View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_13 (Length: 520)
Name: NF5866_low_13
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 262 - 520
Target Start/End: Complemental strand, 31828429 - 31828171
Alignment:
| Q |
262 |
tgcatatgaatttgaagtaaaaccaattagcattattactacaaaacaaaccttgcttttcttcaagttatcatctctcattgttgatacagcttcatat |
361 |
Q |
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| T |
31828429 |
tgcatatgaatttgaagtaaaaccaattagcattattactacaaaacaaaccttgcttttcttcaagttatcatctctcattgttgatacagcttcatat |
31828330 |
T |
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| Q |
362 |
agattttgtttcttcaatctaatatagttttttgtgttgaaacaatgaagttggttgcttcaagaagggttaaagttgaaaaagcagagaatgagatgaa |
461 |
Q |
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| T |
31828329 |
agattttgtttcttcaatctaatatagttttttgtgttgaaacaatgaagttggttgcttcaagaagggttaaagttgaaaaagtagagaatgagatgaa |
31828230 |
T |
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| Q |
462 |
agtacaagtaataaaaacaacccttataatacgggttttttctgttgaattctctctct |
520 |
Q |
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| T |
31828229 |
agtacaagtaataaaaacaacccttataatacgggttttttctgttgaattctctctct |
31828171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 31828660 - 31828476
Alignment:
| Q |
16 |
gttttgagtgaaacctcagattgcaaatctaataggctttaattaaacagttaattacataattaactacattaaattgagtaatcacctccataaagaa |
115 |
Q |
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| T |
31828660 |
gttttgagtgaaacctcagattgcaaatctaataggctttaattaaacagttaattacataattaactacattaaattgagtaatcacctccataaagaa |
31828561 |
T |
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| Q |
116 |
catcatcatccgcttgaaagtcttcatttttactcttgatattaaaccatttcttgaccaaagttttgggccatgaaagcttcag |
200 |
Q |
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| T |
31828560 |
catcatcatccgcttgaaagtcttcatttttactcttgatattaaaccatttcttgaccaaagttttgggccatgaaagcttcag |
31828476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 38124245 - 38124325
Alignment:
| Q |
119 |
catcatccgcttgaaagtcttcatttttactcttgatattaaaccatttcttgaccaaagttttgggccatgaaagcttca |
199 |
Q |
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| T |
38124245 |
catcatctgcttgaaagtcttgagatttggtcttgatattgaaccattttttgaccaatgtttttggccatgaaagcttca |
38124325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 38124421 - 38124465
Alignment:
| Q |
318 |
ttttcttcaagttatcatctctcattgttgatacagcttcatata |
362 |
Q |
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| T |
38124421 |
ttttcttcaagttttcatctctcattgttgagaaaacttcatata |
38124465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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