View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5866_low_16 (Length: 495)

Name: NF5866_low_16
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5866_low_16
NF5866_low_16
[»] chr5 (10 HSPs)
chr5 (10-479)||(22787410-22787880)
chr5 (10-99)||(13573078-13573167)
chr5 (17-106)||(42763653-42763742)
chr5 (278-425)||(12809500-12809647)
chr5 (203-342)||(26679249-26679388)
chr5 (203-342)||(26950856-26950995)
chr5 (11-109)||(19233939-19234037)
chr5 (295-357)||(22291025-22291087)
chr5 (17-105)||(8723072-8723160)
chr5 (377-425)||(12746416-12746464)
[»] chr3 (15 HSPs)
chr3 (10-472)||(54562882-54563345)
chr3 (10-418)||(44493480-44493888)
chr3 (14-409)||(12528007-12528402)
chr3 (10-417)||(19822332-19822739)
chr3 (14-213)||(14483831-14484030)
chr3 (17-105)||(15788405-15788493)
chr3 (247-357)||(6007464-6007574)
chr3 (333-423)||(14484153-14484243)
chr3 (247-357)||(17788753-17788863)
chr3 (247-357)||(19097195-19097305)
chr3 (10-183)||(49497742-49497915)
chr3 (248-306)||(4481388-4481446)
chr3 (53-175)||(4481519-4481641)
chr3 (247-357)||(31662420-31662530)
chr3 (247-355)||(31972082-31972190)
[»] scaffold0381 (1 HSPs)
scaffold0381 (14-423)||(8284-8690)
[»] chr4 (3 HSPs)
chr4 (14-423)||(27011096-27011502)
chr4 (247-357)||(30857963-30858073)
chr4 (247-357)||(55226213-55226323)
[»] chr8 (6 HSPs)
chr8 (10-222)||(36307620-36307832)
chr8 (247-408)||(13701891-13702052)
chr8 (74-213)||(13813229-13813368)
chr8 (53-123)||(9529772-9529842)
chr8 (247-357)||(14504322-14504432)
chr8 (247-372)||(15991823-15991948)
[»] chr1 (4 HSPs)
chr1 (10-222)||(38490485-38490697)
chr1 (201-344)||(17177365-17177508)
chr1 (38-168)||(2004190-2004320)
chr1 (11-177)||(41339249-41339415)
[»] chr7 (6 HSPs)
chr7 (11-306)||(8863716-8864011)
chr7 (11-175)||(29960838-29961004)
chr7 (11-100)||(48768385-48768474)
chr7 (162-293)||(17207652-17207783)
chr7 (51-90)||(44674084-44674123)
chr7 (10-108)||(6559841-6559939)
[»] chr2 (4 HSPs)
chr2 (11-192)||(45013604-45013785)
chr2 (11-192)||(11551703-11551884)
chr2 (17-105)||(20469550-20469638)
chr2 (53-106)||(27070772-27070825)
[»] chr6 (3 HSPs)
chr6 (11-177)||(11605787-11605953)
chr6 (10-105)||(26905878-26905973)
chr6 (11-60)||(20928462-20928511)


Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 10 - 479
Target Start/End: Complemental strand, 22787880 - 22787410
Alignment:
Q  10 taattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22787880 taattcttggagtagtaagtgcctatctaaggcaggacgtgaagttacgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcaa 22787781  T
Q  110 ctaccgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaaccactcatagaggtataacttggttgagttgag 209  Q
    ||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22787780 ctatcgtccacgtttattacctctatcgacagaatgattaattcattttggtggggtcatggcagaaccactcatagaggtataacttggttgagttggg 22787681  T
Q  210 aaaaactatcgattcataaaactcagaggggtttggatttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaac 309  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22787680 aaaaactatcgattcataaaactcagaggggtttgggtttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatgaaaatttctaac 22787581  T
Q  310 agaaccttaatctctggtttctcgtatttttaaagctcggtacttcccttctaaatcctatcttgacgccaccattggtcataatccaagttttgtttgg 409  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22787580 agaacctcaatctctggtttctcgtatttttaaagctcggtacttcccttctaaatcctatcttgacgccaccgttggtcataatccaagttttgtttgg 22787481  T
Q  410 cgtagtatattacgcgatcgtttcatcgtgcaaggc-gggctaggtggactattggttctggtgtggatat 479  Q
    |||||||| ||| ||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  22787480 cgtagtatcttaagcgctcctttcatcgtgcgaggcggggctaggtggactattggttctggtgtggatat 22787410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 13573078 - 13573167
Alignment:
Q  10 taattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgag 99  Q
    |||||||| | ||||||||||| |||| || ||||| |||||||||||||| || |||||| | || ||||| || || |||||||||||    
T  13573078 taattcttagggtagtaagtgcttatccaaagcagggcgtgaagttatgattaaatcggttttgcaggccatcccctcatatgttatgag 13573167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 42763653 - 42763742
Alignment:
Q  17 tggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtcttttt 106  Q
    ||||| ||||| || ||||| || ||||| || || |||||||| ||||| ||||| ||||| || |||||||||||||||||| |||||    
T  42763653 tggagcagtaaatgtctatccaaagcaggtcgagaggttatgataaagtctgttcttcaagctatcccttcctatgttatgagtattttt 42763742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 425
Target Start/End: Complemental strand, 12809647 - 12809500
Alignment:
Q  278 atgttgggcaagcaagaatggaaatttctaacagaaccttaatctctggtttctcgtatttttaaagctcggtacttcccttctaaatcctatcttgacg 377  Q
    ||||| ||||||||||  |||||||||||  |||||||  | ||||| || ||| ||||||||||||   ||||||| ||| | |||  |||||     |    
T  12809647 atgttaggcaagcaaggttggaaatttctctcagaaccacattctcttgtatcttgtatttttaaagtcaggtactttcctacaaaaaactatcccacag 12809548  T
Q  378 ccaccattggtcataatccaagttttgtttggcgtagtatattacgcg 425  Q
    ||||| ||||||||||||| || | ||||||||||||||| |||||||    
T  12809547 ccacctttggtcataatcctagctgtgtttggcgtagtattttacgcg 12809500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 342
Target Start/End: Original strand, 26679249 - 26679388
Alignment:
Q  203 agttgagaaaaactatcgattcataaaactcagaggggtttggatttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaat 302  Q
    ||||| |||||||||||| | ||||| |||||  | ||| ||| |||||| ||||| || ||||||||| | || |||||||| |||||||  |||||||    
T  26679249 agttgggaaaaactatcggtgcataagactcaaggaggtatgggtttcaaagacctttcggctttcaatttggctatgttgggtaagcaaggttggaaat 26679348  T
Q  303 ttctaacagaaccttaatctctggtttctcgtatttttaa 342  Q
    | |  ||||| ||| | ||||| || |||| |||||||||    
T  26679349 tccagacagatcctgattctcttgtgtctcatatttttaa 26679388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 342
Target Start/End: Original strand, 26950856 - 26950995
Alignment:
Q  203 agttgagaaaaactatcgattcataaaactcagaggggtttggatttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaat 302  Q
    ||||| |||||||||||| | ||||| |||||  | ||| ||| |||||| ||||| || ||||||||| | || |||||||| |||||||  |||||||    
T  26950856 agttgggaaaaactatcggtgcataagactcaaggaggtatgggtttcaaagacctttcggctttcaatttggctatgttgggtaagcaaggttggaaat 26950955  T
Q  303 ttctaacagaaccttaatctctggtttctcgtatttttaa 342  Q
    | |  ||||| ||| | ||||| || |||| |||||||||    
T  26950956 tccagacagatcctgattctcttgtgtctcatatttttaa 26950995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 19233939 - 19234037
Alignment:
Q  11 aattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcag 109  Q
    |||| |||||||||||||||  ||||||| ||||| ||||| |||||||| || || || || ||  | ||||| || |||||||||||| ||||||||    
T  19233939 aattattggagtagtaagtgtttatctaaagcagggcgtgaggttatgattaaatccgtcctacagtctattccatcgtatgttatgagtatttttcag 19234037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 357
Target Start/End: Original strand, 22291025 - 22291087
Alignment:
Q  295 atggaaatttctaacagaaccttaatctctggtttctcgtatttttaaagctcggtacttccc 357  Q
    |||||||||| | ||||||||  | |||||||| ||||| |||||||||||||| ||||||||    
T  22291025 atggaaatttattacagaaccagattctctggtgtctcgaatttttaaagctcgttacttccc 22291087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 8723072 - 8723160
Alignment:
Q  17 tggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttt 105  Q
    ||||||||||| ||| |||| || |||||| |  |||||||||| || || || |||||||| || ||||| |||||||||||| ||||    
T  8723072 tggagtagtaaatgcttatccaaagcaggaaggaaagttatgattaaatctgtcctccaagctatcccttcgtatgttatgagtgtttt 8723160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 425
Target Start/End: Complemental strand, 12746464 - 12746416
Alignment:
Q  377 gccaccattggtcataatccaagttttgtttggcgtagtatattacgcg 425  Q
    |||||| ||||||||||||| || | ||||||||||||||| |||||||    
T  12746464 gccacctttggtcataatcctagctgtgtttggcgtagtattttacgcg 12746416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 472
Target Start/End: Complemental strand, 54563345 - 54562882
Alignment:
Q  10 taattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcag 109  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54563345 taattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcag 54563246  T
Q  110 ctaccgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaaccactcatagaggtataacttggttgagttgag 209  Q
     |||| ||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||  |||| |||||| || | |||||||||||| |    
T  54563245 ttaccttccacattgattacttctatcgagagaatgattaattcattttggtggggtcatggcagaaatactcgtagaggcattaattggttgagttggg 54563146  T
Q  210 aaaaactatcgattcataaaactcagaggggtttggatttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaac 309  Q
    |||| ||||||||||||||||  ||  |||||||||  ||||||||| | || |||||||| ||||||||||||||||||||||  |||||||| |||||    
T  54563145 aaaagctatcgattcataaaatccatgggggtttgggattcaaggacttatcggctttcaaccttgcgatgttgggcaagcaagggtggaaattcctaac 54563046  T
Q  310 agaaccttaatctctggtttctcgtatttttaaagctcggtacttcccttctaaatcctatcttgacgccaccattggtcataatccaagttttgtttgg 409  Q
    ||| ||| | ||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||  ||||||||||||| ||||||||||||    
T  54563045 agagcctcactctttagtttctcgtatttttaaagctcggtacttcccctctaaatcctatcttgatgccactgttggtcataatccgagttttgtttgg 54562946  T
Q  410 cgtagtatattacgcgatcgtttcatcgtgcaagg-cgggctaggtggactattggttctggtg 472  Q
    |||||||| ||||||| ||||||||| |||| |||  |||| ||||||||||||||||||||||    
T  54562945 cgtagtatcttacgcgctcgtttcattgtgcgaggtggggcaaggtggactattggttctggtg 54562882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 10 - 418
Target Start/End: Original strand, 44493480 - 44493888
Alignment:
Q  10 taattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcag 109  Q
    |||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| || |||||||| ||||| || |||||||||||| | |||||     
T  44493480 taattcgtggagtagcaagtgcctttctaaggcagggcgtgaagttatgatcaagtctgtgctccaagctattccgtcttatgttatgagtttatttcaa 44493579  T
Q  110 ctaccgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaaccactcatagaggtataacttggttgagttgag 209  Q
      |||  | |||||| ||| | |||| ||  | ||||| ||  ||||||||||||| |||||||||||  ||||| | || || | |||| ||||||| |    
T  44493580 taaccaacaacgttggttatcgctattgaacggatgatgaacacgttttggtggggccatggcagaacttctcatcggggcatgaattggatgagttggg 44493679  T
Q  210 aaaaactatcgattcataaaactcagaggggtttggatttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaac 309  Q
    ||||| ||||||| |||||||| ||  | ||  ||| ||| || || ||||||||||||||||||||||||||||| ||||| |  ||||||||||| ||    
T  44493680 aaaaattatcgatgcataaaacacatggtggcatgggttttaaagatctctcagctttcaatcttgcgatgttgggtaagcagggctggaaatttcttac 44493779  T
Q  310 agaaccttaatctctggtttctcgtatttttaaagctcggtacttcccttctaaatcctatcttgacgccaccattggtcataatccaagttttgtttgg 409  Q
     || ||| | || || || ||| |||| ||||| ||| ||||||| || |||||||| ||| |  | || ||||| ||||| || || |||| ||| |||    
T  44493780 ggagcctcactcgcttgtctcttgtatctttaaggctaggtactttccgtctaaatcttatttgaatgctaccataggtcacaacccgagttatgtgtgg 44493879  T
Q  410 cgtagtata 418  Q
    |||||||||    
T  44493880 cgtagtata 44493888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 14 - 409
Target Start/End: Complemental strand, 12528402 - 12528007
Alignment:
Q  14 tcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcagctac 113  Q
    ||||||||||| |||||||| || ||||| ||||| || |||||||| ||||| || || ||||| || || || |||||||||||| | || ||  |||    
T  12528402 tcttggagtagcaagtgcctttcaaaggcgggacgggaggttatgattaagtccgtacttcaagctataccatcttatgttatgagtttgttccaaatac 12528303  T
Q  114 cgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaaccactcatagaggtataacttggttgagttgagaaaa 213  Q
    |    | | | ||||| || ||||| || ||||| ||||||||||||||||| |||||||  ||||| ||||||||||||| |||| | ||||| || ||    
T  12528302 cagatatgcttattacatccatcgagaggatgataaattcgttttggtgggggcatggcatgaccacacatagaggtataaattggctaagttgggagaa 12528203  T
Q  214 actatcgattcataaaactcagaggggtttggatttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaacagaa 313  Q
    | | || || |||||||||||  ||||  ||| |||||| || ||||| |||||||||||||||||||| || |||||||  |||||| ||||| | ||     
T  12528202 attgtccatgcataaaactcatgggggaatgggtttcaatgatctctcggctttcaatcttgcgatgttaggtaagcaagcgtggaaacttctatcggag 12528103  T
Q  314 ccttaatctctggtttctcgtatttttaaagctcggtacttcccttctaaatcctatcttgacgccaccattggtcataatccaagttttgtttgg 409  Q
    ||| |||| || |||||||||||||||||| | || ||||| ||   |||||||| |||  | |||| ||||||||| ||||| |||| |||||||    
T  12528102 cctcaatccctcgtttctcgtatttttaaatcccgatactttccgaataaatcctttctcaatgccaacattggtcacaatccgagttatgtttgg 12528007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 10 - 417
Target Start/End: Complemental strand, 19822739 - 19822332
Alignment:
Q  10 taattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcag 109  Q
    |||||||||||| || ||||| ||||||||||| || | ||| || ||||||||||||||||| ||||| |||| ||||||||| |||||  |||| ||     
T  19822739 taattcttggagcagcaagtgtctatctaaggcggggcatgaggtcatgatcaagtcggttcttcaagctattctttcctatgtcatgagcattttccaa 19822640  T
Q  110 ctaccgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaaccactcatagaggtataacttggttgagttgag 209  Q
    |||||   ||| || |||||  |||| ||  |||||||||| |||||| |||||||||||||  | ||| ||||| | || || |  ||| ||||||| |    
T  19822639 ctacctagcactttaattacgactattgaacgaatgattaactcgtttcggtggggtcatggtcgcacctctcatcgtggaattaactggctgagttggg 19822540  T
Q  210 aaaaactatcgattcataaaactcagaggggtttggatttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaac 309  Q
    |||| || || ||  |||||  |||  | ||| |||  || || ||| | || ||||||||| | || |||||||||||||| | |||||| ||| | ||    
T  19822539 aaaagctttctatgtataaagttcatggtggtatgggctttaaagacttatcggctttcaatttagctatgttgggcaagcagggatggaagtttttgac 19822440  T
Q  310 agaaccttaatctctggtttctcgtatttttaaagctcggtacttcccttctaaatcctatcttgacgccaccattggtcataatccaagttttgtttgg 409  Q
    ||| ||  | ||||||||||||||||| ||||| ||  ||||||| || |||||||||||||||  ||| || ||||| |||||||| |||||||| |||    
T  19822439 agagccaaactctctggtttctcgtatctttaaggcaaggtactttccatctaaatcctatcttaccgctactattggccataatccgagttttgtatgg 19822340  T
Q  410 cgtagtat 417  Q
    ||||||||    
T  19822339 cgtagtat 19822332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 14483831 - 14484030
Alignment:
Q  14 tcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcagctac 113  Q
    ||||||||||||||||| ||||| ||||| ||||| ||  ||||||| ||||  || || ||||| || || || |||||||||| ||| || ||  |||    
T  14483831 tcttggagtagtaagtgtctatcgaaggcgggacgggagattatgattaagtttgtacttcaagctatcccgtcttatgttatgaatctcttccaattac 14483930  T
Q  114 cgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaaccactcatagaggtataacttggttgagttgagaaaa 213  Q
    ||   ||  | || || ||||| || || ||||| || || ||||||||||| || ||||||||||||||||| || |||| |||||||||||| |||||    
T  14483931 cggatactcttataacatctatagagaggatgataaactctttttggtgggggcacggcagaaccactcataggggcataaattggttgagttgggaaaa 14484030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 15788405 - 15788493
Alignment:
Q  17 tggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttt 105  Q
    ||||||||||| ||| |||| || |||||| | ||||||||||| || || || |||||||| |||||||| |||||||||||| ||||    
T  15788405 tggagtagtaaatgcttatccaaagcaggaagggaagttatgattaaatctgtcctccaagctattccttcatatgttatgagtgtttt 15788493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 357
Target Start/End: Complemental strand, 6007574 - 6007464
Alignment:
Q  247 tttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaacagaaccttaatctctggtttctcgtatttttaaagct 346  Q
    |||||||||||| || ||||| ||| | || ||||| || || || | |||||||||| | ||||||||  | |||||||| ||||| ||||||||||||    
T  6007574 tttcaaggacctatctgcttttaatttggctatgttaggtaaacagggatggaaatttattacagaaccagattctctggtgtctcgaatttttaaagct 6007475  T
Q  347 cggtacttccc 357  Q
    || ||||||||    
T  6007474 cgttacttccc 6007464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 423
Target Start/End: Original strand, 14484153 - 14484243
Alignment:
Q  333 gtatttttaaagctcggtacttcccttctaaatcctatcttgacgccaccattggtcataatccaagttttgtttggcgtagtatattacg 423  Q
    |||||||||||||| | ||||| || |||||||||| |||| | || ||||||||||| ||||| |||| |||| |||| ||||| |||||    
T  14484153 gtatttttaaagctagatactttccatctaaatcctttcttcatgctaccattggtcacaatccgagttatgttgggcggagtattttacg 14484243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 17788753 - 17788863
Alignment:
Q  247 tttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaacagaaccttaatctctggtttctcgtatttttaaagct 346  Q
    |||||||||||| || ||||| ||| | || ||||| || || || | |||||||||| | ||||||||  | |||||||| ||||| ||||||||||||    
T  17788753 tttcaaggacctatctgcttttaatttggctatgttaggtaaacagggatggaaatttattacagaaccagattctctggtgtctcgaatttttaaagct 17788852  T
Q  347 cggtacttccc 357  Q
    || ||||||||    
T  17788853 cgttacttccc 17788863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 19097195 - 19097305
Alignment:
Q  247 tttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaacagaaccttaatctctggtttctcgtatttttaaagct 346  Q
    |||||||||||| || ||||| ||| | || ||||| || || || | |||||||||| | ||||||||  | |||||||| ||||| ||||||||||||    
T  19097195 tttcaaggacctatctgcttttaatttggctatgttaggtaaacagggatggaaatttattacagaaccagattctctggtgtctcgaatttttaaagct 19097294  T
Q  347 cggtacttccc 357  Q
    || ||||||||    
T  19097295 cgttacttccc 19097305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 49497742 - 49497915
Alignment:
Q  10 taattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcag 109  Q
    |||||||||||||||||| ||  ||||||||||||| ||||| |||||||| || |  ||  | || |||||| |||| |||||||||||  ||||||||    
T  49497742 taattcttggagtagtaaatgtttatctaaggcagggcgtgaggttatgattaaatatgtcttgcaggccattacttcgtatgttatgagcatttttcag 49497841  T
Q  110 ctaccgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaaccactca 183  Q
     ||||  | || || ||||    |||||| |  ||||| ||||| || |||||||||||||| ||||| |||||    
T  49497842 ttaccaactactttaattaatattatcgaaaagatgatgaattccttctggtggggtcatggtagaactactca 49497915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 4481446 - 4481388
Alignment:
Q  248 ttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttct 306  Q
    |||||||| || || |||||||||||||| |||||||| |||||||  |||||||||||    
T  4481446 ttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaatttct 4481388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 4481641 - 4481519
Alignment:
Q  53 gttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcagctaccgtccacgttgattacctctatcgacagaatgattaatt 152  Q
    |||||||| ||||| ||||| |||||||||   || ||||||||||| ||||||||  ||||  | ||| | || ||| ||||||| || ||||| ||||    
T  4481641 gttatgattaagtctgttctacaagccattatgtcttatgttatgagcctttttcaattacctactacgcttatcaccactatcgaaaggatgatgaatt 4481542  T
Q  153 cgttttggtggggtcatggcaga 175  Q
    | ||||||||||| |||| ||||    
T  4481541 cattttggtgggggcatgacaga 4481519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 357
Target Start/End: Complemental strand, 31662530 - 31662420
Alignment:
Q  247 tttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaacagaaccttaatctctggtttctcgtatttttaaagct 346  Q
    ||||||||| ||||| ||||| ||| | || |||||||| || |||| |||||||||  | ||||||||  | ||||| ||| |||| ||||||||||||    
T  31662530 tttcaaggatctctccgcttttaatttagctatgttggggaaacaaggatggaaattcattacagaaccggattctcttgttgctcgaatttttaaagct 31662431  T
Q  347 cggtacttccc 357  Q
    || || |||||    
T  31662430 cgatatttccc 31662420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 355
Target Start/End: Original strand, 31972082 - 31972190
Alignment:
Q  247 tttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaacagaaccttaatctctggtttctcgtatttttaaagct 346  Q
    ||||||||| ||||| ||||| ||| | || |||||||| || || | |||||||||  | ||||||||  | ||||| ||| |||| ||||||||||||    
T  31972082 tttcaaggatctctccgcttttaatttagctatgttggggaaacagggatggaaattcattacagaaccggattctcttgttgctcgaatttttaaagct 31972181  T
Q  347 cggtacttc 355  Q
    || ||||||    
T  31972182 cgatacttc 31972190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 14 - 423
Target Start/End: Original strand, 8284 - 8690
Alignment:
Q  14 tcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcagctac 113  Q
    |||||||||||||||||||| || ||||| |||||  | ||||| |   |||| ||||| ||||| || || || |||||||||||||||||  ||  ||    
T  8284 tcttggagtagtaagtgcctttcgaaggcgggacggaaggttatta---agtctgttcttcaagctataccatcttatgttatgagtcttttctagacac 8380  T
Q  114 cgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaaccactcatagaggtataacttggttgagttgagaaaa 213  Q
    |    ||| | ||||| |||||||| || ||||| || |||||||||||||| |||||||||||| | ||||||||||||| |||||| ||||| || ||    
T  8381 cagatacgctcattacatctatcgagaggatgataaactcgttttggtgggggcatggcagaaccgcacatagaggtataaattggttaagttgggagaa 8480  T
Q  214 actatcgattcataaaactcagaggggtttggatttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaacagaa 313  Q
    ||| || || ||||||||||| |||||  ||| ||||||||| |||||||||||||||||||||||||| || |||||||  |||||||||||  | ||     
T  8481 actgtccatgcataaaactcacaggggaatgggtttcaaggatctctcagctttcaatcttgcgatgttaggtaagcaagcgtggaaatttctttcggag 8580  T
Q  314 ccttaatctctggtttctcgtatttttaaagctcggtacttcccttctaaatcctatcttgacgccaccattggtcataatccaagttttgtttggcgta 413  Q
    ||| |||| || |||||||||||||||||||| || || || ||  ||| ||||| |||  | |||| ||| ||||| ||||| || | ||||||||| |    
T  8581 cctcaatccctcgtttctcgtatttttaaagcccgatattttccgactagatcctttctcaatgccaacataggtcacaatccgagctatgtttggcgga 8680  T
Q  414 gtatattacg 423  Q
    |||| |||||    
T  8681 gtattttacg 8690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 14 - 423
Target Start/End: Complemental strand, 27011502 - 27011096
Alignment:
Q  14 tcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcagctac 113  Q
    |||||||||||||||||||| || ||||| |||||  | ||||| |   |||| ||||| ||||| || || || |||||||||||||||||  ||  ||    
T  27011502 tcttggagtagtaagtgcctttcgaaggcgggacggaaggttatta---agtctgttcttcaagctataccatcttatgttatgagtcttttctagacac 27011406  T
Q  114 cgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaaccactcatagaggtataacttggttgagttgagaaaa 213  Q
    |    ||| | ||||| |||||||| || ||||| || |||||||||||||| |||||||||||| | ||||||||||||| |||||| ||||| || ||    
T  27011405 cagatacgctcattacatctatcgagaggatgataaactcgttttggtgggggcatggcagaaccgcacatagaggtataaattggttaagttgggagaa 27011306  T
Q  214 actatcgattcataaaactcagaggggtttggatttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaacagaa 313  Q
    ||| || || ||||||||||| |||||  ||| ||||||||| |||||||||||||||||||||||||| || |||||||  |||||||||||  | ||     
T  27011305 actgtccatgcataaaactcacaggggaatgggtttcaaggatctctcagctttcaatcttgcgatgttaggtaagcaagcgtggaaatttctttcggag 27011206  T
Q  314 ccttaatctctggtttctcgtatttttaaagctcggtacttcccttctaaatcctatcttgacgccaccattggtcataatccaagttttgtttggcgta 413  Q
    ||| |||| || |||||||||||||||||||| || || || ||  ||| ||||| |||  | |||| ||| ||||| ||||| || | ||||||||| |    
T  27011205 cctcaatccctcgtttctcgtatttttaaagcccgatattttccgactagatcctttctcaatgccaacataggtcacaatccgagctatgtttggcgga 27011106  T
Q  414 gtatattacg 423  Q
    |||| |||||    
T  27011105 gtattttacg 27011096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 30857963 - 30858073
Alignment:
Q  247 tttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaacagaaccttaatctctggtttctcgtatttttaaagct 346  Q
    |||||||||||| || ||||| ||| | || ||||| || || || | |||||||||| | ||||||||  | |||||||| ||||| ||||||||||||    
T  30857963 tttcaaggacctatctgcttttaatttggctatgttaggtaaacagggatggaaatttattacagaaccagattctctggtgtctcgaatttttaaagct 30858062  T
Q  347 cggtacttccc 357  Q
    || ||||||||    
T  30858063 cgttacttccc 30858073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 55226213 - 55226323
Alignment:
Q  247 tttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaacagaaccttaatctctggtttctcgtatttttaaagct 346  Q
    |||||||||||| || ||||| ||| | || ||||| || || || | |||||||||| | ||||||||  | |||||||| ||||| ||||||||||||    
T  55226213 tttcaaggacctatctgcttttaatttggctatgttaggtaaacagggatggaaatttattacagaaccagattctctggtgtctcgaatttttaaagct 55226312  T
Q  347 cggtacttccc 357  Q
    || ||||||||    
T  55226313 cgttacttccc 55226323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 36307832 - 36307620
Alignment:
Q  10 taattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcag 109  Q
    ||||||||||||||||||||| || ||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||| || |||||||| || ||     
T  36307832 taattcttggagtagtaagtgtctctctaaagcaggtcgggaagttatgataaagtcagttctccaagccattccttcctacgtcatgagtctcttccac 36307733  T
Q  110 ctaccgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaaccactcatagaggtataacttggttgagttgag 209  Q
     ||||  | |||||| ||||  | ||||| |||||||| || |||||||||||||||||||| |||||  | || |||||||||| ||||||||| || |    
T  36307732 ttaccaactacgttgtttactaccatcgaaagaatgatgaactcgttttggtggggtcatggtagaacttcgcacagaggtataaattggttgagctggg 36307633  T
Q  210 aaaaactatcgat 222  Q
    |||| || |||||    
T  36307632 aaaagctttcgat 36307620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 408
Target Start/End: Complemental strand, 13702052 - 13701891
Alignment:
Q  247 tttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaacagaaccttaatctctggtttctcgtatttttaaagct 346  Q
    ||||||||| ||||| |||||||||||||||||||| || |||||||  || ||||||||| | || ||| |||| || ||||||||||||||||||||     
T  13702052 tttcaaggatctctcggctttcaatcttgcgatgttaggtaagcaagcgtgaaaatttctatcggagcctcaatccctcgtttctcgtatttttaaagcc 13701953  T
Q  347 cggtacttcccttctaaatcctatcttgacgccaccattggtcataatccaagttttgtttg 408  Q
    || ||||| ||  ||||||||| |||  | |||| ||||||||| ||||| |||| ||||||    
T  13701952 cgatactttccgactaaatcctttctcaatgccaacattggtcacaatccgagttatgtttg 13701891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 13813368 - 13813229
Alignment:
Q  74 caagccattccttcctatgttatgagtctttttcagctaccgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggca 173  Q
    ||||| ||||| || ||||||||||||||||||||||| ||  | ||| | || ||| | ||||| || ||||| |||| |||||||||||| |||||      
T  13813368 caagctattccgtcttatgttatgagtctttttcagcttcccactacgcttatcaccaccatcgaaaggatgatgaatttgttttggtgggggcatggtc 13813269  T
Q  174 gaaccactcatagaggtataacttggttgagttgagaaaa 213  Q
    |||| || ||||||||||| |  ||||||||||| |||||    
T  13813268 gaactacacatagaggtattaactggttgagttgggaaaa 13813229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 9529772 - 9529842
Alignment:
Q  53 gttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcagctaccgtccacgtt 123  Q
    |||||||||||||| || || ||||||||||| || |||||||||||||| | |||| |||| ||||||||    
T  9529772 gttatgatcaagtcagtccttcaagccattccctcatatgttatgagtctgtatcagttaccctccacgtt 9529842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 14504322 - 14504432
Alignment:
Q  247 tttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaacagaaccttaatctctggtttctcgtatttttaaagct 346  Q
    |||||||||||| || ||||| ||| | || ||||| || || || | |||||||||| | ||||||||  | |||||||| ||||| ||||||||||||    
T  14504322 tttcaaggacctatctgcttttaatttggctatgttaggtaaacagggatggaaatttattacagaaccagattctctggtgtctcgaatttttaaagct 14504421  T
Q  347 cggtacttccc 357  Q
    || ||||||||    
T  14504422 cgttacttccc 14504432  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 372
Target Start/End: Complemental strand, 15991948 - 15991823
Alignment:
Q  247 tttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttctaacagaaccttaatctctggtttctcgtatttttaaagct 346  Q
    |||||||||||| || ||||| ||| | || ||||| || || || | |||||||||| | ||| ||||  | |||||||| ||| | ||||||||||||    
T  15991948 tttcaaggacctatctgcttttaatttggctatgttaggtaaacagggatggaaatttattacataaccagattctctggtgtcttgaatttttaaagct 15991849  T
Q  347 cggtacttcccttctaaatcctatct 372  Q
    || |||||||| ||||  ||||||||    
T  15991848 cgttacttcccctctagctcctatct 15991823  T

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Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 38490697 - 38490485
Alignment:
Q  10 taattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcag 109  Q
    ||||||||||||||||||||| || ||||| ||||| || ||||||||||| ||||| ||||| |||||||||||||| || || |||||||| || ||     
T  38490697 taattcttggagtagtaagtgtctctctaaagcaggtcgggaagttatgataaagtcagttcttcaagccattccttcttacgtcatgagtctcttccac 38490598  T
Q  110 ctaccgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaaccactcatagaggtataacttggttgagttgag 209  Q
     ||||  | ||| |||||||  | ||||| |||||||| || |||||||||||||||||||| |||||  | ||||||||||||| |||||||||||| |    
T  38490597 ttaccaactacgctgattactaccatcgaaagaatgatgaactcgttttggtggggtcatggtagaacttcgcatagaggtataaattggttgagttggg 38490498  T
Q  210 aaaaactatcgat 222  Q
    |||| || |||||    
T  38490497 aaaagctttcgat 38490485  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 344
Target Start/End: Original strand, 17177365 - 17177508
Alignment:
Q  201 tgagttgagaaaaactatcgattcataaaactcagaggggtttggatttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaa 300  Q
    ||||||| || ||||| || || |||||||||||  ||||  ||| ||||||||| ||||| || ||||||||||||||||| || |||||||  |||||    
T  17177365 tgagttgggagaaactgtccatgcataaaactcacgggggaatgggtttcaaggatctctcggcgttcaatcttgcgatgttaggtaagcaagcgtggaa 17177464  T
Q  301 atttctaacagaaccttaatctctggtttctcgtatttttaaag 344  Q
    ||||||  | || ||| |||| || |||||||||||||||||||    
T  17177465 atttctttcggagcctcaatccctcgtttctcgtatttttaaag 17177508  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 168
Target Start/End: Complemental strand, 2004320 - 2004190
Alignment:
Q  38 aaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcagctaccgtccacgttgattacctctatcg 137  Q
    ||||| ||||| ||||||||||| ||||| ||  | || || ||||| || ||||| |||||| | || ||||| || || || ||||||||  ||||||    
T  2004320 aaggccggacgagaagttatgataaagtccgtcttgcaggctattccatcttatgtgatgagtatcttccagctgccatctactttgattactgctatcg 2004221  T
Q  138 acagaatgattaattcgttttggtggggtca 168  Q
    |  ||||||||||||| ||||||||||||||    
T  2004220 agcgaatgattaattcattttggtggggtca 2004190  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 41339249 - 41339415
Alignment:
Q  11 aattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcagc 110  Q
    |||||||||||| ||||||| |||||||||| ||| ||||| |||||||| || || ||  | || || ||||  || ||| | |||||| | |||||||    
T  41339249 aattcttggagtggtaagtgtctatctaagggagggcgtgaggttatgataaaatccgtcttgcaggctattctgtcatatataatgagtatctttcagc 41339348  T
Q  111 taccgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaac 177  Q
    ||||| | |||||||||| ||| || || |  ||||| ||||  || |||||||||||||| |||||    
T  41339349 taccggctacgttgattaactccatagagaagatgatgaattatttctggtggggtcatggtagaac 41339415  T

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Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 8864011 - 8863716
Alignment:
Q  11 aattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcagc 110  Q
    |||||||||||||| |||||||| || |||||| |||| ||  ||||||| ||||| ||||| ||||||||||| || ||||||||||| ||||||||      
T  8864011 aattcttggagtagcaagtgcctctcaaaggcacgacgggagtttatgattaagtctgttctacaagccattccatcttatgttatgagcctttttcaat 8863912  T
Q  111 taccgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaaccactcatagaggtataacttggttgagttgaga 210  Q
    ||||  ||||| | || ||| ||||||| || ||||| ||||| ||||||||||| |||| |||| | || ||| | ||||| |  | ||| ||||| ||    
T  8863911 tacctaccacgcttatcaccactatcgaaaggatgatgaattcattttggtgggggcatgacagatctacacatcggggtattaactagttaagttggga 8863812  T
Q  211 aaaactatcgattcataaaactcagaggggtttggatttcaaggacctctcagctttcaatcttgcgatgttgggcaagcaagaatggaaatttct 306  Q
    |||  |||| || |||||  | ||  | ||  |||  |||||||| || || ||||||||||||||||||||||| |||||||  |||||||||||    
T  8863811 aaagttatccatgcataagtcccatggtggaatggggttcaaggatctttcggctttcaatcttgcgatgttgggaaagcaagggtggaaatttct 8863716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 29960838 - 29961004
Alignment:
Q  11 aattcttggagta--gtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttca 108  Q
    |||||||||||||  | |||||||| || |||||||| || ||  ||||||| ||||| ||||| ||||||||||| || ||||||||||| ||||||||    
T  29960838 aattcttggagtatagcaagtgcctctcaaaggcagggcgggagattatgattaagtctgttctacaagccattccgtcttatgttatgagcctttttca 29960937  T
Q  109 gctaccgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcaga 175  Q
      ||||  | ||| | || ||| ||||||| || ||||| ||||| ||||||||||| |||||||||    
T  29960938 attacctactacgcttatcaccactatcgaaaggatgatgaattcattttggtgggggcatggcaga 29961004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 48768385 - 48768474
Alignment:
Q  11 aattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagt 100  Q
    ||||||||||||||||| ||  ||||||||||||| || || ||||||||||| || ||||| || || ||||| || ||||| ||||||    
T  48768385 aattcttggagtagtaattgtttatctaaggcagggcgcgaggttatgatcaaatccgttctacaggctattccgtcgtatgtcatgagt 48768474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 293
Target Start/End: Complemental strand, 17207783 - 17207652
Alignment:
Q  162 ggggtcatggcagaaccactcatagaggtataacttggttgagttgagaaaaactatcgattcataaaactcagaggggtttggatttcaaggacctctc 261  Q
    ||||||| || ||||||||||||| ||| |||| |||| | ||||| |||||  | || || || ||| ||||  ||||  | | ||||||||| |||||    
T  17207783 ggggtcacggtagaaccactcataaaggcataaattggcttagttgggaaaagttgtccatgcacaaatctcaagggggaataggtttcaaggatctctc 17207684  T
Q  262 agctttcaatcttgcgatgttgggcaagcaag 293  Q
    |||||||||||||||||| || || |||||||    
T  17207683 agctttcaatcttgcgatattaggaaagcaag 17207652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 44674084 - 44674123
Alignment:
Q  51 aagttatgatcaagtcggttctccaagccattccttccta 90  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  44674084 aagttatgatcaagtcggttcttcaagccattccctccta 44674123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 6559841 - 6559939
Alignment:
Q  10 taattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttca 108  Q
    |||||| |||||||| || ||| ||||||| || ||||||||||||||||| ||||| ||| | ||||| |||   || ||||| |||||| |||||||    
T  6559841 taattcgtggagtagcaaatgcttatctaaagcgggacgtgaagttatgattaagtctgttttgcaagcaattttgtcatatgtgatgagtatttttca 6559939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 45013604 - 45013785
Alignment:
Q  11 aattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcagc 110  Q
    ||||||||||||||||| ||  ||||||||||||  || || ||| ||||||| || ||||| || || ||||| |  ||||| |||||| ||||||| |    
T  45013604 aattcttggagtagtaattgtttatctaaggcagtgcgcgaggttgtgatcaaatccgttctacaggctattccgttgtatgtcatgagtatttttcaac 45013703  T
Q  111 taccgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaaccactcatagaggtat 192  Q
    | ||| ||||  |||||  | |||| || |  ||||| ||||| ||||||||||||||||| ||||| |||||  |||||||    
T  45013704 tgccggccactctgattgacactattgaaaagatgatgaattctttttggtggggtcatggtagaactactcagcgaggtat 45013785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 11551703 - 11551884
Alignment:
Q  11 aattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcagc 110  Q
    ||||||||||||||||| ||  ||||||||||||| || |||||||||||||| || ||||  || || ||||  |  ||||| |||||| ||||||| |    
T  11551703 aattcttggagtagtaaatgtttatctaaggcagggcgcgaagttatgatcaaatccgttcgacaggctattctgttgtatgtcatgagtatttttcaac 11551802  T
Q  111 taccgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaaccactcatagaggtat 192  Q
    |  |||||||  | |||  | |||| || |  ||||| ||||| |||||||||| |||||| ||||| |||||  |||||||    
T  11551803 tgtcgtccactcttattgacactattgaaaagatgatgaattctttttggtgggatcatggtagaactactcagcgaggtat 11551884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 20469550 - 20469638
Alignment:
Q  17 tggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttt 105  Q
    ||||| ||||| |||||||| || ||||| || || |||||||||||||| ||||| ||||| || || |||||||| |||||| ||||    
T  20469550 tggagcagtaaatgcctatccaaagcaggtcgagaggttatgatcaagtctgttcttcaagctatcccatcctatgtaatgagtatttt 20469638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 27070772 - 27070825
Alignment:
Q  53 gttatgatcaagtcggttctccaagccattccttcctatgttatgagtcttttt 106  Q
    |||||||| ||||| ||||| ||||| || |||||||||||||||||| |||||    
T  27070772 gttatgataaagtctgttcttcaagctatcccttcctatgttatgagtattttt 27070825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 11605953 - 11605787
Alignment:
Q  11 aattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcagc 110  Q
    |||||||||||||||||||| || || || ||||| |||||||| ||||| || ||||| || ||||| || ||||| ||||| |||||  |||||||      
T  11605953 aattcttggagtagtaagtgtctttccaaagcagggcgtgaagtcatgattaaatcggtccttcaagctatcccttcgtatgtcatgagcatttttcaat 11605854  T
Q  111 taccgtccacgttgattacctctatcgacagaatgattaattcgttttggtggggtcatggcagaac 177  Q
    | ||  | ||  | |||    | ||||| | |||||| |||||||||||||||||||||||||||||    
T  11605853 tgccagcaactcttattgataccatcgagaaaatgatgaattcgttttggtggggtcatggcagaac 11605787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 26905878 - 26905973
Alignment:
Q  10 taattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttt 105  Q
    ||||||||||||| | |||||| | ||||| ||||| || || |||||||| || || ||||| || || |||||||| |||||||||||| ||||    
T  26905878 taattcttggagtggaaagtgcttgtctaaagcagggcgcgaggttatgataaaatctgttctgcaggcaattccttcttatgttatgagtatttt 26905973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 20928462 - 20928511
Alignment:
Q  11 aattcttggagtagtaagtgcctatctaaggcaggacgtgaagttatgat 60  Q
    |||||||||||| ||||||| |||||||||| ||| ||||| ||||||||    
T  20928462 aattcttggagtggtaagtgtctatctaagggagggcgtgaggttatgat 20928511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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