View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_18 (Length: 484)
Name: NF5866_low_18
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 4823709 - 4823241
Alignment:
| Q |
1 |
tgtaaattggggtgaatcacatatacaaatgaaaaagatatatgctagtaaagcttcaaatcaattttattgcacactgcactttctaacacagtttaac |
100 |
Q |
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| T |
4823709 |
tgtaaattggggtgaatcacatatacaaatgaaaaagatatatgctagtaaagcttcaaatcaattttattgcacactgcactttctaacacagtttaac |
4823610 |
T |
|
| Q |
101 |
aatgactaatccttgtttgagaacatatttgacacacaatgcgggttttattctcacctcccagccggattttcttcctatacgtgatttcaaaatcaaa |
200 |
Q |
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| T |
4823609 |
aatgactaatccttgtttgagaacatatttgacacacaatgtgggttttattctcacctcccagccggattttcttcctatacgtgatttcaaaatcaaa |
4823510 |
T |
|
| Q |
201 |
cttttgatcactagcttaaactactcgagtcccttactactcggaccaacatatagtttgtccagaaaccctatttcatttaaaagcaagcacttaagtg |
300 |
Q |
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| T |
4823509 |
cttttgatcactagcttaaactactcgagtcccttactactcggaccaacatatagtttgtccagaaaacctatttcatttaaaagcaagcacttaagtg |
4823410 |
T |
|
| Q |
301 |
caccaaaaacttaaaacttagttgaatctaagtctatatggtacatagtatgatataaccagtgctttaaaacgagatggcacaatccttaatattgtat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4823409 |
caccaaaaacttaaaacttagttgaatctaagtctatatggtacatagtatgatataaccagtgctttaaaacgagatggcacaatccttaatattgtat |
4823310 |
T |
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| Q |
401 |
catagcggggcggctgatgcaaactcaattgtgttcgcagaggggatatgacttcgtggctgaggtgac |
469 |
Q |
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| T |
4823309 |
catagcggggcggctgatgcaaactcaattgtgttcgcagaggggatatgacttcgtggctgaggtgac |
4823241 |
T |
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