View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_17 (Length: 494)
Name: NF5866_low_17
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 100 - 477
Target Start/End: Original strand, 12444740 - 12445114
Alignment:
| Q |
100 |
taatttttatctttatttatcaatgctattaagtcaccagttttaacaatcaaaggtatggttcaaatagtaaatgaatttcctaaaattcaaat-aatc |
198 |
Q |
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| T |
12444740 |
taatttttatctttatttatcaatgctattaagtcaccagttttaacaatcaaaggtatggttcaaatagtaaatgaatttcctaaaagtcaaattaatc |
12444839 |
T |
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| Q |
199 |
aaaaatattattatc-gaaataattcttataacaagagttgacattcttcttaaaagtgagattcacttgctacatgcgtaaatatttctaatattaacg |
297 |
Q |
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| T |
12444840 |
aaaaatattattatctgaaataattcttataacaagagttgacattcttcttaaaagtgagattcacttgctacatgcgtaaatatttctaatattaacg |
12444939 |
T |
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| Q |
298 |
atacaaattcaaaaattcaattacttaattgaaaggtctaataggatcataggatcatactgctatcgaacaaatttgcactttcatgtactagtatttt |
397 |
Q |
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| T |
12444940 |
atacaaattcaaaaattcaattacttaattgaaaggtctaataggatcataggatcatactgctatcgaacaaa-ttgcattttcatgtactagtatttt |
12445038 |
T |
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| Q |
398 |
tcttcataggatcaaattacttcaactatgtacttactatttacatctctatgattagttgactttacacgtatttgagc |
477 |
Q |
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| T |
12445039 |
tcttcatatgatcaaattacttcaactatg----tactatttacatctctatgattagttgactttagacgtatttgagc |
12445114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 12444142 - 12444239
Alignment:
| Q |
11 |
cagagacataatatataataataatttgaacattagttcatcacattgtagaatctaatctttttcgttagaccaaacctctatcgatataattttta |
108 |
Q |
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| T |
12444142 |
cagacacataatatataataataatttgaacattagttcatcacattgtggaatctaatctttttcgttagaccaaacctctatcgatataattttta |
12444239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 30645520 - 30645465
Alignment:
| Q |
351 |
atcatactgctatcgaacaaatttgcactttcatgtactagtatttttcttcatag |
406 |
Q |
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| T |
30645520 |
atcatactgctattgaacaaatttgcattttcatgtactagtattttacttcatag |
30645465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 30645458 - 30645391
Alignment:
| Q |
403 |
ataggatcaaattacttcaactatgtact--tactattt-acatctctatgattagttgactttacac |
467 |
Q |
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| T |
30645458 |
ataggatcaaattgcttcaattatgtaccagtactattttatatctctatgattagttgactctacac |
30645391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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