||| ||| ||||||||    
T  38015 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttaaaccaaatacattaacttttgttgactaattttt 37928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 44816572 - 44816497
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttg 306  Q
    |||||||||||||||||| | | |||||||| |||||||| ||||||||||||||||| |||| |||| |||||||    
T  44816572 caaaatgtaagcaaaaatgaattaatataaactgatgtatttggtacaaattttgaaccaaatacattaacttttg 44816497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 298
Target Start/End: Original strand, 32652396 - 32652478
Alignment:
Q  216 atattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 298  Q
    ||||| ||| ||| |||||||||||| ||||||||||||| |||||||| ||||| ||||||||| ||||||| |||| ||||    
T  32652396 atattttctgcgtctcaaaatgtaagtaaaaataagtcaacataaattggtgtatttggtacaaactttgaaccaaatacatt 32652478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 23971191 - 23971252
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 293  Q
    ||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||    
T  23971191 aaaatataagcaaaaataaatcaatataagttgatgtatttggtacaaattttgaactaaat 23971252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 18731995 - 18732069
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 305  Q
    |||||| |||||||||||   |||| |||||||||||||||||||| ||||||||||| |||| |||| ||||||    
T  18731995 caaaatataagcaaaaatggatcaacataaattgatgtatctggtataaattttgaaccaaatacattaactttt 18732069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 1554833 - 1554902
Alignment:
Q  223 ctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 293  Q
    |||||| ||||||||||||||||||||| |||||||   ||||| ||||| ||||||||||| ||||||||    
T  1554833 ctccgtctcaaaatgtaagcaaaaataaatcaatat-ttttgatatatctagtacaaattttaaacaaaat 1554902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 220 - 293
Target Start/End: Original strand, 968276 - 968349
Alignment:
Q  220 tctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 293  Q
    |||||||||||||||||||||| |||| |  |||||| ||| ||||||||| ||||||||||||||||| ||||    
T  968276 tctctccgtttcaaaatgtaagtaaaagtgggtcaatttaagttgatgtatttggtacaaattttgaactaaat 968349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 9531017 - 9530951
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 298  Q
    ||||||||||||||||| ||||||||||||||| ||||| || || ||||||||||| |||| ||||    
T  9531017 aaaatgtaagcaaaaatgagtcaatataaattggtgtatttgatataaattttgaaccaaatacatt 9530951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 14646368 - 14646423
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaa 287  Q
    ||||| |||| ||||||||||||||||||||| |||||| | ||||||||||||||    
T  14646368 aaaatataagtaaaaataagtcaatataaattaatgtatttagtacaaattttgaa 14646423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 5727821 - 5727767
Alignment:
Q  230 tcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaatttt 284  Q
    |||||||||||| ||||||| ||||  |||| |||||||||||||||||||||||    
T  5727821 tcaaaatgtaagtaaaaataggtcacaataagttgatgtatctggtacaaatttt 5727767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 33669932 - 33670006
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 305  Q
    ||||||||||||||||||  ||||| |||| ||  ||||||||||||||||||| ||| |||| |||| ||||||    
T  33669932 caaaatgtaagcaaaaatgggtcaacataagttagtgtatctggtacaaattttaaaccaaatacattaactttt 33670006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 39030668 - 39030579
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 320  Q
    |||||| ||||||||||| |||||| | || || |||||| ||||||||||||| ||| |||| |||| ||||||| |||  ||||||||    
T  39030668 caaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttg 39030579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 30293484 - 30293401
Alignment:
Q  228 tttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgat 311  Q
    ||||||||| |||| |||||| |||||| |||  ||||||||| || || ||||||||||  |||| |||||||||||| ||||    
T  30293484 tttcaaaatataagtaaaaatgagtcaacatatgttgatgtatttgatataaattttgaatcaaatacattgacttttgttgat 30293401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 2424444 - 2424517
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 305  Q
    ||||| |||||||||||  || || ||||  |||||||| ||||||||||||||||| |||| |||| ||||||    
T  2424444 aaaatataagcaaaaatttgttaacataagctgatgtatatggtacaaattttgaaccaaatacattaactttt 2424517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 25467100 - 25467185
Alignment:
Q  220 tctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 305  Q
    ||||||||| |||||||||||||||||||   | || |||| |||||||||| | || ||||||||||| | || |||| ||||||    
T  25467100 tctctccgtctcaaaatgtaagcaaaaatggattaacataagttgatgtatccgatataaattttgaaccacatacattaactttt 25467185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 34252822 - 34252733
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 320  Q
    ||||||||||||||||||  || || |||| |||||| || ||| | ||||||||||| |||| |||| ||||||| |||  ||||||||    
T  34252822 caaaatgtaagcaaaaatgggttaacataagttgatgaatgtggcataaattttgaaccaaatacattaacttttgttgaccaatttttg 34252733  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 42324905 - 42324973
Alignment:
Q  251 gtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 319  Q
    |||||||||||||||||||| ||||| ||||||| ||  |||| |||| ||||||| |||  |||||||    
T  42324905 gtcaatataaattgatgtatttggtataaattttaaaacaaatacattaacttttgttgaccaattttt 42324973  T

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Target: scaffold0067 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 319
Target Start/End: Complemental strand, 36045 - 35957
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 319  Q
    |||||||||| ||||||| ||||||||||||||||||||| || ||||||||||| || |||| |||| ||  ||| |||| |||||||    
T  36045 caaaatgtaaacaaaaatgagtcaatataaattgatgtatttgatacaaattttgtaccaaatacattaacggttgttgatcaattttt 35957  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 29797938 - 29798002
Alignment:
Q  224 tccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaac 288  Q
    |||||| |||||||||||||||||| ||| || ||||||| |||||| |||||||||||||||||    
T  29797938 tccgttccaaaatgtaagcaaaaatgagttaacataaatttatgtatttggtacaaattttgaac 29798002  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 13210049 - 13209980
Alignment:
Q  251 gtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 320  Q
    ||||| |||| |||||||||||| |||||||||||||| |||| |||| ||||||| |||| ||||||||    
T  13210049 gtcaacataagttgatgtatctgatacaaattttgaaccaaatacattaacttttgttgatcaatttttg 13209980  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 320
Target Start/End: Original strand, 29110965 - 29111053
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 320  Q
    ||||||||||||| |||| ||||||||||||  |||||| ||||| ||||||||||| |||| |||| | ||| | |||| ||||||||    
T  29110965 aaaatgtaagcaataataggtcaatataaatgaatgtatttggtataaattttgaaccaaatacattaagtttcgttgatcaatttttg 29111053  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 37627916 - 37627971
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaa 287  Q
    |||||||||| |||||||||| ||||||| ||||||||| || |||||||||||||    
T  37627916 aaaatgtaagtaaaaataagttaatataagttgatgtatttgatacaaattttgaa 37627971  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 293
Target Start/End: Original strand, 26265762 - 26265846
Alignment:
Q  209 ttcatatatattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 293  Q
    |||||||||||| ||||| || ||||||||||||||||||| || || |||| ||||||||| | ||| ||||||||||| ||||    
T  26265762 ttcatatatattttctccattccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaat 26265846  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 319
Target Start/End: Complemental strand, 30693447 - 30693352
Alignment:
Q  224 tccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 319  Q
    |||||||||||||||||| |||||| | |||| ||||  |||||||| ||||||||||||||||  |||| |||| | ||||| |||| |||||||    
T  30693447 tccgtttcaaaatgtaagtaaaaatgaatcaacataatatgatgtatttggtacaaattttgaatcaaatacattaatttttgttgatcaattttt 30693352  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 31784840 - 31784773
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 298  Q
    ||||||||||||||||||  ||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  31784840 caaaatgtaagcaaaaatttgtcaacataagttgatgtatctaatacaaattttgaacaaaatacatt 31784773  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 5693581 - 5693646
Alignment:
Q  233 aaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 298  Q
    |||||||||||||||||  |||| |||||||||||| | | ||||||||||| ||| |||||||||    
T  5693581 aaatgtaagcaaaaatatatcaacataaattgatgtttttagtacaaattttaaaccaaatgcatt 5693646  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 37918919 - 37918994
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttg 306  Q
    |||||||||||||||||| | |||| |||| ||||||||| || || ||||||| ||| |||| |||| |||||||    
T  37918919 caaaatgtaagcaaaaatgaatcaacataagttgatgtatttgatataaattttaaaccaaatacattcacttttg 37918994  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 3693992 - 3694048
Alignment:
Q  231 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaa 287  Q
    ||||||||||| | |||| |||||| |||||||||||||| |  |||||||||||||    
T  3693992 caaaatgtaagtagaaatgagtcaacataaattgatgtatttaatacaaattttgaa 3694048  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 27527733 - 27527777
Alignment:
Q  254 aatataaattgatgtatctggtacaaattttgaacaaaatgcatt 298  Q
    ||||||| ||||||||||||||| ||||||||||| |||| ||||    
T  27527733 aatataagttgatgtatctggtataaattttgaaccaaatacatt 27527777  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 13278 - 13190
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 320  Q
    |||||||||| |||||  ||| ||||||| ||||||||||| ||||||||||| ||| |||| |||| ||||||| ||||  |||||||    
T  13278 aaaatgtaagtaaaaacgagttaatataagttgatgtatcttgtacaaattttaaaccaaatacattaacttttgttgatccatttttg 13190  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 95050 - 94984
Alignment:
Q  232 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 298  Q
    |||||||||  ||||||  ||||| |||| ||||||||| |||||||||||||||||| ||| ||||    
T  95050 aaaatgtaataaaaaattggtcaacataagttgatgtatttggtacaaattttgaacataatacatt 94984  T

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