View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_19 (Length: 457)
Name: NF5866_low_19
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 447
Target Start/End: Complemental strand, 32502408 - 32501986
Alignment:
| Q |
17 |
atgttgcattaaatatttttatannnnnnnnnnacattttgaagatagaagttttgtattgtaaaattggattatgttgattttgtggtggaggtatctc |
116 |
Q |
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| T |
32502408 |
atgttgcattaaatatttttatatattttttatacattttgaagatagaagttttgtattgtaaaattggatcatgttgattttgtggtggaggtatctc |
32502309 |
T |
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| Q |
117 |
tggagtctaggggacgatcaattgtgaagagtgttgggtgggattaagggacttggcaccaaatagtaagtgttaagatgatttttgaagattcatgttt |
216 |
Q |
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| T |
32502308 |
tggagtctaggggacgatgaatagtgaagagtgttgggtgggattaagagacttggcaccaaatagtaagtgttaagatgatttttgaagattcatgttt |
32502209 |
T |
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| Q |
217 |
cccatttatttaaaacattattctccatgttatgtccaattttatgtttgaaaatgaaagaaagaaagaaaatgtagatttgtcacatttcacttgttga |
316 |
Q |
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| T |
32502208 |
cccatttatttaaaacattattctc--------ttccaattttatgtttgaaaatgaaagaaagaaagaaaatgtagacttgtcacatatcacttgttga |
32502117 |
T |
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| Q |
317 |
cgatatcccatctctgtagaatgaaagtagtcaaattgtgtgtttgaagtcccacatcggaacctcaagagagaaacaaaacaaatgtgtattataaaac |
416 |
Q |
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|||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32502116 |
agatatcccatctctatagaatgaaagtagccaaattatgtgtttgaagtcccacatcggaacctcaagagagaaacaaaacaaatgtgtattataaaac |
32502017 |
T |
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| Q |
417 |
cacaacggagtatcttgtcaattaacctatg |
447 |
Q |
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||||| |||| |||||||||||||||||||| |
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| T |
32502016 |
cacaatggagcatcttgtcaattaacctatg |
32501986 |
T |
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