View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_high_87 (Length: 239)
Name: NF5866_high_87
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_high_87 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 41548155 - 41547933
Alignment:
| Q |
17 |
acaaacctataagtgttgccttggtcctatgcattgacataacattttcaaaaagtatccacaatattactaagtggaatgacctacnnnnnnnggtaca |
116 |
Q |
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| T |
41548155 |
acaaacctataagtgttgccttggtcctatgcattgacataacattttcaaaaagtatccacaatattaccaagtggaatgacctacaaaaaaaggtaca |
41548056 |
T |
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| Q |
117 |
tgaaaatgatgaacttagttataggaaaaacttgttcacaaaattttggctacattataannnnnnnnaccttggagttccaacagcattgaggagtgta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
41548055 |
tgaaaatgatgaacttagttataggaaaaacttgttcacaaaattttggctgcattataattttttttaccttggagttccaacagcattgaggagtgta |
41547956 |
T |
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| Q |
217 |
ataatacaaggtatatagacagc |
239 |
Q |
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| T |
41547955 |
ataatacaaggtatatagacagc |
41547933 |
T |
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