View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_high_64 (Length: 281)
Name: NF5866_high_64
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_high_64 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 63326 - 63574
Alignment:
| Q |
20 |
gttacaaacaaaataaaagataaacagtagtaccatacaatcaacttctaaagtagcactggtttatatatggacnnnnnnnncattcaagagttatctt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
63326 |
gttacaaacaaaataaaagataaacagtagtaccatacaatcaacttctaaagtagcactggtttatatatgaacaaaaaaaacattcaagagttatctt |
63425 |
T |
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| Q |
120 |
acactaatgagtatattcaatttcagaaataacatagcagatcagaccattgtgaccagactaatagactaaccttcaaatttcaaaacataacaaaaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63426 |
acactaatgagtatattcaatttcagaaataacacagcagatcagaccattgtgaccagactaatagactaaccttcaaatttcaaaacataacaaaaaa |
63525 |
T |
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| Q |
220 |
ggacctgtgtaataaacatctttttaatcgaatttaagccctctcacct |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63526 |
ggacctgtgtaataaacatctttttaatcgaatttaagccctctcacct |
63574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 21320473 - 21320225
Alignment:
| Q |
20 |
gttacaaacaaaataaaagataaacagtagtaccatacaatcaacttctaaagtagcactggtttatatatggacnnnnnnnncattcaagagttatctt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
21320473 |
gttacaaacaaaataaaagataaacagtagtaccatacaatcaacttctaaagtagcactggtttatatatgaacaaaaaaaacattcaagagttatctt |
21320374 |
T |
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| Q |
120 |
acactaatgagtatattcaatttcagaaataacatagcagatcagaccattgtgaccagactaatagactaaccttcaaatttcaaaacataacaaaaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21320373 |
acactaatgagtatattcaatttcagaaataacacagcagatcagaccattgtgaccagactaatagactaaccttcaaatttcaaaacataacaaaaaa |
21320274 |
T |
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| Q |
220 |
ggacctgtgtaataaacatctttttaatcgaatttaagccctctcacct |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21320273 |
ggacctgtgtaataaacatctttttaatcgaatttaagccctctcacct |
21320225 |
T |
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