View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_11 (Length: 577)
Name: NF5866_low_11
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 40470569 - 40470843
Alignment:
| Q |
1 |
ctgatactgtcacttcatttgattgattctcatttttcctaaagaatgagaaacttttaacataagttatcctttaattaaaaatttatcatgacaaatt |
100 |
Q |
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| T |
40470569 |
ctgatactgccacttcatttgattgattctcatttttcctaaagaatgagaaacttttaacataagttatcctttaattaaaaatttatcatgacaaatt |
40470668 |
T |
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| Q |
101 |
agttagttacctcaaaaattataattactaatatgttactgtatggacaatgcacaaacttaattgacttaatgcggaagaaatcatgtcacaaataacc |
200 |
Q |
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| T |
40470669 |
agttagttacctcaaaaattataattactaatatgttactgtatagacaatgcacaaacttaattgacttaatgtggaagaaattatgtcacaaataacc |
40470768 |
T |
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| Q |
201 |
aatgatttaaaataaaaactcagaaaagggattgaatcaatgaaacatccgaatcatggttgaactggatgacac |
275 |
Q |
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| T |
40470769 |
aatgatttaaaataaaaactcagacaagagattgaatcaatgaaacatccgaatcatggttgaactggatgacac |
40470843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 313 - 571
Target Start/End: Original strand, 40470881 - 40471147
Alignment:
| Q |
313 |
ctggttcaactctattttaatctgcttcaaccagactatagcataactggaatgaaaccaaccaacgaactggctggttcacagttgaagctgtcttttt |
412 |
Q |
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| T |
40470881 |
ctggttcaactctattttaatctgcttcaacctgactatagtataaccggaatgaaaccaaccaacgaactggctggttcacagttgaagctgtcttttt |
40470980 |
T |
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| Q |
413 |
gatccagtttttaataaaacattgcaaataatatgaagttatatattgcaaactcatgaagctattatgtataaacttcaggctatagatttagt----- |
507 |
Q |
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| T |
40470981 |
gatccagtttt---taaaacattgcaaattatatgaagttatatattgcaaactcatgaagctattatgtataaacttcaggctatagatttagtaaaaa |
40471077 |
T |
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| Q |
508 |
------nnnnnnnnnnntcaccttcttttacttctagagtcatcttcctctgcctcaaatcctttgcttc |
571 |
Q |
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| T |
40471078 |
aaaaagaaagaaaaaaatcaccttcttttacttctagagtcatcttcctctgcctcaaatcctttgcttc |
40471147 |
T |
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