View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_high_60 (Length: 309)
Name: NF5866_high_60
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_high_60 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 505532 - 505244
Alignment:
| Q |
14 |
aaggcaataagcggggctaagatgatgggagcaagtaagataattggggttgacaaaaacgagatgaagagagaaaaaggagaagcttttgggatgaccc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
505532 |
aaggcaataagcggggctaagatgatgggagcaagtaagataattggggttgacaaaaacgagatgaagagagaaaaaggagaagcttttgggatgaccc |
505433 |
T |
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| Q |
114 |
attttataaattctaacgattctgataaatctgcttcagaattggttaaagagttaaatggaatgggtgtagattattgcattgaatgtactggagtagc |
213 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
505432 |
attttataaattctaatgattctgataaatctgcttcagaattggttaaagagttaaatggaatgggtgtagattattgcattgaatgtactggagtagc |
505333 |
T |
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| Q |
214 |
acctttgcttactgaatctttggaagccacaaaaatggtaattttaactttatcaataatgttgtttggttaatttgattaggcctatg |
302 |
Q |
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| T |
505332 |
acctttgcttactgaatctttggaagccacaaaaatggtaattttaactttatcaataatgttgtttggttaatttgattaggcctatg |
505244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 35 - 165
Target Start/End: Complemental strand, 20051493 - 20051363
Alignment:
| Q |
35 |
atgatgggagcaagtaagataattggggttgacaaaaacgagatgaagagagaaaaaggagaagcttttgggatgacccattttataaattctaacgatt |
134 |
Q |
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||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||| | | | || |
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| T |
20051493 |
atgatgggagcaagtaaaataattggggttgataaaaatgagatgaagagagaaaaaggagaagctttcggaatgacccactttataaatccaagtggtt |
20051394 |
T |
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| Q |
135 |
ctgataaatctgcttcagaattggttaaaga |
165 |
Q |
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| T |
20051393 |
catataagtctgcttctgatttggttaaaga |
20051363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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