View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_21 (Length: 452)
Name: NF5866_low_21
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Complemental strand, 48833679 - 48833252
Alignment:
| Q |
8 |
tgtaaacttgtaagtcataagtttatatttctattttgaacatttttt--caaatttttcatgttcaaataatatcattctaaatgtaaatacatgccac |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48833679 |
tgtaaacttgtaagtcataagtttatatttctattttgaacattttttttcaaatttttcatgttcaaataatatcattctaaatgtaaatatatgccac |
48833580 |
T |
|
| Q |
106 |
caaaatgtactaggaaatgaacattacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtc |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48833579 |
caaa-tgtactaggaaatgaacattacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtc |
48833481 |
T |
|
| Q |
206 |
caaatggtgggttttgttttgaaacctgatattcagtgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcataagacc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48833480 |
caaatggtgggttttgttttgaaacctgatattcattgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcatacgacc |
48833381 |
T |
|
| Q |
306 |
aagatcaacaacaattcttaatccactaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttctactctct |
405 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48833380 |
aagatcaacaacaattgttaatccactaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttctactctct |
48833281 |
T |
|
| Q |
406 |
ttttctccaaaccatcccatggagaatgt |
434 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
48833280 |
ttttctccaaaccatcccatggagaatgt |
48833252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 130 - 434
Target Start/End: Original strand, 48791837 - 48792141
Alignment:
| Q |
130 |
tacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggtgggttttgttttgaaa |
229 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
48791837 |
tacctaacactatggcccttgatctggaagccaggaccttgaggttgatgactggtaagactatgctggtttggtccaaatggtgggctttgttttgaaa |
48791936 |
T |
|
| Q |
230 |
cctgatattcagtgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcataagaccaagatcaacaacaattcttaatcc |
329 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| || ||||||||||||||||| ||||||| |
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|
| T |
48791937 |
cctgatattcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatggttaatcc |
48792036 |
T |
|
| Q |
330 |
actaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttctactctctttttctccaaaccatcccatggag |
429 |
Q |
| |
|
|||||||||||||||||| ||||| ||| | ||||||||||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
48792037 |
actaataggcctcacatatatattaacactgttttctttcataaaacagtcaactctcacagtccttttactctcttcttctccaaaccatcccatggag |
48792136 |
T |
|
| Q |
430 |
aatgt |
434 |
Q |
| |
|
||||| |
|
|
| T |
48792137 |
aatgt |
48792141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 129 - 433
Target Start/End: Original strand, 15827308 - 15827612
Alignment:
| Q |
129 |
ttacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggtgggttttgttttgaa |
228 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
15827308 |
ttacctaacactatggccattgatcaagaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggaggtctttgttttgaa |
15827407 |
T |
|
| Q |
229 |
acctgatattcagtgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcataagaccaagatcaacaacaattcttaatc |
328 |
Q |
| |
|
||| |||||||||||||||||| ||||||||| ||||| ||| || |||||||| |||||||||||||| || ||||||||| |||| ||| |||||| |
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|
| T |
15827408 |
gccttatattcagtgttctcagccgtaggcacaacttcaacttctctatcatgatattcaacaattttcatgagtccaagatcagcaaccattgttaatc |
15827507 |
T |
|
| Q |
329 |
cactaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttctactctctttttctccaaaccatcccatgga |
428 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||| ||||||||||||| || |||| |||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
15827508 |
cactaataggcctcacaaaaaaattaacagtgttttctttcataaaacaatcaactctcacagtccttttactctcttcttctccaaaccatcccatgga |
15827607 |
T |
|
| Q |
429 |
gaatg |
433 |
Q |
| |
|
||||| |
|
|
| T |
15827608 |
gaatg |
15827612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 128 - 425
Target Start/End: Original strand, 48817383 - 48817680
Alignment:
| Q |
128 |
attacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggtgggttttgttttga |
227 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48817383 |
attacctaacactgtgaccattgatctgaaagccaggaccttgaggttgataactagcaagactatgctgttttggtccaaatggtggactttgttttga |
48817482 |
T |
|
| Q |
228 |
aacctgatattcagtgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcataagaccaagatcaacaacaattcttaat |
327 |
Q |
| |
|
|||| || ||||| |||||||| |||||||| | ||||| || || ||||| ||||||||||||||||| |||| ||||||| | || || | | | |
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|
| T |
48817483 |
aaccctgtaatcagtattctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttcattagactaagatcagccaccatggtgatt |
48817582 |
T |
|
| Q |
328 |
ccactaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttctactctctttttctccaaaccatcccat |
425 |
Q |
| |
|
||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
48817583 |
ccagtaataggcctaacatatatattaacagtactttctttcataaaacagtcaactctcacagtccttctattctctttttctccaaaccatcccat |
48817680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 236 - 401
Target Start/End: Complemental strand, 40845799 - 40845634
Alignment:
| Q |
236 |
attcagtgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcataagaccaagatcaacaacaattcttaatccactaat |
335 |
Q |
| |
|
|||| ||||||||| | |||||||||| |||||| | || ||||||||||||||||| |||||||| ||||||||||||||||| | | |||| |||| |
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|
| T |
40845799 |
attctgtgttctcatccgtaggcacagcttcaataactctatcatgatactcaacaatcttcataagttcaagatcaacaacaattttaattccagtaat |
40845700 |
T |
|
| Q |
336 |
aggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttctact |
401 |
Q |
| |
|
|||||| ||||| ||||| |||| |||||||||| |||||||| | |||||||||||| ||||| |
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|
| T |
40845699 |
aggcctaacatatatattggcagtgttttctttcattaagcagtctaacctcacagtcctactact |
40845634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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