View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5866_high_84 (Length: 246)

Name: NF5866_high_84
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5866_high_84
NF5866_high_84
[»] chr3 (41 HSPs)
chr3 (18-143)||(3895096-3895221)
chr3 (89-142)||(265159-265212)
chr3 (89-143)||(7639654-7639708)
chr3 (89-139)||(42896632-42896682)
chr3 (89-143)||(49758237-49758291)
chr3 (93-143)||(50099206-50099256)
chr3 (94-139)||(13043141-13043186)
chr3 (94-139)||(13051218-13051263)
chr3 (95-143)||(17438582-17438630)
chr3 (104-143)||(18461142-18461181)
chr3 (96-143)||(22177561-22177608)
chr3 (89-143)||(26130972-26131027)
chr3 (93-139)||(19245528-19245574)
chr3 (89-143)||(22102612-22102666)
chr3 (90-143)||(5811942-5811995)
chr3 (95-140)||(54768140-54768185)
chr3 (94-142)||(285666-285714)
chr3 (103-143)||(41817387-41817427)
chr3 (103-142)||(5492835-5492874)
chr3 (104-143)||(9350321-9350360)
chr3 (96-143)||(9862262-9862309)
chr3 (104-143)||(19225119-19225158)
chr3 (89-140)||(27947952-27948003)
chr3 (89-143)||(5907140-5907194)
chr3 (97-143)||(21790321-21790367)
chr3 (89-139)||(22152459-22152509)
chr3 (89-143)||(22258430-22258484)
chr3 (93-135)||(25478954-25478996)
chr3 (93-139)||(35379563-35379609)
chr3 (91-140)||(10438466-10438515)
chr3 (95-140)||(18388610-18388655)
chr3 (93-138)||(21091804-21091849)
chr3 (89-142)||(25842533-25842586)
chr3 (106-143)||(46931749-46931786)
chr3 (96-140)||(796651-796695)
chr3 (87-143)||(4615357-4615412)
chr3 (102-142)||(12141379-12141419)
chr3 (103-143)||(18540391-18540431)
chr3 (94-138)||(21495759-21495803)
chr3 (102-142)||(39903759-39903799)
chr3 (103-143)||(45879993-45880033)
[»] chr2 (30 HSPs)
chr2 (16-143)||(42057085-42057209)
chr2 (89-143)||(9191988-9192042)
chr2 (96-143)||(41014472-41014519)
chr2 (89-143)||(15265766-15265820)
chr2 (89-143)||(41633373-41633427)
chr2 (89-138)||(13450352-13450401)
chr2 (89-142)||(44019864-44019917)
chr2 (89-135)||(8875285-8875331)
chr2 (94-135)||(13594086-13594127)
chr2 (102-139)||(21839803-21839840)
chr2 (89-138)||(21885154-21885203)
chr2 (98-143)||(27359860-27359905)
chr2 (89-142)||(34753399-34753452)
chr2 (87-130)||(14371597-14371640)
chr2 (95-138)||(17373853-17373896)
chr2 (98-133)||(20579287-20579322)
chr2 (96-143)||(34063422-34063469)
chr2 (93-143)||(42060229-42060279)
chr2 (95-140)||(9169947-9169992)
chr2 (90-143)||(22277727-22277780)
chr2 (89-138)||(24004405-24004454)
chr2 (93-138)||(33134359-33134404)
chr2 (98-143)||(45407197-45407242)
chr2 (87-135)||(14706464-14706512)
chr2 (107-139)||(24004934-24004966)
chr2 (103-143)||(25915055-25915095)
chr2 (87-143)||(29462882-29462938)
chr2 (96-140)||(35916904-35916948)
chr2 (107-139)||(36817354-36817386)
chr2 (87-143)||(38147818-38147874)
[»] chr5 (29 HSPs)
chr5 (89-142)||(936320-936373)
chr5 (87-137)||(35272229-35272279)
chr5 (93-138)||(16313452-16313497)
chr5 (87-139)||(42506447-42506499)
chr5 (89-139)||(9524091-9524141)
chr5 (89-143)||(14000663-14000717)
chr5 (87-143)||(28766484-28766540)
chr5 (95-143)||(39956005-39956053)
chr5 (89-143)||(19929638-19929692)
chr5 (89-143)||(23270848-23270902)
chr5 (89-143)||(24836945-24836999)
chr5 (89-135)||(28867406-28867452)
chr5 (89-138)||(834021-834070)
chr5 (98-143)||(8231071-8231116)
chr5 (94-143)||(31659582-31659631)
chr5 (107-143)||(248789-248825)
chr5 (104-140)||(9514963-9514999)
chr5 (87-135)||(19018840-19018888)
chr5 (105-141)||(19650851-19650887)
chr5 (95-143)||(33168470-33168518)
chr5 (96-143)||(38455300-38455347)
chr5 (89-135)||(1611834-1611880)
chr5 (89-143)||(6062191-6062245)
chr5 (92-142)||(17014231-17014281)
chr5 (101-138)||(7937954-7937991)
chr5 (90-135)||(31180965-31181010)
chr5 (94-134)||(3295810-3295850)
chr5 (103-143)||(20176321-20176361)
chr5 (95-143)||(28868144-28868192)
[»] chr7 (29 HSPs)
chr7 (89-140)||(15646954-15647005)
chr7 (89-143)||(25617441-25617494)
chr7 (89-139)||(39435170-39435220)
chr7 (94-143)||(21766028-21766077)
chr7 (87-139)||(10199472-10199524)
chr7 (93-140)||(1787153-1787200)
chr7 (93-143)||(5800443-5800493)
chr7 (93-143)||(46759430-46759480)
chr7 (89-138)||(581594-581643)
chr7 (89-142)||(10040600-10040653)
chr7 (87-143)||(21635041-21635097)
chr7 (88-143)||(19008225-19008280)
chr7 (87-142)||(31176888-31176943)
chr7 (89-143)||(1303238-1303292)
chr7 (93-143)||(30240660-30240709)
chr7 (90-140)||(39389721-39389770)
chr7 (93-142)||(4550508-4550557)
chr7 (94-143)||(47901927-47901976)
chr7 (90-138)||(581870-581918)
chr7 (87-143)||(20149294-20149350)
chr7 (87-143)||(48109824-48109880)
chr7 (96-143)||(19371922-19371969)
chr7 (96-143)||(42963129-42963176)
chr7 (94-140)||(9412893-9412939)
chr7 (102-139)||(22479801-22479838)
chr7 (94-138)||(5757055-5757099)
chr7 (90-142)||(8390551-8390603)
chr7 (87-135)||(39466040-39466088)
chr7 (103-143)||(40356203-40356243)
[»] chr8 (18 HSPs)
chr8 (89-143)||(4430033-4430087)
chr8 (87-137)||(38804478-38804528)
chr8 (93-135)||(11938017-11938059)
chr8 (89-143)||(18994563-18994617)
chr8 (89-142)||(5918833-5918886)
chr8 (89-140)||(26784856-26784907)
chr8 (93-143)||(1759469-1759519)
chr8 (89-139)||(11916124-11916174)
chr8 (93-143)||(13150141-13150191)
chr8 (103-143)||(15044121-15044160)
chr8 (96-140)||(15916926-15916970)
chr8 (93-135)||(18279191-18279233)
chr8 (93-139)||(27837753-27837799)
chr8 (88-141)||(3825395-3825448)
chr8 (90-138)||(5625967-5626015)
chr8 (87-139)||(12838771-12838823)
chr8 (107-143)||(14436503-14436539)
chr8 (93-141)||(15898963-15899011)
[»] chr1 (42 HSPs)
chr1 (80-142)||(15597531-15597593)
chr1 (89-142)||(34011037-34011090)
chr1 (93-140)||(5880743-5880790)
chr1 (89-143)||(10729246-10729300)
chr1 (93-143)||(11842800-11842850)
chr1 (103-143)||(37705670-37705710)
chr1 (89-140)||(5965569-5965620)
chr1 (92-143)||(15470661-15470712)
chr1 (80-143)||(27926631-27926694)
chr1 (89-143)||(26342847-26342901)
chr1 (93-143)||(46880213-46880263)
chr1 (87-132)||(650142-650187)
chr1 (87-140)||(50944450-50944503)
chr1 (107-143)||(4968856-4968892)
chr1 (90-130)||(9971887-9971927)
chr1 (90-134)||(34749026-34749070)
chr1 (102-142)||(44921755-44921795)
chr1 (91-139)||(49162919-49162967)
chr1 (96-143)||(33933961-33934008)
chr1 (88-143)||(40368202-40368256)
chr1 (89-138)||(1531071-1531121)
chr1 (93-135)||(1581027-1581069)
chr1 (93-143)||(8574243-8574293)
chr1 (94-140)||(15476624-15476670)
chr1 (103-137)||(20906968-20907002)
chr1 (93-131)||(27307624-27307662)
chr1 (98-140)||(43723708-43723750)
chr1 (89-139)||(47402461-47402511)
chr1 (94-143)||(11345133-11345182)
chr1 (97-138)||(12780433-12780474)
chr1 (94-139)||(16424684-16424729)
chr1 (93-138)||(25821962-25822007)
chr1 (93-134)||(44648438-44648479)
chr1 (87-140)||(44667964-44668017)
chr1 (95-139)||(2666375-2666419)
chr1 (93-141)||(4242263-4242311)
chr1 (94-138)||(9822457-9822501)
chr1 (95-143)||(11409177-11409225)
chr1 (102-142)||(23655233-23655273)
chr1 (87-143)||(24004843-24004899)
chr1 (89-137)||(40808574-40808622)
chr1 (107-139)||(50946020-50946052)
[»] chr4 (23 HSPs)
chr4 (89-142)||(20702719-20702772)
chr4 (87-143)||(5720230-5720286)
chr4 (96-143)||(17702659-17702706)
chr4 (87-143)||(23091131-23091187)
chr4 (93-143)||(161001-161051)
chr4 (96-142)||(669829-669875)
chr4 (92-138)||(37143614-37143660)
chr4 (95-140)||(5190629-5190674)
chr4 (89-142)||(7438071-7438124)
chr4 (87-143)||(5499199-5499255)
chr4 (87-135)||(17702387-17702435)
chr4 (87-143)||(26088916-26088971)
chr4 (92-143)||(11064306-11064357)
chr4 (93-140)||(35519269-35519316)
chr4 (96-143)||(37143138-37143185)
chr4 (93-143)||(35034636-35034685)
chr4 (89-138)||(23986111-23986160)
chr4 (87-140)||(35447490-35447543)
chr4 (87-139)||(10128619-10128671)
chr4 (95-135)||(15849755-15849795)
chr4 (95-143)||(21122420-21122468)
chr4 (107-143)||(34659435-34659471)
chr4 (103-143)||(37013133-37013173)
[»] scaffold0707 (1 HSPs)
scaffold0707 (92-140)||(196-244)
[»] chr6 (19 HSPs)
chr6 (92-140)||(33573663-33573711)
chr6 (94-143)||(32531312-32531361)
chr6 (92-140)||(9894247-9894295)
chr6 (96-138)||(10587658-10587700)
chr6 (89-139)||(12169696-12169746)
chr6 (89-139)||(24062809-24062859)
chr6 (87-139)||(21104758-21104810)
chr6 (88-143)||(4996722-4996777)
chr6 (96-135)||(10343228-10343267)
chr6 (89-140)||(17264146-17264197)
chr6 (112-143)||(22534902-22534933)
chr6 (88-139)||(26251765-26251816)
chr6 (92-143)||(28592858-28592909)
chr6 (98-132)||(1212059-1212093)
chr6 (90-143)||(1190713-1190765)
chr6 (99-140)||(5442438-5442479)
chr6 (93-134)||(6874952-6874993)
chr6 (93-141)||(2441635-2441683)
chr6 (98-138)||(32349216-32349256)
[»] scaffold0330 (1 HSPs)
scaffold0330 (89-138)||(18683-18732)
[»] scaffold0240 (1 HSPs)
scaffold0240 (89-138)||(2701-2750)
[»] scaffold0068 (1 HSPs)
scaffold0068 (89-140)||(57439-57490)
[»] scaffold0268 (1 HSPs)
scaffold0268 (93-139)||(21407-21453)
[»] scaffold0123 (1 HSPs)
scaffold0123 (89-143)||(30666-30720)
[»] scaffold0649 (1 HSPs)
scaffold0649 (87-140)||(8249-8302)
[»] scaffold0036 (1 HSPs)
scaffold0036 (92-140)||(61544-61592)
[»] scaffold1379 (1 HSPs)
scaffold1379 (87-142)||(1483-1538)
[»] scaffold0229 (1 HSPs)
scaffold0229 (98-132)||(13221-13255)
[»] scaffold0294 (1 HSPs)
scaffold0294 (93-141)||(1735-1783)
[»] scaffold0005 (1 HSPs)
scaffold0005 (95-143)||(254695-254743)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 3895221 - 3895096
Alignment:
Q  18 ttgaaaaattttgacatctnnnnnnnncttgatttttatagtcttttaaatctttatacatgactagcgatgtgcccgtcttttcgctcttttaattgcg 117  Q
    |||||||||||||||||||        ||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  3895221 ttgaaaaattttgacatctaaaaaaaacttgatttttacaatcttttaaatctttatacatgactagcgatgtgtccgtcttttcgctctttttattgcg 3895122  T
Q  118 ctaacgtttgaaaattatgaacggtg 143  Q
    |||||||||||||  ||| |||||||    
T  3895121 ctaacgtttgaaatctataaacggtg 3895096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 265212 - 265159
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    |||||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  265212 gtgcccgtctttccgctctttttattgcgctaacgtttgaaagttatgaacggt 265159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 7639708 - 7639654
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  7639708 gtgcctgtctttccgctctttttattgcgctaacgtttgaaaattatgaatggtg 7639654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 42896632 - 42896682
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  42896632 gtgcccgtctttccgctctttttattgcgctaacgtttcaaaattatgaac 42896682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 49758237 - 49758291
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||||||||||||||||| |||||| ||||||||||||||| |||| ||||    
T  49758237 gtgcccgtcttttcgctctttttattgcgttaacgtttgaaaattttgaagggtg 49758291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 50099256 - 50099206
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||||||||    
T  50099256 ccgtcttttcgctctttttattgcactaacgtttaaaaattatgaacggtg 50099206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 13043141 - 13043186
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  13043141 cgtctttccgctctttttattgcgctaacgtttgaaaattatgaac 13043186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 13051218 - 13051263
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  13051218 cgtctttccgctctttttattgcgctaacgtttgaaaattatgaac 13051263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 17438582 - 17438630
Alignment:
Q  95 gtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  17438582 gtcttttcgctctttttgttgcgctaatgtttgaaaattatgaacggtg 17438630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 18461142 - 18461181
Alignment:
Q  104 ctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  18461142 ctctttttattgcgctaacgtttgaaaattatgaacggtg 18461181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 22177608 - 22177561
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  22177608 tctttccgctctttttattgcgttaacgtttgaaaattatgaacggtg 22177561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 26131027 - 26130972
Alignment:
Q  89 gtgcccgtcttttc-gctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  26131027 gtgctcgtcttttccgctctttttattgcgctaacgtttgataattatgaacggtg 26130972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 19245574 - 19245528
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  19245574 ccgtctttccgctctttttattgcgctaacgtttaaaaattatgaac 19245528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 22102666 - 22102612
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||| ||||| | ||||||| |||||| |||||||||||||||||||||||||    
T  22102666 gtgcccctctttccactctttttattgcgttaacgtttgaaaattatgaacggtg 22102612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 5811942 - 5811995
Alignment:
Q  90 tgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||||| ||||||||| ||| ||||||| |||||||||||| |||||||    
T  5811942 tgcccgtctttccgctctttttatttcgctaacatttgaaaattattaacggtg 5811995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 54768185 - 54768140
Alignment:
Q  95 gtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||||||||||||| |||||  ||||||||||||||||||||||    
T  54768185 gtcttttcgctctttttattgcattaacgtttgaaaattatgaacg 54768140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 285666 - 285714
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    ||||||||| || |||| |||||| ||||||||||||||||||||||||    
T  285666 cgtcttttcactatttttattgcgttaacgtttgaaaattatgaacggt 285714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 41817427 - 41817387
Alignment:
Q  103 gctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  41817427 gctctttttattgcgctaacgtttgaaaattttgaacggtg 41817387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 5492835 - 5492874
Alignment:
Q  103 gctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  5492835 gctctttttattgcgctaaagtttgaaaattatgaacggt 5492874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 9350360 - 9350321
Alignment:
Q  104 ctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  9350360 ctctttttattgcgctaacgtttgaaaattatgaatggtg 9350321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 9862309 - 9862262
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||  |||||| ||| ||||||||||||||||||||||||||||    
T  9862309 tcttttctatctttttattacgctaacgtttgaaaattatgaacggtg 9862262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 19225158 - 19225119
Alignment:
Q  104 ctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  19225158 ctctttttattgcgttaacgtttgaaaattatgaacggtg 19225119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 27948003 - 27947952
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||||||||| |||||||||  |||||||||| |||||||||||| ||||    
T  27948003 gtgcccgtctttccgctctttttgttgcgctaacatttgaaaattataaacg 27947952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 5907140 - 5907194
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||| ||||| ||||||||| ||| ||||||||||| |||||||||| |||||    
T  5907140 gtgcccatctttccgctctttttattacgctaacgtttcaaaattatgagcggtg 5907194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 21790321 - 21790367
Alignment:
Q  97 cttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||| ||||||||| ||||| |||||||||||||||||||| |||||    
T  21790321 ctttccgctctttttattgcactaacgtttgaaaattatgagcggtg 21790367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 22152509 - 22152459
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||||||| ||| ||||||||| |||| | |||||||||||||||||||||    
T  22152509 gtgcccgtttttccgctctttttattgtggtaacgtttgaaaattatgaac 22152459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 22258430 - 22258484
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||||||||| ||||||| ||| | ||||||| |||||||||| |||||||    
T  22258430 gtgcccgtcttttctctctttttatttcactaacgtatgaaaattattaacggtg 22258484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 25478954 - 25478996
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattat 135  Q
    |||||||| ||||||||| |||||||| |||||||||||||||    
T  25478954 ccgtctttccgctctttttattgcgctgacgtttgaaaattat 25478996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 35379609 - 35379563
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||||||| ||||||||| ||||||||||||||||||  ||||||||    
T  35379609 ccgtctttccgctctttttattgcgctaacgtttgaaggttatgaac 35379563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 10438515 - 10438466
Alignment:
Q  91 gcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||||||| ||||||||| ||||| |||| |||| |||||||||||||    
T  10438515 gcccgtctttccgctctttttattgcactaaagtttaaaaattatgaacg 10438466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 18388610 - 18388655
Alignment:
Q  95 gtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||| ||||||||| ||||| |||||||||||||||||| ||||    
T  18388610 gtctttccgctctttttattgccctaacgtttgaaaattataaacg 18388655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 21091804 - 21091849
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    |||||||| | ||||||| ||||| |||||||||||||||||||||    
T  21091804 ccgtctttcctctctttttattgcactaacgtttgaaaattatgaa 21091849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 25842586 - 25842533
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    |||||||||||| | ||||||| ||| | |||||| ||||||||||||||||||    
T  25842586 gtgcccgtctttccactctttttattacactaacggttgaaaattatgaacggt 25842533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 46931749 - 46931786
Alignment:
Q  106 cttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  46931749 ctttttattacgctaacgtttgaaaattatgaacggtg 46931786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 796695 - 796651
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    ||||| ||||||||| |||||||||||||| ||||||| ||||||    
T  796695 tctttccgctctttttattgcgctaacgttcgaaaattttgaacg 796651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 4615357 - 4615412
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||||||||||| || ||||| ||  |||||||||||||||||| ||||||||    
T  4615357 atgtgcccgtcttttcactttttta-ttatgctaacgtttgaaaattacgaacggtg 4615412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 12141419 - 12141379
Alignment:
Q  102 cgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    ||||| ||| |||||||||||||||| ||||||||||||||    
T  12141419 cgctcattttattgcgctaacgtttgcaaattatgaacggt 12141379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 18540391 - 18540431
Alignment:
Q  103 gctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| ||||||||||| ||| ||||||||||||||||    
T  18540391 gctctttttattgcgctaacatttaaaaattatgaacggtg 18540431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 21495803 - 21495759
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    ||||||||| ||||||| |||| |||||| |||||||||||||||    
T  21495803 cgtcttttcactctttttattgtgctaacatttgaaaattatgaa 21495759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 39903759 - 39903799
Alignment:
Q  102 cgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    ||||||||| ||||| |||||||||||||||||| ||||||    
T  39903759 cgctctttttattgcactaacgtttgaaaattataaacggt 39903799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 45880033 - 45879993
Alignment:
Q  103 gctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||| ||| ||||||||||| ||||||||||||||||||||    
T  45880033 gctcgttttattgcgctaacatttgaaaattatgaacggtg 45879993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 42057085 - 42057209
Alignment:
Q  16 acttgaaaaattttgacatctnnnnnnnncttgatttttatagtcttttaaatctttatacatgactagcgatgtgcccgtcttttcgctcttttaattg 115  Q
    |||||||| ||||||||||||        ||||||||||| | ||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||    
T  42057085 acttgaaacattttgacatctaaaaaaaacttgatttttacaatcttttaaatctttatacatgactagcg---tgcccgtcttttcgctctttttattg 42057181  T
Q  116 cgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||||||||||||||||||||||    
T  42057182 cgctaacgtttgaaaattatgaacggtg 42057209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 9191988 - 9192042
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||    
T  9191988 gtgcccgtcttttggctcattttattgcgctaacgtttgaaaattatgaacggtg 9192042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 41014519 - 41014472
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  41014519 tctttccgctctttttattgcgctaacgtttgaaaattatgaacggtg 41014472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 15265820 - 15265766
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||    
T  15265820 gtgcccgtctttccgctctttttattacgctaacgtttgaaaattatgagcggtg 15265766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 41633427 - 41633373
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||    
T  41633427 gtgctcgtctttccgcactttttattgcgctaacgtttgaaaattatgaacggtg 41633373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 13450401 - 13450352
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    |||||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  13450401 gtgcccgtctttccgctctttttattgcgctaatgtttgaaaattatgaa 13450352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 44019864 - 44019917
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    |||||||||||| ||||||||| ||||||| |||||||||||||||| ||||||    
T  44019864 gtgcccgtctttccgctctttttattgcgccaacgtttgaaaattattaacggt 44019917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 8875285 - 8875331
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattat 135  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  8875285 gtgcccgtctttccgctctttttattgcgctaacatttgaaaattat 8875331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 13594086 - 13594127
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaattat 135  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  13594086 cgtctttccgctctttttattgcgctaacgtttgaaaattat 13594127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 21839840 - 21839803
Alignment:
Q  102 cgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  21839840 cgctctttttattgcgctaacgtttgaaaattatgaac 21839803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 21885154 - 21885203
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    ||||||||||||  |||||||| ||||| |||||||||||||||||||||    
T  21885154 gtgcccgtctttctgctctttttattgctctaacgtttgaaaattatgaa 21885203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 27359860 - 27359905
Alignment:
Q  98 ttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||    
T  27359860 ttttcgctctttttattgcgctaacatttgaaaattattaacggtg 27359905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 34753452 - 34753399
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    ||||||||||||  |||||||| ||| |||||| ||||||||||||||||||||    
T  34753452 gtgcccgtctttctgctctttttattacgctaatgtttgaaaattatgaacggt 34753399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 14371640 - 14371597
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaa 130  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||    
T  14371640 atgtgctcgtcttttcactctttttattgcgctaacgtttgaaa 14371597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 17373896 - 17373853
Alignment:
Q  95 gtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||    
T  17373896 gtcttttcgctatttttattgcactaacgtttgaaaattatgaa 17373853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 20579287 - 20579322
Alignment:
Q  98 ttttcgctcttttaattgcgctaacgtttgaaaatt 133  Q
    ||||||||||||| ||||||||||||||||||||||    
T  20579287 ttttcgctctttttattgcgctaacgtttgaaaatt 20579322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 34063469 - 34063422
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||||||||| ||| ||||||||||| ||||||||| ||||||    
T  34063469 tcttttcgctctttttattacgctaacgtttcaaaattatgtacggtg 34063422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 42060229 - 42060279
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| || |||||| ||||||||||||||| |||||||| |||||||    
T  42060229 ccgtctttccgatctttttattgcgctaacgtttcaaaattattaacggtg 42060279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 9169992 - 9169947
Alignment:
Q  95 gtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||| | ||||||| ||||||||||||||| |||||||||||||    
T  9169992 gtctttccactctttttattgcgctaacgtttaaaaattatgaacg 9169947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 22277727 - 22277780
Alignment:
Q  90 tgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||||| |||| |||| |||||||||| | ||||||||| |||||||||    
T  22277727 tgcccgtctttccgctttttttattgcgctaaagattgaaaattttgaacggtg 22277780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 24004405 - 24004454
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    ||||| |||||| ||||||||| ||||||| |||||||||||||| ||||    
T  24004405 gtgcctgtctttccgctctttttattgcgccaacgtttgaaaattgtgaa 24004454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 33134359 - 33134404
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    |||||||| | ||||||| |||||||||| ||||||||||||||||    
T  33134359 ccgtctttccactctttttattgcgctaatgtttgaaaattatgaa 33134404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 45407242 - 45407197
Alignment:
Q  98 ttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||||||| ||||||||||  |||||||||||| |||||||    
T  45407242 ttttcgctctttttattgcgctaatatttgaaaattattaacggtg 45407197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 14706512 - 14706464
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattat 135  Q
    ||||| |||||||| ||||||||| ||||||||||||| || |||||||    
T  14706512 atgtgtccgtctttccgctctttttattgcgctaacgtgtgtaaattat 14706464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 24004934 - 24004966
Alignment:
Q  107 ttttaattgcgctaacgtttgaaaattatgaac 139  Q
    ||||||||||| |||||||||||||||||||||    
T  24004934 ttttaattgcgttaacgtttgaaaattatgaac 24004966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 25915055 - 25915095
Alignment:
Q  103 gctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||| | |||||||||||||||||||||||| |||||||    
T  25915055 gctcttattattgcgctaacgtttgaaaattataaacggtg 25915095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 29462938 - 29462882
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||| |||||||||||||||||  | ||| ||||| ||||||||||||||| ||||    
T  29462938 atgtgtccgtcttttcgctctttatagtgcactaacatttgaaaattatgaatggtg 29462882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 35916948 - 35916904
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    ||||| ||||||||| |||||| |||||||||||||||| |||||    
T  35916948 tctttccgctctttttattgcgttaacgtttgaaaattaggaacg 35916904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 36817354 - 36817386
Alignment:
Q  107 ttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||| ||||||||||||||||||||||||||||    
T  36817354 tttttattgcgctaacgtttgaaaattatgaac 36817386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 38147874 - 38147818
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||| |||||||| ||||| ||| |||||| |||| |||||||||||| |||||||    
T  38147874 atgtgtccgtctttccgctccttttattgcgttaacatttgaaaattattaacggtg 38147818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 936373 - 936320
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  936373 gtgcccgtctttccgctctttttattgcgctaacgtttgaaaattatgaacggt 936320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 35272279 - 35272229
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatga 137  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  35272279 atgtgcccatcttttcgctctttttattgcgctaacgtttgaaaattatga 35272229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 16313497 - 16313452
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  16313497 ccgtcttttcgctctttttattgcgctaacgtttgaaaattatgaa 16313452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 42506499 - 42506447
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  42506499 atgtgctcgtcttttcgctctttttattgcgctaacgtttgaaaatcatgaac 42506447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 9524141 - 9524091
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||||||||||    
T  9524141 gtgcctgtctttccgctctttttattgcgctaacgtttgaaaattatgaac 9524091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 14000717 - 14000663
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||| ||||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  14000717 gtgctcgtctttccgctctttttattgcgttaacgtttgaaaattatgaacggtg 14000663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 28766540 - 28766484
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||||||||| ||||||||| |||||  |||| ||||||||||||||||||||    
T  28766540 atgtgcccgtctttccgctctttttattgcattaacttttgaaaattatgaacggtg 28766484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 39956053 - 39956005
Alignment:
Q  95 gtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  39956053 gtctttccgctctttttattgcgctaacatttgaaaattatgaacggtg 39956005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 19929692 - 19929638
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||||||| ||||| ||| |||| | |||||||||||||||||||||||||    
T  19929692 gtgcccgtctttccgctcattttattgtgttaacgtttgaaaattatgaacggtg 19929638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 23270902 - 23270848
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||||||| ||||||||| |||||| ||| ||||||||||||| |||||||    
T  23270902 gtgcccgtctttccgctctttttattgcgttaaagtttgaaaattataaacggtg 23270848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 24836999 - 24836945
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||| ||||||| ||||||||| ||||||||||| ||| ||||||||||||||||    
T  24836999 gtgcacgtctttccgctctttttattgcgctaacttttaaaaattatgaacggtg 24836945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 28867406 - 28867452
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattat 135  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  28867406 gtgcccgtctttccgctctttttattgcgctaacctttgaaaattat 28867452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 834021 - 834070
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    ||||| |||||| ||||||||| |||||| ||||||||||||||||||||    
T  834021 gtgcctgtctttccgctctttttattgcgttaacgtttgaaaattatgaa 834070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 8231071 - 8231116
Alignment:
Q  98 ttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||| ||||||| |||| |||||||||||||||||||||||||||    
T  8231071 ttttcactctttttattgagctaacgtttgaaaattatgaacggtg 8231116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 31659631 - 31659582
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||| || |||||| |||||||||||||||||||| |||||||||||    
T  31659631 cgtctttccgttctttttattgcgctaacgtttgaaaaatatgaacggtg 31659582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 248825 - 248789
Alignment:
Q  107 ttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||| ||||||||||||||||||||||||||||||||    
T  248825 tttttattgcgctaacgtttgaaaattatgaacggtg 248789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 9514999 - 9514963
Alignment:
Q  104 ctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    ||||||| |||||||||||||||||||||||||||||    
T  9514999 ctctttttattgcgctaacgtttgaaaattatgaacg 9514963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 19018888 - 19018840
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattat 135  Q
    |||||||||||||| ||||||||| ||||| |||| |||||||||||||    
T  19018888 atgtgcccgtctttccgctctttttattgctctaatgtttgaaaattat 19018840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 19650887 - 19650851
Alignment:
Q  105 tcttttaattgcgctaacgtttgaaaattatgaacgg 141  Q
    |||||| ||||||||||||||||||||||||||||||    
T  19650887 tctttttattgcgctaacgtttgaaaattatgaacgg 19650851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 33168518 - 33168470
Alignment:
Q  95 gtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||| | ||||||| |||||| |||||||||||||||||||||||||    
T  33168518 gtctttccactctttttattgcgttaacgtttgaaaattatgaacggtg 33168470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 38455300 - 38455347
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||| ||||||||| ||||| ||||| ||||||||||||||||||||    
T  38455300 tctttccgctctttttattgcactaacatttgaaaattatgaacggtg 38455347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 1611834 - 1611880
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattat 135  Q
    ||||||||||||  |||||||| |||| |||||||||||||||||||    
T  1611834 gtgcccgtctttctgctctttttattgtgctaacgtttgaaaattat 1611880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 6062245 - 6062191
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||| |||||| |||| |||| ||| ||||||||||| ||||||||||||||||    
T  6062245 gtgcctgtctttccgctttttttattacgctaacgtttaaaaattatgaacggtg 6062191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 17014281 - 17014231
Alignment:
Q  92 cccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    ||||||||||| ||||||| || ||||||| ||||||||||||| ||||||    
T  17014281 cccgtcttttcactctttttatcgcgctaatgtttgaaaattataaacggt 17014231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 7937954 - 7937991
Alignment:
Q  101 tcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  7937954 tcgctctttttattgcgataacgtttgaaaattatgaa 7937991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 31180965 - 31181010
Alignment:
Q  90 tgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattat 135  Q
    ||||||||||| ||||||||| |||| | |||||||||||||||||    
T  31180965 tgcccgtctttccgctctttttattgagttaacgtttgaaaattat 31181010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 3295850 - 3295810
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaatta 134  Q
    ||||||| ||||||||| |||| ||||||||||||||||||    
T  3295850 cgtctttccgctctttttattgtgctaacgtttgaaaatta 3295810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 20176321 - 20176361
Alignment:
Q  103 gctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| ||||| ||||||||| ||||||||||||||||    
T  20176321 gctctttttattgccctaacgtttaaaaattatgaacggtg 20176361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 28868144 - 28868192
Alignment:
Q  95 gtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||| ||||||||| | |||||| |||||||||||||||||| ||||    
T  28868144 gtctttccgctctttttactgcgctgacgtttgaaaattatgaaaggtg 28868192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 15646954 - 15647005
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  15646954 gtgcccgtctttccgctctttttattgcgctaacgtttgaaaattatgaacg 15647005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 25617494 - 25617441
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  25617494 gtgcccgtcttt-cgctctttttattgcgctaacgtttgaaaattatgaacggtg 25617441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 39435220 - 39435170
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  39435220 gtgcccgtctttccgctctttttattgcgctaacgtttgaaaattatgaac 39435170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 21766028 - 21766077
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  21766028 cgtctttccgctctttttattgcgctaacgtttgaaaattatgaacggtg 21766077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 10199472 - 10199524
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||||||||||||| ||||||||| |||||||||| |||||||||||||||||    
T  10199472 atgtgcccgtctttccgctctttttattgcgctaaagtttgaaaattatgaac 10199524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 1787200 - 1787153
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||    
T  1787200 ccgtctttccgctcttttaattgcgttaacgtttgaaaattatgaacg 1787153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 5800493 - 5800443
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| ||||||||| |||||||||| |||||||||||||||||||||    
T  5800493 ccgtctttccgctctttttattgcgctaatgtttgaaaattatgaacggtg 5800443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 46759430 - 46759480
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  46759430 ccgtctttccgctctttttattgcgctaacgtttgaaaataatgaacggtg 46759480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 581594 - 581643
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    |||||||||||| |||| |||| |||||||||||||||||||||||||||    
T  581594 gtgcccgtctttccgctttttttattgcgctaacgtttgaaaattatgaa 581643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 10040653 - 10040600
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    ||||||||||||  |||||||| ||||||||||| |||||||||||||||||||    
T  10040653 gtgcccgtctttctgctctttttattgcgctaacatttgaaaattatgaacggt 10040600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 21635097 - 21635041
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||| ||||||| ||||||||| ||||||||||| |||||| |||||||||||||    
T  21635097 atgtgctcgtctttccgctctttttattgcgctaacatttgaatattatgaacggtg 21635041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 19008225 - 19008280
Alignment:
Q  88 tgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||||||| | || |||| ||||||||||||||||||||||| ||||||||    
T  19008225 tgtgcccgtctttccactatttttattgcgctaacgtttgaaaattaagaacggtg 19008280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 31176943 - 31176888
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    |||||||||||||||  ||||||| ||| |||||||||||||||||||| ||||||    
T  31176943 atgtgcccgtctttttactctttttattacgctaacgtttgaaaattattaacggt 31176888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 1303238 - 1303292
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| ||| ||||||||| |||||||| |||||||||||||||||| ||||    
T  1303238 gtgcccgtttttccgctctttttattgcgctgacgtttgaaaattatgaatggtg 1303292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 30240660 - 30240709
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||||||||||||| |||| ||||||| |||||||||||||||||||    
T  30240660 ccgtcttttcgctctttttattgtgctaacg-ttgaaaattatgaacggtg 30240709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 39389770 - 39389721
Alignment:
Q  90 tgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||||||||||| | ||||| ||||||||||||||||||||||||||||    
T  39389770 tgcccgtcttttcgttttttta-ttgcgctaacgtttgaaaattatgaacg 39389721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 4550557 - 4550508
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    |||||||| ||||||||| |||||  ||||||||||||||||||||||||    
T  4550557 ccgtctttccgctctttttattgccttaacgtttgaaaattatgaacggt 4550508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 47901976 - 47901927
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||| ||||||||| ||||||||||| ||| ||||||||||||||||    
T  47901976 cgtctttccgctctttttattgcgctaacatttaaaaattatgaacggtg 47901927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 581870 - 581918
Alignment:
Q  90 tgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    ||||||||||| |||| |||| ||||||| |||||||||||||||||||    
T  581870 tgcccgtctttccgctttttttattgcgccaacgtttgaaaattatgaa 581918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 20149294 - 20149350
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||| ||||||||| | ||||||| || || ||||||||||||||||||||||||||    
T  20149294 atgtacccgtctttccactctttttatcgcactaacgtttgaaaattatgaacggtg 20149350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 48109880 - 48109824
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||| ||||||||||| |||| |||| | ||| |||||||||||||||||||||    
T  48109880 atgtgcctgtcttttcgctgtttttattgtgttaatgtttgaaaattatgaacggtg 48109824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 19371969 - 19371922
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||| ||||||||| ||||||| ||||||| ||||||||||||||||    
T  19371969 tctttccgctctttttattgcgccaacgtttcaaaattatgaacggtg 19371922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 42963129 - 42963176
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||| ||||||||| ||||||||| | ||||||||||||||||||||    
T  42963129 tctttccgctctttttattgcgctagcatttgaaaattatgaacggtg 42963176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 9412939 - 9412893
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||||  |||||||| ||||||||| |||||||||||||||||||    
T  9412939 cgtctttctgctctttttattgcgctatcgtttgaaaattatgaacg 9412893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 22479838 - 22479801
Alignment:
Q  102 cgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  22479838 cgctctttttattgcgctaacatttgaaaattatgaac 22479801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 5757055 - 5757099
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    ||||||| |||||||||  |||| |||||||||||||||||||||    
T  5757055 cgtctttccgctctttttgttgcactaacgtttgaaaattatgaa 5757099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 8390603 - 8390551
Alignment:
Q  90 tgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    |||||||||||||  | ||||  ||||||||| ||||||||||||||||||||    
T  8390603 tgcccgtcttttcaattttttttttgcgctaatgtttgaaaattatgaacggt 8390551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 39466088 - 39466040
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattat 135  Q
    ||||||||||||||  |||||||| |||||| |||| ||||||||||||    
T  39466088 atgtgcccgtctttctgctctttttattgcgttaacttttgaaaattat 39466040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 40356243 - 40356203
Alignment:
Q  103 gctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| | |||||||| |||||||||||||||||||||    
T  40356243 gctctttttactgcgctaaagtttgaaaattatgaacggtg 40356203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 4430033 - 4430087
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  4430033 gtgctcgtcttttcgctctttttattgtgctaacgtttgaaaattatgaacggtg 4430087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 38804478 - 38804528
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatga 137  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  38804478 atgtgcccgtctttccgctctttttattgcgctaacgtttgaaaattatga 38804528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 11938059 - 11938017
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattat 135  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  11938059 ccgtcttttcgctctttttattgcgctaacgtttgaaaattat 11938017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 18994563 - 18994617
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||||||| ||||||||| |||||||  |||||||||||||||||||||||    
T  18994563 gtgcccgtctttccgctctttttattgcgccgacgtttgaaaattatgaacggtg 18994617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 5918886 - 5918833
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    |||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  5918886 gtgctcgtctttccgctctttttattgcgctaacgtttgaaaattattaacggt 5918833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 26784907 - 26784856
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||||||||| ||||||||| ||||| |||| ||||||||||||||||||    
T  26784907 gtgcccgtctttccgctctttttattgctctaatgtttgaaaattatgaacg 26784856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 1759469 - 1759519
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||| | ||||||||| ||||||||||||||||||||||| ||||||||    
T  1759469 ccgtctctccgctctttttattgcgctaacgtttgaaaattaagaacggtg 1759519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 11916124 - 11916174
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||||||||||||||||||||| ||| || |||||||||||||| ||||||    
T  11916124 gtgcccgtcttttcgctctttttattacgttaacgtttgaaaatgatgaac 11916174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 13150191 - 13150141
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| |||||||    
T  13150191 ccgtctttccgctctttttattgcgttaacgtttgaaaattattaacggtg 13150141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 15044121 - 15044160
Alignment:
Q  103 gctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  15044121 gctctttta-ttgcgctaacgtttgaaaattatgaacggtg 15044160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 15916926 - 15916970
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||||    
T  15916926 tctttccgctctttttattccgctaacgtttgaaaattatgaacg 15916970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 18279191 - 18279233
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattat 135  Q
    |||| ||||||||||||| |||||| |||||||||||||||||    
T  18279191 ccgtgttttcgctctttttattgcgttaacgtttgaaaattat 18279233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 27837799 - 27837753
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||||| | ||||||||| ||||||||| ||||||||||||||||||    
T  27837799 ccgtctctccgctctttttattgcgctagcgtttgaaaattatgaac 27837753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 3825448 - 3825395
Alignment:
Q  88 tgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacgg 141  Q
    ||||||| ||||| || |||||| |||||| |||||||| ||||||||||||||    
T  3825448 tgtgcccatctttccgttctttttattgcgttaacgtttaaaaattatgaacgg 3825395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 5625967 - 5626015
Alignment:
Q  90 tgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    ||||||||||| |||| |||| ||| |||||||||||||||| ||||||    
T  5625967 tgcccgtctttccgctatttttattacgctaacgtttgaaaactatgaa 5626015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 12838823 - 12838771
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    ||||| |||||||| | ||||||| |||||| ||| |||||||||||||||||    
T  12838823 atgtgtccgtctttcctctctttttattgcgttaatgtttgaaaattatgaac 12838771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 14436503 - 14436539
Alignment:
Q  107 ttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||||||||||||||| | |||||||||||||    
T  14436503 ttttaattgcgctaacgtttgcatattatgaacggtg 14436539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 15899011 - 15898963
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacgg 141  Q
    |||||||| |||||||||  |||| |||||||||||||||||| |||||    
T  15899011 ccgtctttccgctctttttgttgcactaacgtttgaaaattataaacgg 15898963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 15597593 - 15597531
Alignment:
Q  80 actagcgatgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    ||||| |||||||||||||||||||| |||| | ||||||||| |||||||||||||||||||    
T  15597593 actagtgatgtgcccgtcttttcgctatttttagtgcgctaacttttgaaaattatgaacggt 15597531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 34011037 - 34011090
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    |||||||||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  34011037 gtgcccgtctttccgctctttttattgcactaacgtttgaaaattatgaacggt 34011090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 5880743 - 5880790
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||    
T  5880743 ccgtcttttcgctctttttattgcgttaacgtttgaaaattatgaacg 5880790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 10729246 - 10729300
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||| ||||||| ||||||||| |||||||||||||||| |||||||||||||||    
T  10729246 gtgcacgtctttccgctctttttattgcgctaacgtttggaaattatgaacggtg 10729300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 11842800 - 11842850
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  11842800 ccgtctttccgctctttttattgcgttaacgtttgaaaattatgaacggtg 11842850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 37705670 - 37705710
Alignment:
Q  103 gctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  37705670 gctctttttattgcgctaacgtttgaaaattatgaacggtg 37705710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 5965569 - 5965620
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    ||||||||||||  |||||||| ||||| |||||||||||||||||||||||    
T  5965569 gtgcccgtctttctgctctttttattgctctaacgtttgaaaattatgaacg 5965620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 15470712 - 15470661
Alignment:
Q  92 cccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||| ||||||||| |||||||||||||||||||| |||||| ||||    
T  15470712 cccgtctttccgctctttttattgcgctaacgtttgaaaactatgaatggtg 15470661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 27926694 - 27926631
Alignment:
Q  80 actagcgatgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| ||||||||||||| |||||||| |||  ||||| ||||||| |||||||||||||    
T  27926694 actagcgacgtgcccgtctttttgctctttttattttgctaatgtttgaagattatgaacggtg 27926631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 26342847 - 26342901
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||| | ||||||||||||| ||| |||||| |||||||||||||||||||||    
T  26342847 gtgcccattttttcgctctttttattacgctaaagtttgaaaattatgaacggtg 26342901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 46880263 - 46880213
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||||    
T  46880263 ccgtctttccgctctttttattgcattaacgtttgaaaattatgaacggtg 46880213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 650142 - 650187
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaat 132  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||||    
T  650142 atgtgcccgtctttccgctctttttattgcgctaacatttgaaaat 650187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 50944450 - 50944503
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||||||||||  |||| |||| ||||| |||||||||||||||||||||||    
T  50944450 atgtgcccgtcttaccgctttttttattgcactaacgtttgaaaattatgaacg 50944503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 4968856 - 4968892
Alignment:
Q  107 ttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||| ||||||||||||||||||||||||||||||||    
T  4968856 tttttattgcgctaacgtttgaaaattatgaacggtg 4968892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 9971927 - 9971887
Alignment:
Q  90 tgcccgtcttttcgctcttttaattgcgctaacgtttgaaa 130  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  9971927 tgcccatcttttcgctctttttattgcgctaacgtttgaaa 9971887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 34749070 - 34749026
Alignment:
Q  90 tgcccgtcttttcgctcttttaattgcgctaacgtttgaaaatta 134  Q
    ||||||||||| | ||||||| |||||||||||||||||||||||    
T  34749070 tgcccgtctttccactctttttattgcgctaacgtttgaaaatta 34749026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 44921755 - 44921795
Alignment:
Q  102 cgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  44921755 cgctctttttattgcggtaacgtttgaaaattatgaacggt 44921795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 49162967 - 49162919
Alignment:
Q  91 gcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||| ||||| ||||||||| ||||| ||||||||||||||||||||||    
T  49162967 gcccctctttccgctctttttattgcactaacgtttgaaaattatgaac 49162919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 33933961 - 33934008
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||| ||||||||| ||||||||||| ||| ||||||||||||||||    
T  33933961 tctttccgctctttttattgcgctaacatttaaaaattatgaacggtg 33934008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 40368256 - 40368202
Alignment:
Q  88 tgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||||||| |||||||||| |||||||||| |||| |||||||||| ||||    
T  40368256 tgtgcccgtctttccgctctttta-ttgcgctaacatttgtaaattatgaaaggtg 40368202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 1531071 - 1531121
Alignment:
Q  89 gtgcccgtcttttcgctctttta-attgcgctaacgtttgaaaattatgaa 138  Q
    |||||||||||| | |||||||  |||||||||||||||||||||||||||    
T  1531071 gtgcccgtctttccactcttttttattgcgctaacgtttgaaaattatgaa 1531121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 1581027 - 1581069
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattat 135  Q
    |||||||| ||||||||| |||||||||| |||||||||||||    
T  1581027 ccgtctttccgctctttttattgcgctaaagtttgaaaattat 1581069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 8574293 - 8574243
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||||| ||||||  ||||| ||||||||||||||||||| ||||||    
T  8574293 ccgtcttttcactctttatattgcactaacgtttgaaaattatgcacggtg 8574243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 15476670 - 15476624
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    ||||||| || || ||| |||||||||||||||||||||||||||||    
T  15476670 cgtctttccgttcattttattgcgctaacgtttgaaaattatgaacg 15476624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 20907002 - 20906968
Alignment:
Q  103 gctcttttaattgcgctaacgtttgaaaattatga 137  Q
    |||||||| ||||||||||||||||||||||||||    
T  20907002 gctctttttattgcgctaacgtttgaaaattatga 20906968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 27307624 - 27307662
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaa 131  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  27307624 ccgtctttccgctctttttattgcgctaacgtttgaaaa 27307662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 43723708 - 43723750
Alignment:
Q  98 ttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    ||||||||||||| ||||| | |||||||||||||||||||||    
T  43723708 ttttcgctctttttattgcaccaacgtttgaaaattatgaacg 43723750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 47402461 - 47402511
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    ||||| |||||| | ||||||| |||||| |||||||||||||||||||||    
T  47402461 gtgcctgtctttccactctttttattgcggtaacgtttgaaaattatgaac 47402511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 11345182 - 11345133
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||| ||||||||| |||||  |||||||| ||||||||||||||||    
T  11345182 cgtctttccgctctttttattgcagtaacgtttaaaaattatgaacggtg 11345133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 12780474 - 12780433
Alignment:
Q  97 cttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    |||||||||||||| |||| ||||| ||||||||||||||||    
T  12780474 cttttcgctctttttattgtgctaaggtttgaaaattatgaa 12780433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 16424729 - 16424684
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||||||  ||| |||| ||||||||||||||||||||||||||||    
T  16424729 cgtctttcagctatttttattgcgctaacgtttgaaaattatgaac 16424684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 25821962 - 25822007
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    ||||||||||  | |||| |||||||||||||||||||||||||||    
T  25821962 ccgtcttttcattttttttattgcgctaacgtttgaaaattatgaa 25822007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 44648479 - 44648438
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaatta 134  Q
    |||||||| ||||||||| |||| ||||||||||||||||||    
T  44648479 ccgtctttccgctctttttattgtgctaacgtttgaaaatta 44648438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 44668017 - 44667964
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    ||||| |||||||| || |||||| ||||| ||||||||| |||||||||||||    
T  44668017 atgtgtccgtctttccgttctttttattgcactaacgtttaaaaattatgaacg 44667964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 2666419 - 2666375
Alignment:
Q  95 gtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||||| | ||||||| |||||| |||||||||||||||||||||    
T  2666419 gtctttccactctttttattgcgataacgtttgaaaattatgaac 2666375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 4242311 - 4242263
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacgg 141  Q
    |||||||| ||||||||| |||  ||||||||||||||||||| |||||    
T  4242311 ccgtctttccgctctttttattatgctaacgtttgaaaattattaacgg 4242263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 9822501 - 9822457
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    ||||||| ||||| ||| ||||||||||||||| |||||||||||    
T  9822501 cgtctttccgctcattttattgcgctaacgtttaaaaattatgaa 9822457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 11409225 - 11409177
Alignment:
Q  95 gtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||| ||||||||| |||||| ||| |||||||||||||||| ||||    
T  11409225 gtctttccgctctttttattgcgataaagtttgaaaattatgaatggtg 11409177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 23655233 - 23655273
Alignment:
Q  102 cgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    |||||||||||||||| |||||||| |||||||| ||||||    
T  23655233 cgctcttttaattgcgttaacgtttaaaaattataaacggt 23655273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 24004843 - 24004899
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||| |||||| ||||  ||| ||||||||||| ||||||||||||||| ||||    
T  24004843 atgtgcctgtctttccgcttattttattgcgctaacttttgaaaattatgaatggtg 24004899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 40808574 - 40808622
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatga 137  Q
    |||||| | |||||| |||||| ||| ||||||||||||||||||||||    
T  40808574 gtgcccattttttcgttctttttattacgctaacgtttgaaaattatga 40808622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 50946020 - 50946052
Alignment:
Q  107 ttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||| ||||||||||||||||||||||||||||    
T  50946020 tttttattgcgctaacgtttgaaaattatgaac 50946052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 20702772 - 20702719
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  20702772 gtgcccgtctttccgctctttttattgcgctaacgtttgaaaattattaacggt 20702719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 5720230 - 5720286
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||| ||||||||||| ||||||| |||||| |||||||||||||||||||||||||    
T  5720230 atgttcccgtcttttcactctttttattgcgttaacgtttgaaaattatgaacggtg 5720286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 17702706 - 17702659
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  17702706 tctttccgctctttttattgcgctaacgtttgaaaattatgaacggtg 17702659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 23091131 - 23091187
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||||||||| ||||||||| |||||| || |||||||||||||||| |||||    
T  23091131 atgtgcccgtctttccgctctttttattgcgttaccgtttgaaaattatgagcggtg 23091187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 161051 - 161001
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| ||||||||| ||| |||||| |||||||||||||||||||||    
T  161051 ccgtctttccgctctttttattacgctaatgtttgaaaattatgaacggtg 161001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 669875 - 669829
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  669875 tctttccgctctttttattgcactaacgtttgaaaattatgaacggt 669829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 37143614 - 37143660
Alignment:
Q  92 cccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    ||||||||| |||| |||| |||||||||||||||||||||||||||    
T  37143614 cccgtctttccgctttttttattgcgctaacgtttgaaaattatgaa 37143660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 5190674 - 5190629
Alignment:
Q  95 gtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||    
T  5190674 gtctttccgctctttttattgcgctaacatttgaaaattatgaacg 5190629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 7438071 - 7438124
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    |||||||||||| |||| |||| ||| |||||||||||| ||||||||||||||    
T  7438071 gtgcccgtctttccgctatttttattacgctaacgtttgtaaattatgaacggt 7438124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 5499255 - 5499199
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| ||| | | ||||||| ||||| ||||||||||||||||||||||||||    
T  5499255 atgtgcccatctctccactctttttattgctctaacgtttgaaaattatgaacggtg 5499199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 17702387 - 17702435
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattat 135  Q
    |||||||| ||||| ||||||||| | ||||||||||||||||||||||    
T  17702387 atgtgcccctctttccgctctttttactgcgctaacgtttgaaaattat 17702435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 26088971 - 26088916
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||||||||| | ||||||| ||| |||||| |||||||||||||||||||||    
T  26088971 atgtgcccgtctttccactctttttatt-cgctaaagtttgaaaattatgaacggtg 26088916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 11064306 - 11064357
Alignment:
Q  92 cccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||||| || |||| ||||||||||| ||||||||||||||| ||||    
T  11064306 cccgtcttttcactttttttattgcgctaacatttgaaaattatgaatggtg 11064357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 35519316 - 35519269
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||||| ||||||||| |||| | ||||||||||||||||||||||    
T  35519316 ccgtctttccgctctttttattgtgttaacgtttgaaaattatgaacg 35519269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 37143138 - 37143185
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||  |||||| |||||| |||||||||||||||||||||||||    
T  37143138 tcttttcaatctttttattgcgttaacgtttgaaaattatgaacggtg 37143185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 35034636 - 35034685
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| |||| ||||| |||||| ||||||||||||||||||||||||    
T  35034636 ccgtctttccgctttttta-ttgcgcgaacgtttgaaaattatgaacggtg 35034685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 23986111 - 23986160
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    |||||||||||  || |||||| |||| ||||||||||||||||||||||    
T  23986111 gtgcccgtcttcccgatctttttattgagctaacgtttgaaaattatgaa 23986160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 35447490 - 35447543
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||| ||||||||| ||||||||| |||| ||||| |||| |||||||||||||    
T  35447490 atgttcccgtctttccgctctttttattgtgctaaggtttaaaaattatgaacg 35447543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 10128671 - 10128619
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    ||||| |||| ||| ||||||||| |||||||||||||| |||||||| ||||    
T  10128671 atgtgtccgtatttccgctctttttattgcgctaacgttcgaaaattacgaac 10128619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 15849795 - 15849755
Alignment:
Q  95 gtcttttcgctcttttaattgcgctaacgtttgaaaattat 135  Q
    |||||| ||||||||| |||| |||||||||||||||||||    
T  15849795 gtctttccgctctttttattgggctaacgtttgaaaattat 15849755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 21122468 - 21122420
Alignment:
Q  95 gtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||| ||||||||| ||| ||  ||||||||||||||||||||||||    
T  21122468 gtctttccgctctttttattacgtcaacgtttgaaaattatgaacggtg 21122420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 34659471 - 34659435
Alignment:
Q  107 ttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  34659471 tttttattgcgctaacgtttgataattatgaacggtg 34659435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 37013133 - 37013173
Alignment:
Q  103 gctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||||| |||| ||||| |||||||||||||||||||||    
T  37013133 gctctttttattgtgctaaagtttgaaaattatgaacggtg 37013173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 196 - 244
Alignment:
Q  92 cccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||    
T  196 cccgtcttttcgctcttttttttgcgctaacgtttgaaaattatgaacg 244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 33573711 - 33573663
Alignment:
Q  92 cccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||    
T  33573711 cccgtcttttcgctcttttttttgcgctaacgtttgaaaattatgaacg 33573663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 32531361 - 32531312
Alignment:
Q  94 cgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  32531361 cgtctttccgctctttttattgcgctaacgtttgaaaattattaacggtg 32531312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 9894247 - 9894295
Alignment:
Q  92 cccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||||||||    
T  9894247 cccgtcttttcactctttttattgcactaacgtttgaaaattatgaacg 9894295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 10587700 - 10587658
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    ||||||||||||||| ||||||| |||||||||||||||||||    
T  10587700 tcttttcgctctttttattgcgccaacgtttgaaaattatgaa 10587658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 12169696 - 12169746
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||||||||||| ||||||||| |||||| ||| |||||||||||||||||    
T  12169696 gtgcccgtctttccgctctttttattgcgttaatgtttgaaaattatgaac 12169746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 24062859 - 24062809
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||||||| ||| ||||||||| |||||||| |||||||||||||||||||    
T  24062859 gtgcccgtttttccgctctttttattgcgctgacgtttgaaaattatgaac 24062809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 21104810 - 21104758
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    ||||| |||||||||||| ||||| |||| |||||||||||||| ||||||||    
T  21104810 atgtgtccgtcttttcgcactttttattgtgctaacgtttgaaagttatgaac 21104758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 4996722 - 4996777
Alignment:
Q  88 tgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||| ||  || |||||| ||||| ||||||||||||||||||||||||||    
T  4996722 tgtgcccgttttaccgttcttttcattgcactaacgtttgaaaattatgaacggtg 4996777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 10343228 - 10343267
Alignment:
Q  96 tcttttcgctcttttaattgcgctaacgtttgaaaattat 135  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  10343228 tcttttcgctctttttattgcgctaatgtttgaaaattat 10343267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 17264197 - 17264146
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||||||||| ||||||||| ||| | |||||||||||||||||| ||||    
T  17264197 gtgcccgtctttccgctctttttattacactaacgtttgaaaattattaacg 17264146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 143
Target Start/End: Original strand, 22534902 - 22534933
Alignment:
Q  112 attgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||||||||||||||||||||||||||    
T  22534902 attgcgctaacgtttgaaaattatgaacggtg 22534933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 26251765 - 26251816
Alignment:
Q  88 tgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||| ||||||||  | |||||| ||||||||||||||||||||||||||||    
T  26251765 tgtgtccgtctttctgttctttttattgcgctaacgtttgaaaattatgaac 26251816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 28592909 - 28592858
Alignment:
Q  92 cccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||||||| ||||||||| |||||||||| | |||||||||||||| ||||    
T  28592909 cccgtctttccgctctttttattgcgctaatggttgaaaattatgaatggtg 28592858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 1212093 - 1212059
Alignment:
Q  98 ttttcgctcttttaattgcgctaacgtttgaaaat 132  Q
    ||||||||||||| |||||||||||||||||||||    
T  1212093 ttttcgctctttttattgcgctaacgtttgaaaat 1212059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 1190765 - 1190713
Alignment:
Q  90 tgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||| |||||| ||||||||| |||| ||||||||||| |||||||||||||||    
T  1190765 tgcctgtctttccgctctttttattgtgctaacgtttg-aaattatgaacggtg 1190713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 5442438 - 5442479
Alignment:
Q  99 tttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    |||||||||||| |||| ||||||||||||||||||| ||||    
T  5442438 tttcgctctttttattgtgctaacgtttgaaaattataaacg 5442479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 6874952 - 6874993
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaatta 134  Q
    |||||||||| ||||||| ||||||||||||||| |||||||    
T  6874952 ccgtcttttctctctttttattgcgctaacgtttaaaaatta 6874993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 2441683 - 2441635
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacgg 141  Q
    ||||||||||| | |||| |||||| |||| ||||||||||||||||||    
T  2441683 ccgtcttttcgatttttttattgcgttaacatttgaaaattatgaacgg 2441635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 32349216 - 32349256
Alignment:
Q  98 ttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    ||||| |||| || |||||||||||||||||||||||||||    
T  32349216 ttttctctctctttattgcgctaacgtttgaaaattatgaa 32349256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 18732 - 18683
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    |||||||||||| ||||||||| ||||||||||||||| |||||||||||    
T  18732 gtgcccgtctttccgctctttttattgcgctaacgtttaaaaattatgaa 18683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 2750 - 2701
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaa 138  Q
    |||||||||||| ||||||||| ||||||||||||||| |||||||||||    
T  2750 gtgcccgtctttccgctctttttattgcgctaacgtttaaaaattatgaa 2701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 57439 - 57490
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    ||||||||||||  ||| |||| |||||||||||||||||||||||||||||    
T  57439 gtgcccgtctttctgctatttttattgcgctaacgtttgaaaattatgaacg 57490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 21453 - 21407
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaac 139  Q
    |||||||| ||||||||| |||||||||| |||||||||||||||||    
T  21453 ccgtctttccgctctttttattgcgctaaagtttgaaaattatgaac 21407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 30666 - 30720
Alignment:
Q  89 gtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    ||||| |||||||||||||||| ||||||||||| || ||||||| |||||||||    
T  30666 gtgcctgtcttttcgctctttttattgcgctaactttagaaaattttgaacggtg 30720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 8249 - 8302
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    ||||| |||||||| ||||||||| ||| ||||||||||| |||||||||||||    
T  8249 atgtgtccgtctttccgctctttttattacgctaacgtttaaaaattatgaacg 8302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 61592 - 61544
Alignment:
Q  92 cccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacg 140  Q
    ||||||||| |||| ||||||||||| |||| |||||||||||||||||    
T  61592 cccgtctttacgcttttttaattgcgttaacatttgaaaattatgaacg 61544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 1483 - 1538
Alignment:
Q  87 atgtgcccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggt 142  Q
    ||||||||||||||  ||| |||| |||||  ||||||||||||||||||||||||    
T  1483 atgtgcccgtctttctgctttttttattgcattaacgtttgaaaattatgaacggt 1538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 13255 - 13221
Alignment:
Q  98 ttttcgctcttttaattgcgctaacgtttgaaaat 132  Q
    ||||||||||||| |||||||||||||||||||||    
T  13255 ttttcgctctttttattgcgctaacgtttgaaaat 13221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 1783 - 1735
Alignment:
Q  93 ccgtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacgg 141  Q
    ||||||||| | |||||| |||||| |||||||| ||||||||||||||    
T  1783 ccgtctttttgttctttttattgcgttaacgtttaaaaattatgaacgg 1735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 254743 - 254695
Alignment:
Q  95 gtcttttcgctcttttaattgcgctaacgtttgaaaattatgaacggtg 143  Q
    |||||| | ||||||| ||||| |||||||||||| |||||||||||||    
T  254743 gtctttccactctttttattgcactaacgtttgaagattatgaacggtg 254695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University