View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5866_high_53 (Length: 340)
Name: NF5866_high_53
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_high_53 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 44547005 - 44547332
Alignment:
| Q |
13 |
aatatccaatggcatatgcttgcagttctcaacaagttcccagaaaattgttaccaaggcattttcctcaacaacccaacatgaacctacatcatggata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44547005 |
aatatccaatggcatatgcttgcagttctcaacaagttcccagaaaattgttaccaaggcattttcctcaacaacccaacatgaacctacatcatggata |
44547104 |
T |
|
| Q |
113 |
tgcaacatgggagcaacaacttccaagtgaatgttatatagctgatcacgcagttggtcttggaagcttgacagcgaataatagtaatgcaatgcttcag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44547105 |
tgcaacatgggagcaacaacttccaagtgaatattatatagctgatcacgcagttggtcttggaagcttgacagcgaataatagtaatgcaatgcttcag |
44547204 |
T |
|
| Q |
213 |
caggaagaagatattaataatcaacaacaatcaccaatgcatgttcctcatatgaataatgcagttaatgatggtgtaccgagtgtggacaacatcgtgg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44547205 |
caggaagaagatattaataatcaacaacaatcaccaatgcatgttcctcatatgaataatgcagttaatgatggtgtatcgagtgtggacaacatcgtgg |
44547304 |
T |
|
| Q |
313 |
aagtgaataatactgtaacagatttcgg |
340 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
44547305 |
aagtgaataatactataacagatttcgg |
44547332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University