View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5866_high_50 (Length: 353)

Name: NF5866_high_50
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5866_high_50
NF5866_high_50
[»] chr3 (5 HSPs)
chr3 (11-333)||(29074251-29074573)
chr3 (11-285)||(48099599-48099872)
chr3 (194-285)||(20620278-20620369)
chr3 (139-267)||(34013554-34013682)
chr3 (186-267)||(4185971-4186052)
[»] scaffold0655 (1 HSPs)
scaffold0655 (11-318)||(5851-6157)
[»] scaffold0134 (1 HSPs)
scaffold0134 (11-328)||(40568-40884)
[»] chr2 (3 HSPs)
chr2 (11-251)||(1586399-1586638)
chr2 (11-167)||(40620867-40621022)
chr2 (247-296)||(1587939-1587988)
[»] chr8 (4 HSPs)
chr8 (19-296)||(40270581-40270857)
chr8 (98-288)||(31342863-31343053)
chr8 (100-285)||(23583824-23584009)
chr8 (139-265)||(38614416-38614542)
[»] chr1 (8 HSPs)
chr1 (11-279)||(24209813-24210080)
chr1 (11-279)||(45029590-45029857)
chr1 (16-279)||(45034441-45034703)
chr1 (11-285)||(9932317-9932590)
chr1 (178-285)||(44387175-44387282)
chr1 (11-265)||(19329838-19330090)
chr1 (100-264)||(7324530-7324694)
chr1 (11-51)||(44387408-44387448)
[»] scaffold0009 (1 HSPs)
scaffold0009 (19-296)||(31682-31958)
[»] chr6 (2 HSPs)
chr6 (19-318)||(16594427-16594725)
chr6 (11-279)||(33165829-33166096)
[»] chr5 (1 HSPs)
chr5 (19-276)||(1546095-1546351)
[»] chr4 (1 HSPs)
chr4 (186-263)||(19337035-19337112)
[»] chr7 (1 HSPs)
chr7 (203-267)||(7084598-7084662)


Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 11 - 333
Target Start/End: Original strand, 29074251 - 29074573
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29074251 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaatagggaaataaagttctagtaaaaatattatgaatccaacatgact 29074350  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29074351 caaatacaacattaacaacatctctattttcggcttcaacactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 29074450  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtaggagataagctttgtgatggagaatagtgataaa 310  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  29074451 aaaaacacagtacccagatgtggaacgtctggtgtcaggacattcaccccaatcagcgtcagtgtaggagataagctttgtgatggggaatagtgataaa 29074550  T
Q  311 tgtaatccgtagtgtatgatact 333  Q
    |||||||||||||||||||||||    
T  29074551 tgtaatccgtagtgtatgatact 29074573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 48099599 - 48099872
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    |||| ||||| ||| |||||||||| |||||||||||||||||  | ||||  | |||||||| |||||| |  | ||   ||| ||| |||||| || |    
T  48099599 cagaaaggtaaatggcactaacattatcacaatacaccaaagtagcttgagagagtgggaaatgaagttccaagagaagg-ttacgaagccaacaagatt 48099697  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    ||||||| |||||| ||||| | || |  || ||||| |||||||| || || || ||||| ||    |||||| |||| ||||||||||||||||||||    
T  48099698 cagataccacattagcaacacccctgtactcagcttctgcactagagcgcgaaagtgtgggttgtcgcttggaagaccaggagatgaggttgtcaccaag 48099797  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtaggagataag 285  Q
    ||| ||||| || ||||| |||||||| | |||||| |||||| ||||||||||||| ||| | |||||||||||    
T  48099798 aaacacacaatagccagaggtagaacgacgggtgtctggacatccaccccaatcagcatcagtataggagataag 48099872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 285
Target Start/End: Complemental strand, 20620369 - 20620278
Alignment:
Q  194 atgaggttgtcaccaagaaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtaggagataag 285  Q
    |||||||||||||||||||| ||||| || ||||| || ||||  |  |||||||||||| ||||||||||||| ||| |||||||||||||    
T  20620369 atgaggttgtcaccaagaaacacacaatagccagaggtcgaacaacgagtgtcaggacatccaccccaatcagcatcagtgtaggagataag 20620278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 267
Target Start/End: Complemental strand, 34013682 - 34013554
Alignment:
Q  139 ttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaagaaaaacacagtatccagatgtagaacgt 238  Q
    ||||||||| |||||||| || || |  |||||||||  ||| ||  ||||||| || ||||| || |||||||| |||||||||||||| ||||| |||    
T  34013682 ttcggcttcggcactagatcgggataaggtgggctgccgtttagatgaccaagatatcaggttatctccaagaaagacacagtatccagaagtagaccgt 34013583  T
Q  239 ctggtgtcaggacattcaccccaatcagc 267  Q
    |||||||| || ||  |||| ||||||||    
T  34013582 ctggtgtcggggcacccacctcaatcagc 34013554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 4185971 - 4186052
Alignment:
Q  186 accaagagatgaggttgtcaccaagaaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagc 267  Q
    ||||||| || ||||| || |||||||| | |||||| ||||| ||||||||||||||||| || ||  |||||||||||||    
T  4185971 accaagatatcaggttatctccaagaaagatacagtagccagaagtagaacgtctggtgtcggggcacccaccccaatcagc 4186052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 5851 - 6157
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||| | |||||||| ||||||| |||||| |||||||   |||  ||||||||||||||    
T  5851 cagagagatagatgacactaacattgtcacaatacaccaaagtggcttgaggaatagggaaatgaagttccagtaaaagg-ttacaaatccaacatgact 5949  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    |||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||    
T  5950 cagatacaacattagcaacacctctatattcggcttcaacactagaccgagagagagtgggctgccttttggaagaccaagagataaggttgtcaccaag 6049  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtaggagataagctttgtgatggagaatagtgataaa 310  Q
    ||||||||| || | || ||| ||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||| ||||||||||| | || ||||||||    
T  6050 aaaaacacaataccgagctgtggaatgtctggtgtcaagacatccaccccaatcaacgtcagtgtaggagataatctttgtgatgggggatggtgataaa 6149  T
Q  311 tgtaatcc 318  Q
    ||||||||    
T  6150 tgtaatcc 6157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 40884 - 40568
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    ||||||| || ||| ||||||||||||||||||||||||||||| | |||||||| || |||| ||| || | |||||   ||| |||||||||||||||    
T  40884 cagagagataaatggcactaacattgtcacaatacaccaaagtggcctgaggaataggaaaatgaagctccaataaaagg-ttacgaatccaacatgact 40786  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    |||||||||||||| ||||| |||||| ||||||||||||||| ||  ||||||||||||||||| |||||||| |||||||||| ||||||||||||||    
T  40785 cagatacaacattagcaacacctctatattcggcttcagcactggagtgagagagagtgggctgccttttggaagaccaagagataaggttgtcaccaag 40686  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtaggagataagctttgtgatggagaatagtgataaa 310  Q
    |||||||||||| |||||||||||||||| ||| |||||||||  |||||||||||||||  ||||||||| |||||||||||||| | || ||||||||    
T  40685 aaaaacacagtacccagatgtagaacgtcgggtatcaggacatctaccccaatcagcgtccgtgtaggagagaagctttgtgatgggggatggtgataaa 40586  T
Q  311 tgtaatccgtagtgtatg 328  Q
    ||||| ||  ||||||||    
T  40585 tgtaacccaaagtgtatg 40568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 1586399 - 1586638
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||| |||||||  |||| |||||||||| ||||    
T  1586399 cagagagatagatgacactaacattgtcacaatacaccaaagtgccatgaggaatagggaaatgaagttccagtaaaag-attacgaatccaacaagact 1586497  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    || ||||||||||| ||||| |||||| ||| ||||||||||||||| |||||||||| || ||| |||||||| |||||||||| ||||||||||||||    
T  1586498 catatacaacattagcaacacctctatattcagcttcagcactagactgagagagagtaggttgccttttggaagaccaagagataaggttgtcaccaag 1586597  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggac 251  Q
    ||||||||||||  ||||||| |||||||| ||||||||||    
T  1586598 aaaaacacagtactcagatgtggaacgtctagtgtcaggac 1586638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 40621022 - 40620867
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    ||||||| || ||||||||||||||||||||||||||||| ||  | || ||||| || |||| ||| || ||| ||||  ||| ||| |||| ||||||    
T  40621022 cagagagataaatgacactaacattgtcacaatacaccaacgtatcctggggaatgggaaaatgaagctccagt-aaaaggttacgaagccaatatgact 40620924  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagag 167  Q
    || ||||||||||| |||   || ||| |||||||||| ||||||| ||||||||||    
T  40620923 caaatacaacattagcaaggcctttatattcggcttcaacactagaacgagagagag 40620867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 1587939 - 1587988
Alignment:
Q  247 aggacattcaccccaatcagcgtcattgtaggagataagctttgtgatgg 296  Q
    |||||||||| |||||||||||||  |||| ||||||||| |||||||||    
T  1587939 aggacattcatcccaatcagcgtcggtgtatgagataagcattgtgatgg 1587988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 6e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 40270581 - 40270857
Alignment:
Q  19 tagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgactcagataca 118  Q
    |||||| |||||||||||||| |||||||||||||| | ||| |||| || ||||  ||||| || || || |||  |||||||||| || ||||| |||    
T  40270581 tagatggcactaacattgtcataatacaccaaagtggcctgatgaataggaaaatggagttccag-aagaagattgcgaatccaacacgattcagagaca 40270679  T
Q  119 acattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaagaaaaacac 218  Q
    |||||  ||||| |||||| ||| |||||||||||||| || |||||||| ||||||  ||||||| ||||||| || ||||||||||| ||||||||||    
T  40270680 acatttgcaacacctctatattcagcttcagcactagaacgggagagagttggctgccgtttggaagaccaagaaataaggttgtcacctagaaaaacac 40270779  T
Q  219 agtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtaggagataagctttgtgatgg 296  Q
    | || |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  40270780 aataaccagatgtagaacgtctggtgtcaggacatccaccccaatcagcgtcagtgtaggagataagctttgtaatgg 40270857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 98 - 288
Target Start/End: Complemental strand, 31343053 - 31342863
Alignment:
Q  98 atccaacatgactcagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatga 197  Q
    ||||||||| | ||||| |||||||| ||||||  ||||| ||| |||||| ||||||| ||||||||| | |||||| |||| ||| |||||||||| |    
T  31343053 atccaacataattcagacacaacattcacaacacttctatattcagcttcaacactagaacgagagagaataggctgcctttttgaagaccaagagataa 31342954  T
Q  198 ggttgtcaccaagaaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtaggagataagctt 288  Q
    | ||||| |  |||||||||||||| || ||||| || ||||| ||| || ||||| ||||||| |||| |||| |||| ||||| |||||    
T  31342953 gattgtcgctgagaaaaacacagtacccggatgtggagcgtctagtgacatgacatccaccccagtcagagtcaatgtaagagatcagctt 31342863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 100 - 285
Target Start/End: Complemental strand, 23584009 - 23583824
Alignment:
Q  100 ccaacatgactcagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgagg 199  Q
    |||||| || |||||||| |||||| ||||| | || |  || ||||  |||||||||||||| || ||||| ||  | |||||| |||| || ||||||    
T  23584009 ccaacaagattcagataccacattagcaacacccctgtactcagcttttgcactagaccgagaaagtgtgggttgtctcttggaagaccaggaaatgagg 23583910  T
Q  200 ttgtcaccaagaaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtaggagataag 285  Q
    || ||||||||||| ||||| || ||||| |||||||| | ||||||||||||| ||||| ||||||| ||| | |||||||||||    
T  23583909 ttatcaccaagaaatacacaatagccagaagtagaacgacgggtgtcaggacatccacccgaatcagcatcagtataggagataag 23583824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 38614416 - 38614542
Alignment:
Q  139 ttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaagaaaaacacagtatccagatgtagaacgt 238  Q
    ||||||||| |||||||| || || |  |||||||||  ||| ||  ||||||| || ||||| || |||||||| |||||||| ||||| ||||| |||    
T  38614416 ttcggcttcggcactagatcgggataaggtgggctgccgtttagatgaccaagatatcaggttatctccaagaaagacacagtagccagaagtagaccgt 38614515  T
Q  239 ctggtgtcaggacattcaccccaatca 265  Q
    || ||||| || ||  |||||||||||    
T  38614516 ctagtgtcggggcacccaccccaatca 38614542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 24210080 - 24209813
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    |||| ||||||||| ||||||||||||||||||||||||||||  | |||||||| || || |  || || ||||| |  |||| ||| |||||||||||    
T  24210080 cagataggtagatggcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctccagtaagag-attacgaagccaacatgact 24209982  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    |||| ||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||| ||  | |||||  |||||| ||||||||||||||| ||    
T  24209981 cagacacaacattagcaacacctctatattccgcttcagcactagaccgagagagagtgggttgtctcttggaggaccaagcgatgaggttgtcaccgag 24209882  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtagga 279  Q
    ||| |||||||||||||| || ||||||| ||||||||||||| |||||||||| |||||| |||||||    
T  24209881 aaagacacagtatccagaagtggaacgtcgggtgtcaggacatccaccccaatcggcgtcagtgtagga 24209813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 45029857 - 45029590
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    |||| ||||||||| ||||||||||||||||||||||||||||  | |||||||| || || |  || || ||||| |  |||| ||| |||||||||||    
T  45029857 cagataggtagatggcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctccagtaagag-attacgaagccaacatgact 45029759  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    |||| ||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||| ||  | |||||  |||||| ||||||||||||||| ||    
T  45029758 cagacacaacattagcaacacctctatattccgcttcagcactagaccgagagagagtgggttgtctcttggaggaccaagcgatgaggttgtcaccgag 45029659  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtagga 279  Q
    ||| |||||||||||||| || ||||||| ||||||||||||| |||||||||| | |||| |||||||    
T  45029658 aaagacacagtatccagaagtggaacgtcgggtgtcaggacatccaccccaatcggagtcagtgtagga 45029590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 45034703 - 45034441
Alignment:
Q  16 aggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgactcagat 115  Q
    ||||||||| ||||||||||||||||||||||||||||  | |||||||| || || |  || || ||||| |  |||| ||| |||||||||||||||     
T  45034703 aggtagatggcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctccagtaagag-attacgaagccaacatgactcagac 45034605  T
Q  116 acaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaagaaaaa 215  Q
    ||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||| ||  | |||||  |||||| ||||||||||||||| ||||| |    
T  45034604 acaacattagcaacacctctatattccgcttcagcactagaccgagagagagtgggttgtctcttggaggaccaagcgatgaggttgtcaccgagaaaga 45034505  T
Q  216 cacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtagga 279  Q
    ||||||||||||| || ||||||| ||||||||||||| |||||||||| | |||| |||||||    
T  45034504 cacagtatccagaagtggaacgtcgggtgtcaggacatccaccccaatcggtgtcagtgtagga 45034441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 9932317 - 9932590
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    |||| ||||| ||| |||||||||| |||||||||||||||||  | ||||  | |||||||| |||||| |  | ||   ||| ||| |||||| || |    
T  9932317 cagaaaggtaaatggcactaacattatcacaatacaccaaagtagcttgagagagtgggaaatgaagttccaagagaagg-ttacgaagccaacaagatt 9932415  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    ||||||| |||||| ||||| | || |  || ||||| |||||||| || || || ||||| ||    |||||| |||| ||||||||||||||||||||    
T  9932416 cagataccacattagcaacacccctgtactcagcttctgcactagagcgcgaaagtgtgggttgtcgcttggaagaccaggagatgaggttgtcaccaag 9932515  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtaggagataag 285  Q
    ||| ||||| || ||||| |||||||| | |||||| |||||| ||||||||||||| ||| | |||||||||||    
T  9932516 aaacacacaatagccagaggtagaacgacgggtgtctggacatccaccccaatcagcatcagtataggagataag 9932590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 285
Target Start/End: Complemental strand, 44387282 - 44387175
Alignment:
Q  178 tttggaaaaccaagagatgaggttgtcaccaagaaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtag 277  Q
    ||||||| ||||||| |||||||||||||||||||| ||||| || ||||  || ||||| | ||||||||||||| ||||||||||||| ||| |||||    
T  44387282 tttggaagaccaagaaatgaggttgtcaccaagaaacacacaatagccagcggtcgaacgacgggtgtcaggacatccaccccaatcagcatcagtgtag 44387183  T
Q  278 gagataag 285  Q
    ||||||||    
T  44387182 gagataag 44387175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 19330090 - 19329838
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    |||| ||||||||  ||||||||||||||||||| |||  |||||| |||||||| || || | ||| || | || || |||| |||||||||||||| |    
T  19330090 cagataggtagatagcactaacattgtcacaatataccggagtgacttgaggaatgggaaagtgaagctccaatagaa-tattgtgaatccaacatgatt 19329992  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    | || ||||  ||  ||||| | |||| ||| | |||||||||||| ||||| ||||||| || | |||||||| |||||||||| ||||||| ||| ||    
T  19329991 cggagacaaagtttgcaacacccctatattcagtttcagcactagaacgagaaagagtgg-cttccttttggaagaccaagagataaggttgttaccgag 19329893  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatca 265  Q
    ||||| ||| ||  ||||||| || ||||  ||||| |||||| |||||||||||    
T  19329892 aaaaagacaatactcagatgttgagcgtcgagtgtcgggacatccaccccaatca 19329838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 264
Target Start/End: Original strand, 7324530 - 7324694
Alignment:
Q  100 ccaacatgactcagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgagg 199  Q
    |||||| ||||||||||| |||||  ||||| |||  | |||||||||||||||||| ||||| |  ||||| ||   ||||||| |||| ||||  ||     
T  7324530 ccaacaagactcagatacgacattggcaacacctcggtattcggcttcagcactagagcgagataatgtgggttggcgtttggaagaccatgagagtaga 7324629  T
Q  200 ttgtcaccaagaaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    |||||||||||||| ||||| || ||||| ||||| |  ||||| || |||||| | ||||||||    
T  7324630 ttgtcaccaagaaatacacaataaccagacgtagatctcctggtatctggacatccgccccaatc 7324694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 44387448 - 44387408
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaa 51  Q
    |||| ||||||||| |||||||||| |||||||||||||||    
T  44387448 cagaaaggtagatggcactaacattatcacaatacaccaaa 44387408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 31958 - 31682
Alignment:
Q  19 tagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgactcagataca 118  Q
    |||||| ||||||||||||||||||||||||||||  | |||||||| || ||||  ||||| || || || |||  ||||| |||| || ||||| | |    
T  31958 tagatggcactaacattgtcacaatacaccaaagttgcctgaggaataggaaaatggagttccag-aagaagattgcgaatctaacacgattcagagata 31860  T
Q  119 acattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaagaaaaacac 218  Q
    |||||  ||||| ||| || ||| ||||||||||||||  | |||||||| |||||| |||||||| ||||||| || ||||||||||| ||||||||||    
T  31859 acatttgcaacacctcgatattcagcttcagcactagaatgggagagagttggctgccttttggaagaccaagaaataaggttgtcacctagaaaaacac 31760  T
Q  219 agtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtaggagataagctttgtgatgg 296  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| ||| ||||    
T  31759 agtatacagatgtagaacgtctggtgtcaggacatccaccccaatcagcgtcagtgtaggagagaagctatgtaatgg 31682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 16594725 - 16594427
Alignment:
Q  19 tagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgactcagataca 118  Q
    |||||| ||||||||||||||||||||||||||||| | | |||||| || ||||  |||||||| | ||  |||  |||||||||| || || || |||    
T  16594725 tagatggcactaacattgtcacaatacaccaaagtggcctcaggaataggaaaatggagttctaggagaag-attgcgaatccaacacgattcggaaaca 16594627  T
Q  119 acattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaagaaaaacac 218  Q
    |||||  ||||  | |||| |||||||||||||||||| || |||||||| || ||| |||||||| ||||||| || ||||||||||| ||||||||||    
T  16594626 acatttgcaactcccctatattcggcttcagcactagaacgggagagagtaggttgccttttggaagaccaagaaataaggttgtcacctagaaaaacac 16594527  T
Q  219 agtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtaggagataagctttgtgat-ggagaatagtgataaatgtaatc 317  Q
    |||| ||||||||||| ||||| |||||||||||| ||||||||||||||||| |||||||||| | |||||| || |||| || |||||||||||||||    
T  16594526 agtaaccagatgtagaccgtctagtgtcaggacatccaccccaatcagcgtcagtgtaggagatcaactttgtaataggag-atggtgataaatgtaatc 16594428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 33166096 - 33165829
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    |||| ||||||||| ||||||||||||||||||||||||||||  | |||||||| || || |  || ||  |||| |  |||| ||| |||||||||||    
T  33166096 cagataggtagatggcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctcctgtaagag-attacgaagccaacatgact 33165998  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    |||| ||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||| ||  | |||||  |||||| ||||||||||||||| ||    
T  33165997 cagacacaacattagcaacacctctatattccgcttcagcactagaccgagagagagtgggttgtctcttggaggaccaagcgatgaggttgtcaccgag 33165898  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgtagga 279  Q
    ||| |||||||||||||| || ||||||| ||||||||||||| |||||||||| |||||| |||||||    
T  33165897 aaagacacagtatccagaagtggaacgtcaggtgtcaggacatccaccccaatcggcgtcagtgtagga 33165829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 1546095 - 1546351
Alignment:
Q  19 tagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgactcagataca 118  Q
    |||||| ||||||||||||||||||| |||| |||| |||||||||| || |||| ||  || || || ||  ||  || |||| || || ||||| |||    
T  1546095 tagatggcactaacattgtcacaatataccagagtggcatgaggaatgggaaaatgaaactccag-aagaaggttgcgagtccagcaggattcagagaca 1546193  T
Q  119 acattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaagaaaaacac 218  Q
    |||||  ||||| |||||| ||| |||||||||||||| ||||| ||||| | |||| |||||||| |||||||||| || |||||| | ||||||||||    
T  1546194 acattcgcaacacctctatattcagcttcagcactagaacgagaaagagtagactgccttttggaagaccaagagataagattgtcatcgagaaaaacac 1546293  T
Q  219 agtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagcgtcattgta 276  Q
    |||| |||||||| || ||||| |||||||||||| ||||||||||| ||||| ||||    
T  1546294 agtacccagatgtggagcgtctagtgtcaggacatccaccccaatcaacgtcagtgta 1546351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 19337035 - 19337112
Alignment:
Q  186 accaagagatgaggttgtcaccaagaaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaat 263  Q
    ||||||| || ||||| || |||||||| |||||||| ||||| ||||| ||||||||||| || ||  |||||||||    
T  19337035 accaagatatcaggttatctccaagaaagacacagtagccagaagtagaccgtctggtgtcggggcacccaccccaat 19337112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 7084662 - 7084598
Alignment:
Q  203 tcaccaagaaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatcagc 267  Q
    ||||||||||| ||||| || ||||||||||| |||| ||| || |||||  |||||||||||||    
T  7084662 tcaccaagaaacacacaataaccagatgtagagcgtcgggtatccggacacccaccccaatcagc 7084598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University