View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_high_8 (Length: 622)
Name: NF5866_high_8
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 18 - 610
Target Start/End: Complemental strand, 36269315 - 36268725
Alignment:
| Q |
18 |
gatcaaaggaacaattatgtgcaaactgaggcttgcacttataatactgcaccattagttggagtttttgcaaaattcttgcaaatagggaatagaaggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36269315 |
gatcaaaggaacaattatgtgcaaactgaggcttgcacttataatactgcaccattagttggagtttttgcaaaattcttgcaaatagggaatagaaggt |
36269216 |
T |
|
| Q |
118 |
tggttcatgattctgattcacttttagttgcttccttttaaatactnnnnnnnnnnnnnngtcaaagcacaatagtatattattgtcaaaagtcaattaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36269215 |
tggttcatgattctgattcacttttagttgcttccttttaaatacttatatatatata--gtcaaagcacaatagtatattattgtcaaaagtcaattaa |
36269118 |
T |
|
| Q |
218 |
attcttcagttttccccctattttatgagtgatattttagcttaaagaatgtannnnnnncttaaacaaatttttataaatttgttaatattatagtggc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36269117 |
attcttcagttttccccctattttatgagtgatattttagcttaaagaatgtatttttttcttaaacaaatttttataaatttgttaatattatagtggc |
36269018 |
T |
|
| Q |
318 |
aaaagattgaatgtgtgtcaaatttttgatttgttaattcttaaatacatgcaaaacatcaaaatgtatttagtccaaatttacaccaaatacattttga |
417 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36269017 |
aaaagattgaatgtgtgtcaaatttttgagttgttaattcttaaatacatgcaaaacatcaaaatgtatttagtccaaatttacaccaaatacattttga |
36268918 |
T |
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| Q |
418 |
cttttggttatattttaaactagagatattatctgtgaaaacactcaatggtcattggatcatgatagaaatctaaatgcactcggggccaacgactcta |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
36268917 |
cttttggttatattttaaactagagatattatctgtgaaaacactcaatggtcattggatcatgatacaaatctaaatgcatccggggccaacgactcta |
36268818 |
T |
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| Q |
518 |
caactattgtgcacatggatcctaaagctaattttattaaaatcctcaatgtcctatccaatagatattacaatcaaatcaattgatgatatt |
610 |
Q |
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| T |
36268817 |
caactattgtgcatatggatcctaaagctaatttcattaaaatcctcaatgtcctatccaatagatattacaatcaaatcaattgatgatatt |
36268725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 37044013 - 37044096
Alignment:
| Q |
17 |
agatcaaaggaacaattatgtgcaaactgaggcttgcacttataatactgcaccattagttggagtttttgcaaaattcttgca |
100 |
Q |
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|||| |||||||||||| ||||||||||||||||||| || |||||||| || ||||| | |||||||||| |||||||| |
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| T |
37044013 |
agataaaaggaacaatttcatgcaaactgaggcttgcacatacaatactgcccctttagtagctctttttgcaaagttcttgca |
37044096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 34555662 - 34555596
Alignment:
| Q |
376 |
tcaaaatgtatttagtccaaatttacaccaaatacattttgacttttggttatattttaaactagag |
442 |
Q |
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|||||| |||||||| ||| || | |||||||||||||||||||||| |||||||| |||| |||| |
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| T |
34555662 |
tcaaaacgtatttagcccagataaagaccaaatacattttgacttttgcttatatttaaaaccagag |
34555596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 24202453 - 24202397
Alignment:
| Q |
376 |
tcaaaatgtatttagtccaaatttacaccaaatacattttgacttttggttatattt |
432 |
Q |
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||||||||||||||| |||||| | || |||||||||||||||||| |||||||| |
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| T |
24202453 |
tcaaaatgtatttagctcaaattgatactaaatacattttgacttttatttatattt |
24202397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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