View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_high_89 (Length: 236)
Name: NF5866_high_89
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_high_89 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4445656 - 4445435
Alignment:
| Q |
1 |
cactattaatatcttcaaatcctaccacatataaataaattaaagaagaatgttagcagataaattaacctcctatatgtaccattacctaaaaaggatg |
100 |
Q |
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| T |
4445656 |
cactattaatatcttcaaatcctaccacatataaataaattaaagaagaatgttagcagataaattaacctcctatatgtactattacctaaaaaggatg |
4445557 |
T |
|
| Q |
101 |
ttaaaatgta-nnnnnnnnaaaataacaattacaaaccatattttttatgtgcttgaaccatattggctaggggtccatatatgtcaatgtaatagagct |
199 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4445556 |
ttaaaatgtattttttttttaaataacaattacaaaccatattttttatgtgcttgaaccatattggctaggggtccatatatgtcaatgtaatagagct |
4445457 |
T |
|
| Q |
200 |
taacatttggattagatgattt |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
4445456 |
taacatttggattagatgattt |
4445435 |
T |
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