View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5866_low_22 (Length: 452)

Name: NF5866_low_22
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5866_low_22
NF5866_low_22
[»] chr1 (59 HSPs)
chr1 (104-298)||(7277259-7277455)
chr1 (326-435)||(36232722-36232831)
chr1 (345-435)||(27209919-27210009)
chr1 (347-432)||(36326159-36326244)
chr1 (349-432)||(5359236-5359319)
chr1 (345-435)||(31634247-31634335)
chr1 (347-435)||(2219402-2219490)
chr1 (359-435)||(26040735-26040811)
chr1 (358-418)||(51049590-51049650)
chr1 (349-435)||(14352632-14352721)
chr1 (328-435)||(21304742-21304848)
chr1 (328-435)||(28706558-28706665)
chr1 (328-432)||(37280936-37281036)
chr1 (345-435)||(47293549-47293641)
chr1 (349-435)||(12267587-12267673)
chr1 (310-435)||(16040143-16040268)
chr1 (347-435)||(26583794-26583883)
chr1 (359-435)||(37495895-37495969)
chr1 (347-435)||(37541066-37541155)
chr1 (365-422)||(39420666-39420722)
chr1 (326-390)||(47792124-47792188)
chr1 (349-435)||(20986544-20986624)
chr1 (347-422)||(52830368-52830443)
chr1 (347-429)||(32587837-32587919)
chr1 (172-213)||(4203324-4203365)
chr1 (334-407)||(16451685-16451758)
chr1 (334-407)||(16460838-16460911)
chr1 (382-435)||(52382375-52382428)
chr1 (336-421)||(9590592-9590679)
chr1 (348-404)||(46880512-46880568)
chr1 (347-395)||(49494117-49494165)
chr1 (359-422)||(50086115-50086176)
chr1 (142-196)||(24361095-24361149)
chr1 (365-435)||(27932805-27932875)
chr1 (365-435)||(46273226-46273296)
chr1 (365-435)||(50926813-50926883)
chr1 (382-435)||(5115814-5115867)
chr1 (347-435)||(26924073-26924162)
chr1 (371-432)||(29225386-29225447)
chr1 (347-435)||(29756095-29756184)
chr1 (347-421)||(34332188-34332264)
chr1 (359-420)||(42926215-42926276)
chr1 (311-435)||(4466072-4466196)
chr1 (383-435)||(11425859-11425911)
chr1 (347-395)||(36467149-36467197)
chr1 (347-395)||(50267392-50267440)
chr1 (336-395)||(50334030-50334089)
chr1 (349-432)||(52432381-52432464)
chr1 (365-435)||(705321-705391)
chr1 (360-394)||(38664508-38664542)
chr1 (347-435)||(3160640-3160729)
chr1 (347-401)||(28908187-28908243)
chr1 (347-423)||(45049069-45049143)
chr1 (345-390)||(46862777-46862822)
chr1 (345-390)||(50777218-50777263)
chr1 (347-395)||(6787353-6787401)
chr1 (348-395)||(28424279-28424327)
chr1 (380-408)||(52146349-52146377)
chr1 (380-408)||(52146652-52146680)
[»] chr2 (39 HSPs)
chr2 (299-435)||(18460554-18460690)
chr2 (311-435)||(9724944-9725068)
chr2 (311-435)||(24356177-24356301)
chr2 (328-435)||(43182338-43182445)
chr2 (345-435)||(9472488-9472578)
chr2 (311-435)||(7213541-7213665)
chr2 (335-435)||(39807279-39807379)
chr2 (328-423)||(6685606-6685701)
chr2 (315-422)||(28844141-28844248)
chr2 (311-422)||(36748227-36748338)
chr2 (347-431)||(28925801-28925885)
chr2 (347-435)||(314493-314582)
chr2 (347-424)||(40965091-40965168)
chr2 (347-435)||(38280149-38280237)
chr2 (359-413)||(3199983-3200038)
chr2 (351-422)||(33755336-33755407)
chr2 (311-422)||(37528988-37529099)
chr2 (365-435)||(4282990-4283060)
chr2 (349-431)||(18181168-18181250)
chr2 (311-435)||(1908408-1908535)
chr2 (347-435)||(14890383-14890469)
chr2 (345-390)||(43370895-43370940)
chr2 (370-422)||(733988-734040)
chr2 (371-407)||(10988299-10988335)
chr2 (347-422)||(32556251-32556324)
chr2 (359-431)||(36103266-36103338)
chr2 (347-406)||(13375141-13375200)
chr2 (365-432)||(31592619-31592685)
chr2 (347-421)||(8550595-8550669)
chr2 (347-421)||(10069538-10069612)
chr2 (359-421)||(23685039-23685101)
chr2 (348-420)||(5007194-5007265)
chr2 (365-422)||(12949936-12949992)
chr2 (345-390)||(28585717-28585762)
chr2 (347-424)||(43950401-43950478)
chr2 (346-390)||(7931435-7931479)
chr2 (347-422)||(10394238-10394311)
chr2 (347-431)||(28572278-28572361)
chr2 (347-395)||(43077679-43077727)
[»] chr4 (39 HSPs)
chr4 (311-441)||(44633216-44633346)
chr4 (311-435)||(48400548-48400672)
chr4 (334-435)||(35029101-35029202)
chr4 (328-435)||(35998051-35998158)
chr4 (311-435)||(34790868-34790992)
chr4 (328-435)||(49401722-49401829)
chr4 (304-435)||(55360258-55360389)
chr4 (311-435)||(39052818-39052942)
chr4 (311-435)||(25149518-25149642)
chr4 (328-435)||(28279903-28280010)
chr4 (339-424)||(29550672-29550757)
chr4 (359-431)||(38160117-38160189)
chr4 (359-435)||(42051621-42051697)
chr4 (347-435)||(20964240-20964329)
chr4 (348-441)||(30680392-30680485)
chr4 (359-431)||(27977217-27977289)
chr4 (347-395)||(42670336-42670384)
chr4 (347-410)||(9051930-9051993)
chr4 (328-435)||(10099659-10099766)
chr4 (365-424)||(13719852-13719911)
chr4 (347-429)||(20294087-20294169)
chr4 (347-422)||(35909526-35909601)
chr4 (347-413)||(16493251-16493317)
chr4 (347-435)||(28330860-28330949)
chr4 (347-395)||(8295135-8295183)
chr4 (347-431)||(33047562-33047646)
chr4 (359-431)||(37309768-37309840)
chr4 (359-413)||(11469914-11469971)
chr4 (359-413)||(11521490-11521547)
chr4 (362-421)||(54729452-54729511)
chr4 (365-435)||(38319977-38320047)
chr4 (365-410)||(10309227-10309272)
chr4 (347-435)||(25902414-25902503)
chr4 (347-395)||(1825199-1825247)
chr4 (347-431)||(4360361-4360445)
chr4 (347-407)||(34021131-34021191)
chr4 (372-435)||(37787027-37787088)
chr4 (347-422)||(40020898-40020976)
chr4 (347-406)||(42132910-42132970)
[»] chr3 (34 HSPs)
chr3 (311-435)||(51165018-51165142)
chr3 (348-435)||(54021412-54021499)
chr3 (328-435)||(1334715-1334822)
chr3 (311-421)||(53051106-53051216)
chr3 (349-435)||(53754019-53754105)
chr3 (347-435)||(38600759-38600847)
chr3 (347-435)||(32977743-32977831)
chr3 (365-435)||(36315706-36315774)
chr3 (142-232)||(421514-421604)
chr3 (135-232)||(404473-404570)
chr3 (370-435)||(41287328-41287393)
chr3 (349-435)||(48409650-48409738)
chr3 (361-431)||(1772073-1772143)
chr3 (386-435)||(21585402-21585451)
chr3 (347-431)||(9017871-9017955)
chr3 (347-431)||(33994727-33994811)
chr3 (347-410)||(44218987-44219051)
chr3 (312-431)||(14756032-14756151)
chr3 (347-394)||(39364990-39365037)
chr3 (365-432)||(55415410-55415477)
chr3 (347-401)||(2868674-2868728)
chr3 (347-401)||(17776947-17777001)
chr3 (347-401)||(19078248-19078302)
chr3 (393-435)||(29858864-29858906)
chr3 (349-409)||(9218236-9218297)
chr3 (345-390)||(48169945-48169990)
chr3 (345-390)||(50676694-50676739)
chr3 (345-390)||(54014458-54014503)
chr3 (347-395)||(10855100-10855148)
chr3 (359-431)||(11251092-11251164)
chr3 (347-395)||(32827257-32827305)
chr3 (365-433)||(53583532-53583599)
chr3 (347-431)||(54122177-54122261)
chr3 (347-395)||(54783069-54783117)
[»] scaffold0003 (1 HSPs)
scaffold0003 (311-435)||(352380-352502)
[»] chr8 (31 HSPs)
chr8 (311-421)||(5878142-5878254)
chr8 (326-435)||(40077682-40077791)
chr8 (342-435)||(29638367-29638460)
chr8 (311-435)||(28791374-28791498)
chr8 (328-421)||(39998243-39998336)
chr8 (328-435)||(14117528-14117635)
chr8 (347-432)||(14690029-14690115)
chr8 (347-431)||(5392119-5392203)
chr8 (349-433)||(32241379-32241463)
chr8 (340-435)||(41726587-41726680)
chr8 (359-422)||(5423129-5423192)
chr8 (384-435)||(11637206-11637256)
chr8 (347-401)||(29615898-29615952)
chr8 (347-435)||(1494200-1494289)
chr8 (351-424)||(28802844-28802917)
chr8 (347-407)||(33743870-33743931)
chr8 (349-432)||(2195537-2195620)
chr8 (347-407)||(22324908-22324968)
chr8 (347-403)||(37459439-37459495)
chr8 (347-394)||(38252390-38252437)
chr8 (347-401)||(139122-139176)
chr8 (349-431)||(33190864-33190946)
chr8 (360-429)||(36011959-36012028)
chr8 (365-435)||(43844855-43844924)
chr8 (347-433)||(45197679-45197764)
chr8 (347-416)||(45420891-45420961)
chr8 (345-390)||(27820994-27821039)
chr8 (359-420)||(33508868-33508929)
chr8 (359-395)||(4480435-4480471)
chr8 (347-395)||(12653793-12653841)
chr8 (347-395)||(44790375-44790423)
[»] scaffold0685 (1 HSPs)
scaffold0685 (339-435)||(6345-6441)
[»] chr7 (30 HSPs)
chr7 (328-435)||(45218092-45218199)
chr7 (346-435)||(2849321-2849410)
chr7 (328-435)||(27337805-27337914)
chr7 (311-421)||(30659398-30659507)
chr7 (349-435)||(36070171-36070257)
chr7 (347-435)||(32776049-32776138)
chr7 (365-435)||(23111060-23111130)
chr7 (311-435)||(24288489-24288609)
chr7 (347-431)||(37490571-37490655)
chr7 (360-431)||(2842018-2842089)
chr7 (311-432)||(32971934-32972056)
chr7 (345-390)||(29737626-29737671)
chr7 (347-435)||(29996981-29997070)
chr7 (347-435)||(47238283-47238372)
chr7 (347-395)||(5724661-5724709)
chr7 (347-407)||(7425830-7425890)
chr7 (347-395)||(23058924-23058972)
chr7 (347-395)||(49100456-49100504)
chr7 (365-424)||(33774015-33774073)
chr7 (365-432)||(34064284-34064350)
chr7 (359-422)||(44604443-44604506)
chr7 (347-422)||(45890811-45890886)
chr7 (334-432)||(5068241-5068339)
chr7 (371-421)||(43007974-43008024)
chr7 (353-390)||(18731565-18731602)
chr7 (348-401)||(37157258-37157311)
chr7 (384-429)||(37264385-37264430)
chr7 (345-390)||(40232149-40232194)
chr7 (342-390)||(6392492-6392540)
chr7 (347-395)||(30463122-30463170)
[»] scaffold0250 (1 HSPs)
scaffold0250 (311-396)||(20560-20645)
[»] scaffold0086 (1 HSPs)
scaffold0086 (311-429)||(5890-6006)
[»] chr6 (15 HSPs)
chr6 (360-435)||(3874016-3874091)
chr6 (353-424)||(3166067-3166138)
chr6 (347-435)||(34803657-34803746)
chr6 (365-435)||(20027648-20027718)
chr6 (345-435)||(34442150-34442240)
chr6 (359-435)||(178949-179023)
chr6 (347-401)||(3604553-3604607)
chr6 (142-196)||(24181013-24181067)
chr6 (383-435)||(9354429-9354481)
chr6 (383-435)||(33921458-33921510)
chr6 (348-421)||(7301036-7301107)
chr6 (365-410)||(15371835-15371880)
chr6 (398-435)||(33017948-33017985)
chr6 (347-395)||(15081529-15081577)
chr6 (347-395)||(33109479-33109527)
[»] chr5 (35 HSPs)
chr5 (358-435)||(35968786-35968863)
chr5 (345-435)||(36006847-36006934)
chr5 (301-435)||(5357725-5357859)
chr5 (326-435)||(4044411-4044519)
chr5 (347-431)||(11099431-11099515)
chr5 (347-435)||(4194998-4195088)
chr5 (361-432)||(10044737-10044808)
chr5 (348-432)||(17741126-17741208)
chr5 (365-410)||(32659906-32659951)
chr5 (311-435)||(39060340-39060464)
chr5 (384-435)||(25111139-25111190)
chr5 (384-435)||(25170230-25170281)
chr5 (329-424)||(39183563-39183658)
chr5 (347-429)||(28057784-28057866)
chr5 (347-435)||(5147449-5147538)
chr5 (347-431)||(13016317-13016402)
chr5 (347-431)||(13087695-13087780)
chr5 (359-422)||(4475325-4475386)
chr5 (347-431)||(6610907-6610991)
chr5 (347-406)||(42818998-42819058)
chr5 (347-405)||(15564846-15564905)
chr5 (384-435)||(25108639-25108690)
chr5 (384-435)||(25167731-25167782)
chr5 (352-406)||(43525559-43525611)
chr5 (347-401)||(858435-858489)
chr5 (365-435)||(31090370-31090440)
chr5 (347-431)||(4412451-4412540)
chr5 (347-392)||(13135852-13135897)
chr5 (348-429)||(25814436-25814517)
chr5 (347-415)||(31196405-31196474)
chr5 (371-416)||(39060932-39060977)
chr5 (347-431)||(3725256-3725340)
chr5 (349-413)||(15254853-15254917)
chr5 (371-435)||(15898257-15898321)
chr5 (347-395)||(41184766-41184814)
[»] scaffold0262 (1 HSPs)
scaffold0262 (347-435)||(12388-12477)
[»] scaffold0034 (1 HSPs)
scaffold0034 (347-406)||(98920-98979)
[»] scaffold0227 (1 HSPs)
scaffold0227 (347-418)||(8949-9020)
[»] scaffold0578 (1 HSPs)
scaffold0578 (348-420)||(4413-4484)
[»] scaffold0061 (1 HSPs)
scaffold0061 (345-390)||(10051-10096)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 59)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 104 - 298
Target Start/End: Original strand, 7277259 - 7277455
Alignment:
Q  104 gttccggcgcggtggttgattgattctaaatggttgcagaaggaagagaaacggtaggtggaaaataagctgcggaaggaagataaactgaagcacgatg 203  Q
    ||||| |||| |||| ||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |||||    
T  7277259 gttccagcgcagtggctgattgattctaaatggctgcggaaggaagagaaacggtgggtggaaaataagctgcgaaaggaagataacctgaagcgcgatg 7277358  T
Q  204 accgattctagaatcttttatttaaaaaattgaagaaacttta-cacg-cacccgtgaaatttcgtatggaaacgtccgtactgtataccaattctc 298  Q
    |||||||||||||| ||||||||||| |||||||||||||  | | || | |||||| |||||| |||||||||||| |||||||||| ||||||||    
T  7277359 accgattctagaattttttatttaaacaattgaagaaactgaagcgcgtcgcccgtggaatttcatatggaaacgtctgtactgtatagcaattctc 7277455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 326 - 435
Target Start/End: Original strand, 36232722 - 36232831
Alignment:
Q  326 aatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgata 425  Q
    ||||||||||||| | |||| | ||||| || ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||| |     
T  36232722 aatttaattgagttagtttaacttttcatacagattaagaaaagtgtataaacgaaagagagagaaaaatgattttgagtgtctttgacaagtattggtg 36232821  T
Q  426 cattcttctt 435  Q
    ||||||||||    
T  36232822 cattcttctt 36232831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 345 - 435
Target Start/End: Original strand, 27209919 - 27210009
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||| ||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||    
T  27209919 accattttacacatattaagaaaagtgtataaatgaaagagagagaaaaatgattttgagtgtctttgacaagtattggtgcattcttctt 27210009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 347 - 432
Target Start/End: Original strand, 36326159 - 36326244
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattctt 432  Q
    |||||||||| ||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| ||||| | |||||||    
T  36326159 catttcacacagattaagaaaagtgtataaatgaaagagagagaacaatggttttgagtgtctttgtcaaatattggtgcattctt 36326244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 349 - 432
Target Start/End: Original strand, 5359236 - 5359319
Alignment:
Q  349 tttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattctt 432  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| ||||| | |||||||    
T  5359236 tttcacacagattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtatctgtatcaaatattggtgcattctt 5359319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 435
Target Start/End: Original strand, 31634247 - 31634335
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||  ||||||||||| |||||||||||||||||||||||||||   |||||||||||||| |||||||||| ||||| ||||    
T  31634247 accatttcacatagattaagaaaaatgtataaataaaagagagagaaaaatg--gttgagtgtctttgttaagtattgatgcattcctctt 31634335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 2219402 - 2219490
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||| ||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||| | ||  |||||| ||||||||||    
T  2219402 catttcacactgattaagtaaattgtataaatgaaagagagagaataatgattttgagtgtctttataaaagattgatgcattcttctt 2219490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 435
Target Start/End: Complemental strand, 26040811 - 26040735
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||||||||||| ||||||  ||||||||| |||||||||| |||||||||||||| | ||||||||||    
T  26040811 attaagaaaagtgtataaatgaaagagttagaaaaatggttttgagtgtttttgtcaagtattggtgcattcttctt 26040735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 51049650 - 51049590
Alignment:
Q  358 gattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagt 418  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||    
T  51049650 gattaagaaaagtgtataaataaaagagagagaaaaatggttttgaatgtctttatcaagt 51049590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 14352721 - 14352632
Alignment:
Q  349 tttcacacggattaagaaaagtgtataaataaaagagagagaaaaa---tgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||  ||||||||||||||||||||| ||| |||||||||||   || ||||||||||||||||||||||||| | ||||||||||    
T  14352721 tttcacatagattaagaaaagtgtataaatgaaatagagagaaaaaaaatggttttgagtgtctttgtcaagtattggtgcattcttctt 14352632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 435
Target Start/End: Original strand, 21304742 - 21304848
Alignment:
Q  328 tttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgataca 427  Q
    ||||| ||||||| || | |||||||||   |||||||||| ||||||||| ||||||||| |||| || ||||||||||||||||||||||||||| ||    
T  21304742 tttaactgagtcagttgatcatttcacataaattaagaaaaatgtataaatgaaagagagataaaattg-ttttgagtgtctttgtcaagtattgatgca 21304840  T
Q  428 ttcttctt 435  Q
    || |||||    
T  21304841 tttttctt 21304848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 435
Target Start/End: Original strand, 28706558 - 28706665
Alignment:
Q  328 tttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgataca 427  Q
    ||||| |||| || || ||||||||||||  ||||| |||| ||||||||| ||  ||||||||||||| ||||||||| ||||||||||||||||| ||    
T  28706558 tttaactgagccagttgaccatttcacacatattaaaaaaaatgtataaatgaataagagagaaaaatggttttgagtgcctttgtcaagtattgatgca 28706657  T
Q  428 ttcttctt 435  Q
    || |||||    
T  28706658 tttttctt 28706665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 432
Target Start/End: Original strand, 37280936 - 37281036
Alignment:
Q  328 tttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgataca 427  Q
    ||||| ||||||| || ||||||| |||| ||||||||||| ||| ||||| |||||||||    |||||||||||||||||||||||||||||| | ||    
T  37280936 tttaactgagtcacttgaccatttgacacagattaagaaaaatgtgtaaatgaaagagaga----aatgattttgagtgtctttgtcaagtattggtgca 37281031  T
Q  428 ttctt 432  Q
    |||||    
T  37281032 ttctt 37281036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 435
Target Start/End: Original strand, 47293549 - 47293641
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagagaaa--aatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||||  ||||| |||||| ||||||| ||||||||||| |  ||||||||||||||| |||||||||||||| | ||||||||||    
T  47293549 accatttcacacatattaacaaaagtatataaatgaaagagagagagaggaatgattttgagtgtttttgtcaagtattggtgcattcttctt 47293641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 12267587 - 12267673
Alignment:
Q  349 tttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||  |||||||| ||||||||||| |||||||| ||||||||  |||||||||  ||| |||||||||| ||||||||||||    
T  12267587 tttcacaaagattaagataagtgtataaagaaaagagaaagaaaaatagttttgagtgcatttttcaagtattggtacattcttctt 12267673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 435
Target Start/End: Complemental strand, 16040268 - 16040143
Alignment:
Q  310 gtactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtct 409  Q
    |||||||||| || | ||||||||||||||| ||   |||||||||   |||||||||| | ||| | | || |||||||||||||| |||| |||||||    
T  16040268 gtactccctccgtccaaatttaattgagtcatttgctcatttcacatttattaagaaaaatatattagtcaaggagagagaaaaatggttttaagtgtct 16040169  T
Q  410 ttgtcaagtattgatacattcttctt 435  Q
    |||| |||||||| | ||||||||||    
T  16040168 ttgttaagtattggttcattcttctt 16040143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 435
Target Start/End: Complemental strand, 26583883 - 26583794
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  |||||||||| |||||||| | |||||||||||||||||| |||||||| |||| |||| ||||| | ||||||||||    
T  26583883 catttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgagtttgagtgcctttatcaactattggtgcattcttctt 26583794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 435
Target Start/End: Complemental strand, 37495969 - 37495895
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||||||||||| ||| |||||||||  ||||||||| ||||||| |||||||||| | ||||||||||    
T  37495969 attaagaaaagtgtataaatgaaaaagagagaaa--tgattttgaatgtctttatcaagtattggtgcattcttctt 37495895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 37541066 - 37541155
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  |||||||||| |||||||| | ||||||||||||||||| |||||| ||||||| |||| ||||| | ||||||||||    
T  37541066 catttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatggttttgaatgtctttatcaactattggtgcattcttctt 37541155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 39420722 - 39420666
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattg 422  Q
    |||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||    
T  39420722 aaaagtgtataaatgaaagagagagaaaaataattttgagtgtc-ttgtcaagtattg 39420666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 47792124 - 47792188
Alignment:
Q  326 aatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagaga 390  Q
    ||||||| ||||| |||||| | |||||||| ||||||||||||||||||||| |||||||||||    
T  47792124 aatttaactgagttaatttaacttttcacacagattaagaaaagtgtataaatcaaagagagaga 47792188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 20986544 - 20986624
Alignment:
Q  349 tttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||| ||||||||||||||||||||| |||||      ||||||  |||||||||||||||||||||||| | ||||||||||    
T  20986544 tttcacacagattaagaaaagtgtataaatgaaaga------aaaatggctttgagtgtctttgtcaagtattggtgcattcttctt 20986624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 52830368 - 52830443
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattg 422  Q
    ||||||||||| ||||| |||| ||||||||| || ||||||||||||| ||||||||||  ||||| ||||||||    
T  52830368 catttcacacgtattaaaaaaaatgtataaatgaaggagagagaaaaataattttgagtgcatttgttaagtattg 52830443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 429
Target Start/End: Complemental strand, 32587919 - 32587837
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacatt 429  Q
    ||||||||||  |||||||||| ||||||||| || | ||||||||||| ||||| ||||| ||||| |||||||||| ||||    
T  32587919 catttcacacatattaagaaaaatgtataaatgaaggtgagagaaaaataattttaagtgtttttgttaagtattgatgcatt 32587837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 4203365 - 4203324
Alignment:
Q  172 gctgcggaaggaagataaactgaagcacgatgaccgattcta 213  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  4203365 gctgcggaaggaagataaactgaagcgcgatgaccgattcta 4203324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 407
Target Start/End: Complemental strand, 16451758 - 16451685
Alignment:
Q  334 tgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgt 407  Q
    |||| |||||| |||||||| ||  |||||||||| ||||||||  ||||||||||||||||| ||||||||||    
T  16451758 tgagccaattttccatttcatacatattaagaaaaatgtataaaggaaagagagagaaaaatggttttgagtgt 16451685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 407
Target Start/End: Complemental strand, 16460911 - 16460838
Alignment:
Q  334 tgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgt 407  Q
    |||| |||||| |||||||| ||  |||||||||| ||||||||  ||||||||||||||||| ||||||||||    
T  16460911 tgagccaattttccatttcatacatattaagaaaaatgtataaaggaaagagagagaaaaatggttttgagtgt 16460838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 435
Target Start/End: Original strand, 52382375 - 52382428
Alignment:
Q  382 agagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||    
T  52382375 agagagagagagatgattttgagtgtcttagtcaagtattgatgcattcttctt 52382428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 421
Target Start/End: Complemental strand, 9590679 - 9590592
Alignment:
Q  336 agtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagag--aaaaatgattttgagtgtctttgtcaagtatt 421  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| ||||||||||  || |||| |||| |||| ||||||||||||||    
T  9590679 agtcagttgaccatttcacatagattaagaaaattgtataaatgaaagagagagataataatggttttaagtgcctttgtcaagtatt 9590592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 46880568 - 46880512
Alignment:
Q  348 atttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgag 404  Q
    |||||||||  |||||||||| ||||||||| || ||||||||||||||||||||||    
T  46880568 atttcacacatattaagaaaattgtataaatgaaggagagagaaaaatgattttgag 46880512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 49494117 - 49494165
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||||||    
T  49494117 catttcacacgtattaagaaaaatgtataaatgaaagagagagaaaaat 49494165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 422
Target Start/End: Complemental strand, 50086176 - 50086115
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattg 422  Q
    ||||| |||||||||||| | |||||||||  |||||||||||| |||||||||||||||||||    
T  50086176 attaaaaaaagtgtataagtgaaagagaga--aaaatgattttgtgtgtctttgtcaagtattg 50086115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 24361095 - 24361149
Alignment:
Q  142 gaaggaagagaaacggtaggtggaaaataagctgcggaaggaagataaactgaag 196  Q
    ||||||||||||||||| | |||||||||||||||||| | |||| |||||||||    
T  24361095 gaaggaagagaaacggtggctggaaaataagctgcggaggaaagagaaactgaag 24361149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 435
Target Start/End: Original strand, 27932805 - 27932875
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||| ||||| | |||||||||||||||||  |||||||||| ||||||| ||||| | ||||||||||    
T  27932805 aaaagtatataagtgaaagagagagaaaaatgcgtttgagtgtccttgtcaactattggtgcattcttctt 27932875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 435
Target Start/End: Complemental strand, 46273296 - 46273226
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||| ||||||||| ||  ||| |||||||| ||||||| ||| |||||||||||||||| ||||||||||    
T  46273296 aaaaatgtataaatgaataagatagaaaaataattttgaatgtttttgtcaagtattgatgcattcttctt 46273226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 435
Target Start/End: Complemental strand, 50926883 - 50926813
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||| |||||||  |||||||||||||||||| |||||| ||  |||||||||||||| | ||||||||||    
T  50926883 aaaattgtataagaaaaagagagagaaaaatggttttgaatgcatttgtcaagtattggtgcattcttctt 50926813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 435
Target Start/End: Original strand, 5115814 - 5115867
Alignment:
Q  382 agagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||  | |||||||||||||||||| ||||||||||| ||||||||||    
T  5115814 agagagagagcattgattttgagtgtctttgacaagtattgatgcattcttctt 5115867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 26924073 - 26924162
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  |||||||||| ||||| || | |||||||||||||||||| |||||||| | || |||| ||||| | ||||||||||    
T  26924073 catttcacacttattaagaaaaagtgtaaaagtgaaagagagagaaaaatgagtttgagtgcccttatcaactattggtgcattcttctt 26924162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 432
Target Start/End: Original strand, 29225386 - 29225447
Alignment:
Q  371 gtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattctt 432  Q
    |||||| | |||||| |||||||||||||||||||| |||||| |||||||| | |||||||    
T  29225386 gtataagtgaaagagtgagaaaaatgattttgagtgcctttgttaagtattggtgcattctt 29225447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 29756095 - 29756184
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  |||||||||| |||||||| | |||||||||||||||||  |||||||| | || |||| ||||| | ||||||||||    
T  29756095 catttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcccttatcaactattggtgcattcttctt 29756184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 421
Target Start/End: Complemental strand, 34332264 - 34332188
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaa--tgattttgagtgtctttgtcaagtatt 421  Q
    ||||||||||  |||||||||| ||||||| | |||||||||||||||  ||||||| ||| ||||| |||||||||    
T  34332264 catttcacacatattaagaaaaatgtataagtgaaagagagagaaaaaagtgatttttagtatctttatcaagtatt 34332188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 42926276 - 42926215
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtat 420  Q
    |||||||||| ||||||||| || || |||||||||||||||| ||||| ||||| ||||||    
T  42926276 attaagaaaaatgtataaatgaatgaaagagaaaaatgattttaagtgtttttgttaagtat 42926215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 435
Target Start/End: Original strand, 4466072 - 4466196
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| || | |||||||||||| || ||   ||||||||||  |||||||||| | ||| | | || ||||||||||||||  |||||||  |||    
T  4466072 tactccctccgtcccaatttaattgagccatttgttcatttcacacttattaagaaaaatatattagtgaatgagagagaaaaatgggtttgagtacctt 4466171  T
Q  411 tgtcaagtattgatacattcttctt 435  Q
    ||| |||||||| | ||||||||||    
T  4466172 tgttaagtattggtccattcttctt 4466196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 11425859 - 11425911
Alignment:
Q  383 gagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||||  |||||||||||||||| |||||||| | ||||||||||    
T  11425859 gagagagaaaaatagttttgagtgtctttgttaagtattggtccattcttctt 11425911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 36467149 - 36467197
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| |||||||||| ||||||||| || |||||||||||||    
T  36467149 catttcacacgtattaagaaaaatgtataaatgaatgagagagaaaaat 36467197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 50267392 - 50267440
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| |||||||||| ||||||||| |||| |||||||||||    
T  50267392 catttcacacgtattaagaaaaatgtataaatgaaagtgagagaaaaat 50267440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 50334089 - 50334030
Alignment:
Q  336 agtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||| |||| ||||||| || ||||||||||||||||||||  ||||| ||||||||||    
T  50334089 agtcagtttatcatttcatacagattaagaaaagtgtataaacgaaagaaagagaaaaat 50334030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 52432464 - 52432381
Alignment:
Q  349 tttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattctt 432  Q
    ||||||||  ||||||| || ||||||||| ||  |||||||||||||||||| ||||   |||| |||||||||| |||||||    
T  52432464 tttcacacacattaagacaaatgtataaatgaagaagagagaaaaatgattttaagtgctcttgttaagtattgatgcattctt 52432381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 435
Target Start/End: Original strand, 705321 - 705391
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||| ||||||| | ||||||| |||||||||||||||| ||||||| | |||||||  | ||||||||||    
T  705321 aaaaatgtataagttaaagagaaagaaaaatgattttgaatgtctttattaagtattagtgcattcttctt 705391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 394
Target Start/End: Complemental strand, 38664542 - 38664508
Alignment:
Q  360 ttaagaaaagtgtataaataaaagagagagaaaaa 394  Q
    |||||||||||||||||||||| ||||||||||||    
T  38664542 ttaagaaaagtgtataaataaaggagagagaaaaa 38664508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 3160640 - 3160729
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  |||||||||| |||||||| | ||||||| |||||||||  |||||||| | ||||||| ||||| | |||| |||||    
T  3160640 catttcacacttattaagaaaaagtgtataagtgaaagagaaagaaaaatgggtttgagtgcccttgtcaactattggtgcattattctt 3160729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 28908243 - 28908187
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaa--agagagagaaaaatgatttt 401  Q
    ||||||||||  |||||||||| ||||||||| ||  ||||||||||||||||||||    
T  28908243 catttcacacatattaagaaaaatgtataaatgaaggagagagagaaaaatgatttt 28908187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 423
Target Start/End: Complemental strand, 45049143 - 45049069
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattga 423  Q
    ||||||||||  |||||||||||||||||||  ||  ||||||||||||  |||||||| ||||| |||| ||||||    
T  45049143 catttcacacaaattaagaaaagtgtataaaggaa--agagagaaaaatagttttgagtatctttttcaaatattga 45049069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 46862822 - 46862777
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagaga 390  Q
    |||||||||||| |||||||||||||||| | |||||||| |||||    
T  46862822 accatttcacacagattaagaaaagtgtaaagataaaagaaagaga 46862777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 50777263 - 50777218
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagaga 390  Q
    |||||||||||| |||||||||||||||| | |||||||| |||||    
T  50777263 accatttcacacagattaagaaaagtgtaaagataaaagaaagaga 50777218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 6787401 - 6787353
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| |||||||||| | ||||||  ||||||||||||||||    
T  6787401 catttcacacgtattaagaaaaatatataaacgaaagagagagaaaaat 6787353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 395
Target Start/End: Original strand, 28424279 - 28424327
Alignment:
Q  348 atttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaat 395  Q
    |||||||||  |||||||||| |||||||||||||| ||||||||||||    
T  28424279 atttcacacatattaagaaaaagtgtataaataaaatagagagaaaaat 28424327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Original strand, 52146349 - 52146377
Alignment:
Q  380 aaagagagagaaaaatgattttgagtgtc 408  Q
    |||||||||||||||||||||||||||||    
T  52146349 aaagagagagaaaaatgattttgagtgtc 52146377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Original strand, 52146652 - 52146680
Alignment:
Q  380 aaagagagagaaaaatgattttgagtgtc 408  Q
    |||||||||||||||||||||||||||||    
T  52146652 aaagagagagaaaaatgattttgagtgtc 52146680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 299 - 435
Target Start/End: Complemental strand, 18460690 - 18460554
Alignment:
Q  299 ataataaaatagtactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgat 398  Q
    |||||||||||||||||| || ||||   |||||  |||| ||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||    
T  18460690 ataataaaatagtactccatccgttccggtttaacagagtgaatttaccatttcacacagattaagaaaagtgtataaatgaaagagatagaaaaatgat 18460591  T
Q  399 tttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  18460590 tttgagtgtctttgtcaaatattggtacattcttctt 18460554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 311 - 435
Target Start/End: Complemental strand, 9725068 - 9724944
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| || ||||||||||||||||| |||  ||||||||||  |||||||||||||||||||| ||||||||||| |||||||||||||||  ||    
T  9725068 tactccctccgtcctaatttaattgagtcattttctcatttcacacatattaagaaaagtgtataaatgaaagagagagagaaatgattttgagtgcttt 9724969  T
Q  411 tgtcaagtattgatacattcttctt 435  Q
    | |||||||||| | ||||||||||    
T  9724968 tatcaagtattggtgcattcttctt 9724944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 311 - 435
Target Start/End: Complemental strand, 24356301 - 24356177
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| || | | ||||| |||| |||||| ||||||||||| ||||||||||||||||||||  |||||||||||||| |  ||||||||| |||    
T  24356301 tactccctccgtcccagtttaactgagccaattttccatttcacacagattaagaaaagtgtataaaggaaagagagagaaaactagttttgagtgcctt 24356202  T
Q  411 tgtcaagtattgatacattcttctt 435  Q
    | |||||||||||| ||||||||||    
T  24356201 tttcaagtattgatgcattcttctt 24356177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 328 - 435
Target Start/End: Complemental strand, 43182445 - 43182338
Alignment:
Q  328 tttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgataca 427  Q
    ||||| ||||||| ||| ||||||||||| ||||||||||| ||||||||  ||||||||| |||||| |||||||||||||||||||| ||||| | ||    
T  43182445 tttaactgagtcagttttccatttcacacagattaagaaaaatgtataaaggaaagagagaaaaaaataattttgagtgtctttgtcaaatattggtgca 43182346  T
Q  428 ttcttctt 435  Q
    ||||||||    
T  43182345 ttcttctt 43182338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 345 - 435
Target Start/End: Complemental strand, 9472578 - 9472488
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||||  |||||||||| ||||||||| ||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  9472578 accatttcacacatattaagaaaaatgtataaatgaaagagatagaacaatggtttagagtgtctttgtcaagtattgatacattcttctt 9472488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 311 - 435
Target Start/End: Complemental strand, 7213665 - 7213541
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| || | | |||||||||| || |||  |||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||    
T  7213665 tactccctcggtcccagtttaattgagccattttctcatttcacacagattaagaaaaatgtataaatgaaatagagagaaaaatgattttgagtgcctt 7213566  T
Q  411 tgtcaagtattgatacattcttctt 435  Q
    | |||| ||||| | ||||||||||    
T  7213565 tatcaaatattggtgcattcttctt 7213541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 335 - 435
Target Start/End: Complemental strand, 39807379 - 39807279
Alignment:
Q  335 gagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttct 434  Q
    |||||| || |||||||| ||| ||||||||||| ||||||||| ||||||| ||||||||| ||||||||| |||||| |||||||| | |||||||||    
T  39807379 gagtcagttgaccatttctcacagattaagaaaaatgtataaatcaaagagaaagaaaaatggttttgagtgcctttgtgaagtattggtgcattcttct 39807280  T
Q  435 t 435  Q
    |    
T  39807279 t 39807279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 6685606 - 6685701
Alignment:
Q  328 tttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattga 423  Q
    ||||||||||||| |||| |||||||||  |||||| |||| | ||||||| ||| |||||||||||||||||| | |||||||||||||||||||    
T  6685606 tttaattgagtcagtttatcatttcacatagattaaaaaaaatatataaatgaaatagagagaaaaatgatttttaatgtctttgtcaagtattga 6685701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 315 - 422
Target Start/End: Complemental strand, 28844248 - 28844141
Alignment:
Q  315 ccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtc 414  Q
    ||||| |||| ||||||| ||||  |||||||| ||||| |  ||||||||||| ||||||||| ||||||||| |||||| ||||||| |||||||| |    
T  28844248 ccctccgttccaatttaactgagctaatttaccttttcatatagattaagaaaaatgtataaatgaaagagagataaaaataattttgaatgtctttggc 28844149  T
Q  415 aagtattg 422  Q
    ||||||||    
T  28844148 aagtattg 28844141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 422
Target Start/End: Complemental strand, 36748338 - 36748227
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| || | | ||||| ||||||| ||| |||||||||||  |||||||||||||||||||  ||| ||||||||||||  ||||||||  |||    
T  36748338 tactccctccgtcccagtttaactgagtcagttttccatttcacacatattaagaaaagtgtataaaagaaatagagagaaaaatagttttgagttcctt 36748239  T
Q  411 tgtcaagtattg 422  Q
    | ||||||||||    
T  36748238 tttcaagtattg 36748227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 431
Target Start/End: Original strand, 28925801 - 28925885
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||||| |||||||||| |||||||||||| |||||||||||||  |||| ||||   |||| |||||||||| ||||||    
T  28925801 catttcacacgtattaagaaaaatgtataaataaaggagagagaaaaatagttttaagtgcacttgttaagtattgatgcattct 28925885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 435
Target Start/End: Complemental strand, 314582 - 314493
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  |||||||||| |||||||| | |||||||||| |||||| ||||||||| | || |||| ||||||| ||||||||||    
T  314582 catttcacacttattaagaaaaagtgtataagtgaaagagagaggaaaatggttttgagtgcccttatcaactattgatgcattcttctt 314493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 424
Target Start/End: Complemental strand, 40965168 - 40965091
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgat 424  Q
    ||||||||||| |||||||||| ||||||||| || |||||||||||||  |||| ||||  ||||| ||||||||||    
T  40965168 catttcacacgtattaagaaaaatgtataaatgaaggagagagaaaaatagttttaagtgcatttgttaagtattgat 40965091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 38280149 - 38280237
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  |||||||||| ||||||||  ||| ||||||||||||| ||||||||| |||| | || ||||| | ||||||||||    
T  38280149 catttcacacatattaagaaaaatgtataaaggaaatagagagaaaaatggttttgagtgccttttttaaatattggtgcattcttctt 38280237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 3200038 - 3199983
Alignment:
Q  359 attaagaaaag-tgtataaataaaagagagagaaaaatgattttgagtgtctttgt 413  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||    
T  3200038 attaagaaaagatgtataaatgaaagagagagaaaaatggttttgagtgtcattgt 3199983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 33755407 - 33755336
Alignment:
Q  351 tcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattg 422  Q
    ||||||| ||||||| || ||||||||| || ||||||||||||||||||| |||||  |||| ||||||||    
T  33755407 tcacacgtattaagacaaatgtataaatgaaggagagagaaaaatgattttaagtgttattgttaagtattg 33755336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 422
Target Start/End: Original strand, 37528988 - 37529099
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| || | ||||||| ||||||| ||   ||||||||||  ||||| |||| | ||| | |||| || ||||||||||| |||||||||||||    
T  37528988 tactccctccgtcccaatttaactgagtcatttgttcatttcacacttattaaaaaaaatatattagtaaaggatagagaaaaatggttttgagtgtctt 37529087  T
Q  411 tgtcaagtattg 422  Q
    ||| ||||||||    
T  37529088 tgttaagtattg 37529099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 435
Target Start/End: Original strand, 4282990 - 4283060
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||| ||||||||||||||||||| |||||| || | || |||||||||| | ||||| ||||    
T  4282990 aaaagtgtataagtaaaagagagagaaaaatggttttgaatgcccttatcaagtattggtgcattcctctt 4283060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 431
Target Start/End: Original strand, 18181168 - 18181250
Alignment:
Q  349 tttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    |||||||| ||||||||||||||||||| | | ||||||||||||||| |||| ||||  ||||| | |||||| | ||||||    
T  18181168 tttcacacagattaagaaaagtgtataagtgagagagagagaaaaatggttttaagtgcttttgttatgtattggtgcattct 18181250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 435
Target Start/End: Original strand, 1908408 - 1908535
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgta---taaataaaagagagagaaaaatgattttgagtgt 407  Q
    ||||||||| || | ||||||| ||||| | ||||   |||||||| |||||| |||| ||||   ||||| ||| ||||||||||||| ||||||||||    
T  1908408 tactccctccgtcccaatttaactgagttagtttaaattttcacacagattaaaaaaaatgtactataaatgaaatagagagaaaaatggttttgagtgt 1908507  T
Q  408 ctttgtcaagtattgatacattcttctt 435  Q
    ||||  ||||||||  | ||||||||||    
T  1908508 cttttgcaagtattagtgcattcttctt 1908535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 435
Target Start/End: Complemental strand, 14890469 - 14890383
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  | |||||||| ||||||||| ||||||| |  |||||| |||||||||||||| |||||||||  | ||||||||||    
T  14890469 catttcacacatactaagaaaaatgtataaatgaaagagata--aaaatggttttgagtgtctttatcaagtattagtgcattcttctt 14890383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 43370940 - 43370895
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagaga 390  Q
    |||||||||||| |||||||||||||||| |||||||||| |||||    
T  43370940 accatttcacacagattaagaaaagtgtaaaaataaaagaaagaga 43370895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 733988 - 734040
Alignment:
Q  370 tgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattg 422  Q
    ||||||||| |||||||||||||||||||||||| | | |||||||| |||||    
T  733988 tgtataaatgaaagagagagaaaaatgattttgaatatttttgtcaaatattg 734040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 10988335 - 10988299
Alignment:
Q  371 gtataaataaaagagagagaaaaatgattttgagtgt 407  Q
    |||||||| ||||||||||||||||||||||||||||    
T  10988335 gtataaatgaaagagagagaaaaatgattttgagtgt 10988299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 32556324 - 32556251
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattg 422  Q
    ||||||||||  |||||||||||||||||| | ||  ||||||||||||| |||| ||| || |||||||||||||    
T  32556324 catttcacacatattaagaaaagtgtataagtgaa--agagagaaaaatggttttaagtatccttgtcaagtattg 32556251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 431
Target Start/End: Original strand, 36103266 - 36103338
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    |||||||||| |||| |||| || ||||||||||||||||||| |||||  |||| |||||| ||| ||||||    
T  36103266 attaagaaaaatgtacaaatgaaggagagagaaaaatgattttaagtgttcttgttaagtatcgatgcattct 36103338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 406
Target Start/End: Original strand, 13375141 - 13375200
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtg 406  Q
    ||||||||||| |||||||||| ||||||||| || |||||||| |||| ||||| ||||    
T  13375141 catttcacacgtattaagaaaaatgtataaatgaaggagagagataaataattttaagtg 13375200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 432
Target Start/End: Complemental strand, 31592685 - 31592619
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattctt 432  Q
    |||||||||||| | ||||||||||||||||  ||| ||||||| ||||||||||||| | |||||||    
T  31592685 aaaagtgtataagtgaaagagagagaaaaatagtttcgagtgtc-ttgtcaagtattgctgcattctt 31592619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 8550595 - 8550669
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtatt 421  Q
    ||||||||||  ||| |||||| ||||||| | |||||||||||||| || |||| |||||  ||||||||||||    
T  8550595 catttcacacacatttagaaaaatgtataagtgaaagagagagaaaagtggttttaagtgttcttgtcaagtatt 8550669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 10069538 - 10069612
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtatt 421  Q
    ||||||||||  |||||||||| | ||||| | ||||||||| |||||||||||| |||   |||||||||||||    
T  10069538 catttcacactcattaagaaaaatatataagtgaaagagagataaaaatgattttaagtacttttgtcaagtatt 10069612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 23685101 - 23685039
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtatt 421  Q
    |||||||||| |||||||||||| ||||||||||| |  |||| ||||| ||||| |||||||    
T  23685101 attaagaaaaatgtataaataaaggagagagaaaattagttttaagtgtttttgttaagtatt 23685039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 420
Target Start/End: Original strand, 5007194 - 5007265
Alignment:
Q  348 atttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtat 420  Q
    |||||||||  |||||||||| |||||||| |||||||||||||||| || ||||||||| | |||||||||||    
T  5007194 atttcacacatattaagaaaatgtgtataagtaaaagagagagaaaattg-ttttgagtg-ccttgtcaagtat 5007265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 12949936 - 12949992
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattg 422  Q
    |||| ||||||| | ||||||||| |||||| |||||||||||| |||||||||||||    
T  12949936 aaaaatgtataagtgaaagagagaaaaaaataattttgagtgtc-ttgtcaagtattg 12949992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 28585717 - 28585762
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagaga 390  Q
    |||||||||||| |||||||||||||||| | |||||||| |||||    
T  28585717 accatttcacacagattaagaaaagtgtaaagataaaagaaagaga 28585762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 424
Target Start/End: Original strand, 43950401 - 43950478
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgat 424  Q
    ||||||||||  ||||| |||| ||||||| | ||||||||||||||||  |||| | ||| ||||| ||||||||||    
T  43950401 catttcacacttattaaaaaaaatgtataagtgaaagagagagaaaaatagttttaaatgtttttgttaagtattgat 43950478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 7931435 - 7931479
Alignment:
Q  346 ccatttcacacggattaagaaaagtgtataaataaaagagagaga 390  Q
    ||||||||||| ||||||||||||||||||||  ||| |||||||    
T  7931435 ccatttcacacagattaagaaaagtgtataaaggaaatagagaga 7931479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 10394238 - 10394311
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattg 422  Q
    ||||||||||  |||||||||| ||||||||  || ||||||||||||| ||||| | ||| ||||| ||||||||    
T  10394238 catttcacac--attaagaaaaatgtataaaagaaggagagagaaaaataattttaaatgtttttgttaagtattg 10394311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 431
Target Start/End: Complemental strand, 28572361 - 28572278
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||||  ||||||| || |||||||||||| ||||||| ||||||||||| ||||   |||| |||||||| | ||||||    
T  28572361 catttcacacatattaagacaaatgtataaataaaggagagag-aaaatgattttaagtgctcttgttaagtattggtgcattct 28572278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 43077679 - 43077727
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| ||||||| || ||||||||| || |||||||||||||    
T  43077679 catttcacacgtattaagacaaatgtataaatgaatgagagagaaaaat 43077727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 441
Target Start/End: Complemental strand, 44633346 - 44633216
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| || | | ||||| |||| |||||| ||||||||||| |||||||| ||||||||||| |||||| ||||||||||  |||||||||||||    
T  44633346 tactccctccgtcccagtttaactgagccaattttccatttcacacagattaagataagtgtataaagaaaagaaagagaaaaatagttttgagtgtctt 44633247  T
Q  411 tgtcaagtattgatacattcttcttgatgat 441  Q
    |||||||||||| | |||||||||| |||||    
T  44633246 tgtcaagtattggtgcattcttctttatgat 44633216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 311 - 435
Target Start/End: Original strand, 48400548 - 48400672
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| || ||| ||||||||||||| |||  |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| | ||  ||    
T  48400548 tactccctccgtcctagtttaattgagtcattttctcatttcacacagattaagaaaaatgtataaatgaaagagagagaaaaatgatttttaatgcttt 48400647  T
Q  411 tgtcaagtattgatacattcttctt 435  Q
    | ||||||||||||  |||||||||    
T  48400648 tatcaagtattgatgtattcttctt 48400672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 334 - 435
Target Start/End: Complemental strand, 35029202 - 35029101
Alignment:
Q  334 tgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttc 433  Q
    ||||||| || |||||||||||  ||||||||||||||||||||| ||| ||||||||||||  ||| ||||||||||||||||||||  ||||||||||    
T  35029202 tgagtcagttgaccatttcacatagattaagaaaagtgtataaatgaaaaagagagaaaaatagtttcgagtgtctttgtcaagtattagtacattcttc 35029103  T
Q  434 tt 435  Q
    ||    
T  35029102 tt 35029101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 328 - 435
Target Start/End: Original strand, 35998051 - 35998158
Alignment:
Q  328 tttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgataca 427  Q
    ||||||||||||| |||   ||||| ||| ||||||||||||||||||||| |||| ||  ||||||| ||||||||||||||| |||||||||| ||||    
T  35998051 tttaattgagtcattttctgatttcgcacagattaagaaaagtgtataaatgaaagcgaacgaaaaataattttgagtgtctttatcaagtattggtaca 35998150  T
Q  428 ttcttctt 435  Q
    ||||||||    
T  35998151 ttcttctt 35998158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 435
Target Start/End: Original strand, 34790868 - 34790992
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| ||| | ||||||||||| || |||  |||| |||||  |||||||||||||||||||| |||| ||||||||||||||||||||||  ||    
T  34790868 tactccctccgttttcatttaattgagccattttttcattgcacacatattaagaaaagtgtataaatgaaagtgagagaaaaatgattttgagtgcttt 34790967  T
Q  411 tgtcaagtattgatacattcttctt 435  Q
    | |||||||||  | ||||||||||    
T  34790968 tatcaagtatttgtgcattcttctt 34790992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 435
Target Start/End: Complemental strand, 49401829 - 49401722
Alignment:
Q  328 tttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgataca 427  Q
    ||||| ||||||| ||| ||||||||||  ||||||||||| ||||||||  ||||||||||||||||  |||||| |||| || |||||||||||||||    
T  49401829 tttaactgagtcagttttccatttcacatagattaagaaaaatgtataaagtaaagagagagaaaaatagttttgaatgtccttttcaagtattgataca 49401730  T
Q  428 ttcttctt 435  Q
    || |||||    
T  49401729 ttgttctt 49401722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 435
Target Start/End: Original strand, 55360258 - 55360389
Alignment:
Q  304 aaaatagtactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttga 403  Q
    ||||| ||||||||||||||| |||||||  |||||| || | ||||| |||| ||||||||||| ||||||||  ||||||| || |||||| |  |||    
T  55360258 aaaattgtactccctctgttccaatttaaccgagtcagttgatcattttacacagattaagaaaaatgtataaacgaaagagaaagtaaaatggtggtga 55360357  T
Q  404 gtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||||||||||   ||||||||||    
T  55360358 gtgtctttgtcaagtattggcgcattcttctt 55360389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 435
Target Start/End: Original strand, 39052818 - 39052942
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttac-catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtct 409  Q
    ||||||||| ||| || |||||||||  |||||| | |||||||||| ||||||||||| ||||||||| ||||||| | ||||| || |||||||||||    
T  39052818 tactccctccgttttagtttaattgaa-caattttctcatttcacacagattaagaaaaatgtataaatgaaagagaaaaaaaaaagaatttgagtgtct 39052916  T
Q  410 ttgtcaagtattgatacattcttctt 435  Q
    || |||||||||| | ||||||||||    
T  39052917 ttatcaagtattggtgcattcttctt 39052942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 435
Target Start/End: Complemental strand, 25149642 - 25149518
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| || | ||||||| ||||| ||||| |  |||||||| |||||||||||||||||||  |||||||||||||||||  ||||||||| |||    
T  25149642 tactccctccgtcccaatttaactgagttaattttctttttcacacagattaagaaaagtgtataacgaaaagagagagaaaaatagttttgagtgcctt 25149543  T
Q  411 tgtcaagtattgatacattcttctt 435  Q
    | | |||||||| | ||||| ||||    
T  25149542 ttttaagtattggtgcattcctctt 25149518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 435
Target Start/End: Complemental strand, 28280010 - 28279903
Alignment:
Q  328 tttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgataca 427  Q
    ||||| |||| |||||| ||||||||||  ||||||||||| |||||||| |||||||| ||| ||||  |||||||||||||||| |||||||| | ||    
T  28280010 tttaactgagccaattttccatttcacagagattaagaaaaatgtataaagaaaagagaaagagaaatagttttgagtgtctttgttaagtattggtgca 28279911  T
Q  428 ttcttctt 435  Q
    || |||||    
T  28279910 tttttctt 28279903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 29550672 - 29550757
Alignment:
Q  339 caatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgat 424  Q
    |||||| ||||||||||| ||||||||||| ||||||||  ||||||||||||||||  ||||||||| |||| | ||||||||||    
T  29550672 caattttccatttcacacagattaagaaaaatgtataaaggaaagagagagaaaaatagttttgagtgccttttttaagtattgat 29550757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 431
Target Start/End: Original strand, 38160117 - 38160189
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    |||||||||| |||||||||||| |||||||||||||  |||| |||||||||||||| ||||||| ||||||    
T  38160117 attaagaaaaatgtataaataaaggagagagaaaaattgttttaagtgtctttgtcaaatattgatgcattct 38160189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 435
Target Start/End: Original strand, 42051621 - 42051697
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||||||||||| ||||||| ||||||||| |||| |||||||||  ||||||||| | ||||||||||    
T  42051621 attaagaaaagtgtataaatgaaagagatagaaaaatggtttttagtgtctttagcaagtattggtgcattcttctt 42051697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 20964240 - 20964329
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  |||||||||| |||||||| | |||||||||||||||||| |||| |||||||| |||| ||||| | ||||||||||    
T  20964240 catttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgagtttgcgtgtctttatcaactattggtgcattcttctt 20964329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 441
Target Start/End: Original strand, 30680392 - 30680485
Alignment:
Q  348 atttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttcttgatgat 441  Q
    |||||||||  |||||||||||||||||||| ||| ||||||||  || |||||||||||||||||| | ||||| |  ||||||||| |||||    
T  30680392 atttcacacatattaagaaaagtgtataaattaaatagagagaactataattttgagtgtctttgtcgaatattggtggattcttctttatgat 30680485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 27977289 - 27977217
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    |||||||||| ||||||||||||  |||| ||||||||||||| ||||| ||||| |||||||| | ||||||    
T  27977289 attaagaaaaatgtataaataaattagagtgaaaaatgattttaagtgtttttgttaagtattggtgcattct 27977217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 42670336 - 42670384
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| |||||||||| |||||||||||| |||||||||||||    
T  42670336 catttcacacgtattaagaaaaatgtataaataaatgagagagaaaaat 42670384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 410
Target Start/End: Original strand, 9051930 - 9051993
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| | |||||||||| | |||||||| |||| |||||||||||||||||| ||||||    
T  9051930 catttcacatgtattaagaaaaatatataaatataagaaagagaaaaatgattttgaatgtctt 9051993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 435
Target Start/End: Original strand, 10099659 - 10099766
Alignment:
Q  328 tttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgataca 427  Q
    ||||| ||||||||||| | |||||| || ||||||||| ||||||||||  ||||||| | ||||||  |||||||||| ||| | |||||||| | ||    
T  10099659 tttaactgagtcaattttctatttcatacagattaagaagagtgtataaaggaaagagaaaaaaaaatagttttgagtgtattttttaagtattggtgca 10099758  T
Q  428 ttcttctt 435  Q
    || |||||    
T  10099759 tttttctt 10099766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 424
Target Start/End: Complemental strand, 13719911 - 13719852
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgat 424  Q
    |||||||||||||| ||||||| |||||||||  ||||||||||||||| ||||| ||||    
T  13719911 aaaagtgtataaatgaaagagaaagaaaaatgggtttgagtgtctttgttaagtaatgat 13719852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 429
Target Start/End: Complemental strand, 20294169 - 20294087
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacatt 429  Q
    ||||||||| | |||||||||| |||  ||||||||||||||||||||||||||| |||||| | | |||||||||||| ||||    
T  20294169 catttcacatgtattaagaaaaagtgagtaaataaaagagagagaaaaatgatttggagtgt-tatatcaagtattgatgcatt 20294087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 35909526 - 35909601
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattg 422  Q
    ||||||||||| |||||||||| ||||||||| || || ||| |||||| ||||| ||||| ||||| ||||||||    
T  35909526 catttcacacgtattaagaaaaatgtataaatgaatgaaagataaaaataattttaagtgtatttgttaagtattg 35909601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 16493251 - 16493317
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgt 413  Q
    ||||||||||  ||||||| || ||||||||||||||||||| ||||||| |||| ||||| |||||    
T  16493251 catttcacacatattaagataaatgtataaataaaagagagaaaaaaatggttttaagtgtttttgt 16493317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 435
Target Start/End: Complemental strand, 28330949 - 28330860
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  |||||||||| |||||||| | |||||||||||||||||  |||||||| | || |||| ||||| | ||||||||||    
T  28330949 catttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcccttatcaactattggtgcattcttctt 28330860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 8295183 - 8295135
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||  |||||||||| ||||||||| ||||||||||||||||    
T  8295183 catttcacacaaattaagaaaaatgtataaatgaaagagagagaaaaat 8295135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 431
Target Start/End: Complemental strand, 33047646 - 33047562
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||||  |||||||||| |||||||| |||  ||||||||||||| |||| ||||  ||||| |||||||| || |||||    
T  33047646 catttcacacctattaagaaaaatgtataaacaaagaagagagaaaaatggttttaagtgcttttgttaagtattggtagattct 33047562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 37309840 - 37309768
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    |||||||||| || ||||||||| ||||||||||||||| ||| | |||  |||| |||||||||| ||||||    
T  37309840 attaagaaaaatgcataaataaatgagagagaaaaatgactttaattgttcttgttaagtattgatgcattct 37309768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 11469971 - 11469914
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagag---aaaaatgattttgagtgtctttgt 413  Q
    |||||||||| ||||||||| ||||||||||   |||||| |||||||||||||||||    
T  11469971 attaagaaaattgtataaatgaaagagagagagaaaaaataattttgagtgtctttgt 11469914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 11521490 - 11521547
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagag---aaaaatgattttgagtgtctttgt 413  Q
    |||||||||| ||||||||| ||||||||||   |||||| |||||||||||||||||    
T  11521490 attaagaaaattgtataaatgaaagagagagagaaaaaataattttgagtgtctttgt 11521547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 421
Target Start/End: Original strand, 54729452 - 54729511
Alignment:
Q  362 aagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtatt 421  Q
    ||||||| ||||||||| ||||||||||||||||  |||| ||||| ||||| |||||||    
T  54729452 aagaaaaatgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtatt 54729511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 435
Target Start/End: Complemental strand, 38320047 - 38319977
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||| | |||||||||||||||||  |||||||| | || |||| ||||| | ||||||||||    
T  38320047 aaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcccttatcaactattggtgcattcttctt 38319977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 10309227 - 10309272
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    |||||||||||||| ||||| |||||||||| ||||| ||||||||    
T  10309227 aaaagtgtataaattaaagaaagagaaaaataattttaagtgtctt 10309272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 25902414 - 25902503
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  |||||||||| |||||||| | ||||||  || |||||| |||||||||| ||||| |||||||  | ||||||||||    
T  25902414 catttcacacatattaagaaaaagtgtataagtgaaagaggaagtaaaatggttttgagtgtttttgttaagtattagtgcattcttctt 25902503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 1825199 - 1825247
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||  |||||||||| |||||||||||| |||| ||||||||    
T  1825199 catttcacacatattaagaaaaatgtataaataaaggagatagaaaaat 1825247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 431
Target Start/End: Original strand, 4360361 - 4360445
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||||  ||||||||||  |||||||| || || ||||||||||| |||| ||||  ||||| |||||||| | ||||||    
T  4360361 catttcacacatattaagaaaaaagtataaatgaatgaaagagaaaaatggttttaagtgcttttgttaagtattggtgcattct 4360445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 407
Target Start/End: Complemental strand, 34021191 - 34021131
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgt 407  Q
    ||||||||||  ||| ||| || |||||||||||| ||||||||||||| ||||| |||||    
T  34021191 catttcacacatattgagacaaatgtataaataaaggagagagaaaaataattttcagtgt 34021131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 435
Target Start/End: Complemental strand, 37787088 - 37787027
Alignment:
Q  372 tataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||| ||||||| |||||||  ||| ||||||||| ||||||||||| |||| ||||||||||    
T  37787088 tataagtaaaagaaagagaaa--tgagtttgagtgtgtttgtcaagtagtgatgcattcttctt 37787027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 40020898 - 40020976
Alignment:
Q  347 catttcacacggattaagaaaagtgtata---aataaaagagagagaaaaatgattttgagtgtctttgtcaagtattg 422  Q
    ||||||||||  |||||||||| ||||||   | | || |||||||||||||| |||||| ||| ||||||||||||||    
T  40020898 catttcacacatattaagaaaaatgtatactaagtgaatgagagagaaaaatggttttgaatgtttttgtcaagtattg 40020976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 42132970 - 42132910
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtg 406  Q
    ||||||||||  |||||||||| |||||||| | |||||||||||||||||  ||||||||    
T  42132970 catttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtg 42132910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 311 - 435
Target Start/End: Complemental strand, 51165142 - 51165018
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| || | | |||||||||| || |||   |||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  51165142 tactccctccgtccgagtttaattgagccattttctgatttcacacaaattaagaaaagtgtataaataaaagagagagaaaaataattttgagtgtctt 51165043  T
Q  411 tgtcaagtattgatacattcttctt 435  Q
    | |||||||||| | ||||||||||    
T  51165042 tatcaagtattggtgcattcttctt 51165018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 348 - 435
Target Start/End: Original strand, 54021412 - 54021499
Alignment:
Q  348 atttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||||    
T  54021412 atttcacacagattgagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttatcaaatattgttgcattcttctt 54021499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 328 - 435
Target Start/End: Original strand, 1334715 - 1334822
Alignment:
Q  328 tttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgataca 427  Q
    ||||||||||||| |||  |||||||||| |||||||||||| |||||||| |||||||||||||||| ||||||| || |||| |||||||||| | ||    
T  1334715 tttaattgagtcattttctcatttcacacagattaagaaaagcgtataaatgaaagagagagaaaaataattttgaatgcctttatcaagtattggtgca 1334814  T
Q  428 ttcttctt 435  Q
    ||||||||    
T  1334815 ttcttctt 1334822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 311 - 421
Target Start/End: Complemental strand, 53051216 - 53051106
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| |||| | ||||| ||||||| ||| ||||||||||| ||||||||||||||||||||  ||||||||||||||||  ||||||||| |||    
T  53051216 tactccctccgttccagtttaactgagtcagttttccatttcacacagattaagaaaagtgtataaagtaaagagagagaaaaatagttttgagtgcctt 53051117  T
Q  411 tgtcaagtatt 421  Q
    | |||||||||    
T  53051116 tttcaagtatt 53051106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 53754019 - 53754105
Alignment:
Q  349 tttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||  |||||||| | ||||||||||    
T  53754019 tttcatacggattaaaaaaagtgtataaatgaaatagagagaaaaatgattttgagtgtctttggtaagtattggtgcattcttctt 53754105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 38600759 - 38600847
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||  |||| |||||||||| | ||||||||||    
T  38600759 catttcgcacagattaagaaaagtgtataaatgaaaaagagagaaaaatgattttgagtccctttatcaagtattggtgcattcttctt 38600847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 32977743 - 32977831
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||||||||||||||||||||||  |||||| |||||||||  |||||||||  ||| |||||||||||| |||| |||||    
T  32977743 catttcacacggattaagaaaagtgtataaagtaaagagggagaaaaatagttttgagtgcatttttcaagtattgatgcatttttctt 32977831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 435
Target Start/End: Original strand, 36315706 - 36315774
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||| ||||||||  ||||||| ||||| |||||||||||| |||||||| ||||||||||||    
T  36315706 aaaagtgtataagtaaaagag--agaaaaacgatttcgagtgtctttgttaagtattggtacattcttctt 36315774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 421514 - 421604
Alignment:
Q  142 gaaggaagagaaacggtaggtggaaaataagctgcggaaggaagataaactgaagcacgatgaccgattctagaatcttttatttaaaaaa 232  Q
    ||||||||||||||||| | |||||||||||||||||| | |||| |||||||||  ||||||| |||| ||  || |||||||| |||||    
T  421514 gaaggaagagaaacggtggctggaaaataagctgcggaggaaagagaaactgaagtgcgatgactgattttatcattttttattttaaaaa 421604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 404570 - 404473
Alignment:
Q  135 ggttgcagaaggaagagaaacggtaggtggaaaataagctgcggaaggaagataaactgaagcacgatgaccgattctagaatcttttatttaaaaaa 232  Q
    |||||| ||||||||||||||||| | |||||||||||||||||| | |||| ||||||||   ||||||| |||| ||  || |||||||| |||||    
T  404570 ggttgcggaaggaagagaaacggtggctggaaaataagctgcggaggaaagagaaactgaactgcgatgactgattttatcattttttattttaaaaa 404473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 435
Target Start/End: Complemental strand, 41287393 - 41287328
Alignment:
Q  370 tgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||| | ||||||||||||||||| |||||| | |||||||||||||||||| |||| |||||    
T  41287393 tgtataagtgaaagagagagaaaaatggttttgactatctttgtcaagtattgatgcattattctt 41287328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 48409738 - 48409650
Alignment:
Q  349 tttcacacggattaagaaaagtgtataaataaaagagagagaaaaa--tgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||  |||||||||| ||||||||| ||||||||||| |||  |  ||||||||||||||||||||||||| |  |||||||||    
T  48409738 tttcacacatattaagaaaaatgtataaatgaaagagagagagaaagattgttttgagtgtctttgtcaagtattggtggattcttctt 48409650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 431
Target Start/End: Original strand, 1772073 - 1772143
Alignment:
Q  361 taagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    |||||||| |||||||||||| |||||||||||||| |||| |||||  |||| |||||||| || |||||    
T  1772073 taagaaaaatgtataaataaaggagagagaaaaatggttttaagtgttcttgttaagtattggtatattct 1772143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 21585402 - 21585451
Alignment:
Q  386 agagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||||||||||||||||||| || ||||| | ||||||||||    
T  21585402 agagaaaaatgattttgagtgtctttgttaattattggttcattcttctt 21585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 431
Target Start/End: Complemental strand, 9017955 - 9017871
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||||  ||||| |||| ||||||||| ||||||||||||||||  |||| ||||  ||||| |||||||| | ||||||    
T  9017955 catttcacacatattaaaaaaaatgtataaatgaaagagagagaaaaatagttttaagtgcttttgttaagtattggtgcattct 9017871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 431
Target Start/End: Complemental strand, 33994811 - 33994727
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||||| || ||||||| ||||||||| || ||||||||||||| ||||| ||||   |||| |||||||| | ||||||    
T  33994811 catttcacacgtatcaagaaaaatgtataaatgaaggagagagaaaaataattttaagtgcacttgttaagtattggtgcattct 33994727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 410
Target Start/End: Original strand, 44218987 - 44219051
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||||  |||||||||| |||||||| | ||||| ||||||||||| |||||||||||||    
T  44218987 catttcacacatattaagaaaaagtgtataagtcaaagaaagagaaaaatggttttgagtgtctt 44219051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 431
Target Start/End: Original strand, 14756032 - 14756151
Alignment:
Q  312 actccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtcttt 411  Q
    ||||||||||| |||  |||| ||||||| ||   ||||| ||||  |||||||||| ||||||| |||| ||||||||||||| ||||| ||||   ||    
T  14756032 actccctctgtcctagattaactgagtcatttgctcattttacacatattaagaaaaatgtataattaaaggagagagaaaaataattttaagtgctctt 14756131  T
Q  412 gtcaagtattgatacattct 431  Q
    || ||||| || ||||||||    
T  14756132 gttaagtactggtacattct 14756151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 394
Target Start/End: Original strand, 39364990 - 39365037
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaa 394  Q
    ||||||||||  |||||||||| |||||||||||| ||||||||||||    
T  39364990 catttcacacatattaagaaaaatgtataaataaaggagagagaaaaa 39365037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 432
Target Start/End: Original strand, 55415410 - 55415477
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattctt 432  Q
    |||| |||||||||||| |||||||||||||| |||| | ||| ||||| |||||||| | |||||||    
T  55415410 aaaaatgtataaataaatgagagagaaaaatggttttaactgtttttgttaagtattggtgcattctt 55415477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 2868728 - 2868674
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgatttt 401  Q
    ||||||||||  |||||||||| ||||||||| || |||||||||||||| ||||    
T  2868728 catttcacacatattaagaaaaatgtataaatgaaggagagagaaaaatggtttt 2868674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 17776947 - 17777001
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgatttt 401  Q
    ||||||||||| ||||| |||| ||||||||| || |||||||||||||| ||||    
T  17776947 catttcacacgtattaaaaaaaatgtataaatgaatgagagagaaaaatggtttt 17777001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 19078248 - 19078302
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgatttt 401  Q
    ||||||||||| ||||| |||| ||||||||| || |||||||||||||| ||||    
T  19078248 catttcacacgtattaaaaaaaatgtataaatgaatgagagagaaaaatggtttt 19078302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 435
Target Start/End: Original strand, 29858864 - 29858906
Alignment:
Q  393 aatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||| |||||||||| |||||||||||||| ||||||||||||    
T  29858864 aatggttttgagtgtttttgtcaagtattggtacattcttctt 29858906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 9218297 - 9218236
Alignment:
Q  349 tttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtct 409  Q
    ||||||||  |||||||||| |||||||| | ||||||||||||||||  ||||||||||||    
T  9218297 tttcacacatattaagaaaaagtgtataagtgaaagagagagaaaaatagttttgagtgtct 9218236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 48169990 - 48169945
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagaga 390  Q
    |||||||||||| |||||||||||||||| | |||||||| |||||    
T  48169990 accatttcacacagattaagaaaagtgtaaagataaaagaaagaga 48169945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 50676739 - 50676694
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagaga 390  Q
    |||||||||||| |||||||||||||||| | |||||||| |||||    
T  50676739 accatttcacacagattaagaaaagtgtaaagataaaagaaagaga 50676694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 54014503 - 54014458
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagaga 390  Q
    |||||||||||| |||||||||||||||| | |||||||| |||||    
T  54014503 accatttcacacagattaagaaaagtgtaaagataaaagaaagaga 54014458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 10855148 - 10855100
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| ||||||| || ||||||||| || |||||||||||||    
T  10855148 catttcacacgtattaagataaatgtataaatgaaggagagagaaaaat 10855100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 431
Target Start/End: Original strand, 11251092 - 11251164
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    |||||||||| ||||||||| || |||||| |||||||||||| ||||   |||| |||||||| | ||||||    
T  11251092 attaagaaaaatgtataaatgaatgagagaaaaaaatgattttaagtgctcttgttaagtattggtgcattct 11251164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 32827257 - 32827305
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| |||||||||| ||||||||| || |||||| ||||||    
T  32827257 catttcacacgtattaagaaaaatgtataaatgaaggagagaaaaaaat 32827305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 433
Target Start/End: Original strand, 53583532 - 53583599
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttc 433  Q
    |||||||||||||  ||||||| ||||||||  |||||| ||| || ||||||||||||| ||||||||    
T  53583532 aaaagtgtataaaagaaagagatagaaaaatagttttgaatgtgtt-gtcaagtattgatgcattcttc 53583599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 431
Target Start/End: Original strand, 54122177 - 54122261
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||||  ||||||| || ||||||||| || |||||||||||||  |||| | ||| ||||| |||||||| | ||||||    
T  54122177 catttcacacatattaagacaaatgtataaatgaaggagagagaaaaatagttttaaatgtttttgttaagtattggtgcattct 54122261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 54783117 - 54783069
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    |||| |||||| |||||||||| ||||||||| || |||||||||||||    
T  54783117 cattgcacacgtattaagaaaaatgtataaatgaatgagagagaaaaat 54783069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 311 - 435
Target Start/End: Original strand, 352380 - 352502
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| || | | ||||||||||  | |||| |||||||||| ||||||||||||||||||||||||  |||||||||||| ||||||||||||||    
T  352380 tactccctccgtcccagtttaattgagctagtttatcatttcacacagattaagaaaagtgtataaataaa--agagagaaaaataattttgagtgtctt 352477  T
Q  411 tgtcaagtattgatacattcttctt 435  Q
    ||| |||||||| | ||||||||||    
T  352478 tgttaagtattggtgcattcttctt 352502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 311 - 421
Target Start/End: Original strand, 5878142 - 5878254
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaat--aaaagagagagaaaaatgattttgagtgtc 408  Q
    |||||||||||| ||| ||||| ||| ||||||||||||||||||  |||||||||||||||||||||  || ||||||||||||||| |||| | ||||    
T  5878142 tactccctctgtcctagtttaactgaatcaatttaccatttcacatagattaagaaaagtgtataaatgaaagagagagagaaaaatggttttaaatgtc 5878241  T
Q  409 tttgtcaagtatt 421  Q
    |||||||||||||    
T  5878242 tttgtcaagtatt 5878254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 326 - 435
Target Start/End: Original strand, 40077682 - 40077791
Alignment:
Q  326 aatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgata 425  Q
    ||||||||||||| | || | | |||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |     
T  40077682 aatttaattgagtaagttgagcttttcactcatattaagaaaagtgtataaatgaaagagagaaaaaaatgattttgagtgtctttgtcaagtattggtg 40077781  T
Q  426 cattcttctt 435  Q
    ||||||||||    
T  40077782 cattcttctt 40077791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 29638460 - 29638367
Alignment:
Q  342 tttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||| || ||||||||||||||| | |||| |||||    
T  29638460 tttaccatttcacacagattaagaaaagtgtataaatgaaagaaagagaaaaatggttttgaatgcctttgtcaagtattggttcattattctt 29638367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 311 - 435
Target Start/End: Complemental strand, 28791498 - 28791374
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| || | | ||||| |||| || ||| ||||||||||| ||||||||||||||||||||  ||||||||||||||||  ||||||||| |||    
T  28791498 tactccctccgtcccagtttaactgagccagttttccatttcacacagattaagaaaagtgtataaagtaaagagagagaaaaatagttttgagtgcctt 28791399  T
Q  411 tgtcaagtattgatacattcttctt 435  Q
    | |||||||||| | ||||||||||    
T  28791398 tttcaagtattggtgcattcttctt 28791374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 421
Target Start/End: Complemental strand, 39998336 - 39998243
Alignment:
Q  328 tttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtatt 421  Q
    |||||||||| || |||  ||||||| ||  ||||||||||| |||||||| |||||||||||||||||||||| ||||||||| |||||||||    
T  39998336 tttaattgagccattttctcatttcatacatattaagaaaagagtataaatgaaagagagagaaaaatgattttaagtgtctttatcaagtatt 39998243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 435
Target Start/End: Complemental strand, 14117635 - 14117528
Alignment:
Q  328 tttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgataca 427  Q
    ||||| |||| |||||| ||||||||||  ||||||||||||||||||||  |||||||||||||| |  ||||||||| |||| |||||||||| |  |    
T  14117635 tttaactgagccaattttccatttcacagagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcctttttcaagtattggtgta 14117536  T
Q  428 ttcttctt 435  Q
    ||||||||    
T  14117535 ttcttctt 14117528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 432
Target Start/End: Complemental strand, 14690115 - 14690029
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattctt 432  Q
    ||||||||||  |||||||||| |||||||| | ||||||||||||||||| ||||||||||| || |||| ||||| | |||||||    
T  14690115 catttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatggttttgagtgtccttatcaactattggtgcattctt 14690029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 431
Target Start/End: Complemental strand, 5392203 - 5392119
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||||  ||||||| || ||||||||| || |||||||||||||| |||| ||||  |||||||||||||| | ||||||    
T  5392203 catttcacacctattaagacaaatgtataaatgaaggagagagaaaaatggttttaagtgcttttgtcaagtattggtgcattct 5392119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 433
Target Start/End: Original strand, 32241379 - 32241463
Alignment:
Q  349 tttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttc 433  Q
    ||||||||  ||||||| || ||||||||| || |||||| |||||||||||| |||||  |||| |||||||||| ||||||||    
T  32241379 tttcacacatattaagacaaatgtataaatgaaggagagataaaaatgattttaagtgttcttgttaagtattgatgcattcttc 32241463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 435
Target Start/End: Complemental strand, 41726680 - 41726587
Alignment:
Q  340 aatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||| ||||||||||| ||||||||||| |||||||  || | ||||||||| ||  ||||||||| |||| |||||||||| | ||||||||||    
T  41726680 aattttccatttcacacagattaagaaaaatgtataa--aagaaagagagaaatatagttttgagtgcctttttcaagtattgttgcattcttctt 41726587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 422
Target Start/End: Original strand, 5423129 - 5423192
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattg 422  Q
    ||||||| || || |||| | ||||||||||||||||||||||||||||| |||||||| ||||    
T  5423129 attaagataaatgcataagtgaaagagagagaaaaatgattttgagtgtccttgtcaagcattg 5423192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 435
Target Start/End: Complemental strand, 11637256 - 11637206
Alignment:
Q  384 agagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  11637256 agagagaaaaatg-ttttgagtgtctttgccaagtattgatacattattctt 11637206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 29615952 - 29615898
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgatttt 401  Q
    ||||||||||| |||||||||| ||||||||| || ||||||||||||| |||||    
T  29615952 catttcacacgtattaagaaaaatgtataaatgaaggagagagaaaaataatttt 29615898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 1494200 - 1494289
Alignment:
Q  347 catttcacacggattaag-aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  |||||| |||| ||||||  | |||||| |||||||||||||||||||| | || |||| ||||||| ||||||||||    
T  1494200 catttcacacttattaaggaaaaatgtatatgtgaaagagtgagaaaaatgattttgagtgcccttatcaattattgatgcattcttctt 1494289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 424
Target Start/End: Complemental strand, 28802917 - 28802844
Alignment:
Q  351 tcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgat 424  Q
    ||||||| ||||||| || ||||||||| ||||||||||||||||| |||| ||||   |||| ||||||||||    
T  28802917 tcacacgtattaagacaaatgtataaatgaaagagagagaaaaatggttttaagtgctcttgttaagtattgat 28802844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 407
Target Start/End: Complemental strand, 33743931 - 33743870
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgt 407  Q
    ||||||||||  |||||||||| |||||||||| |||||||||||||||||  |||||||||    
T  33743931 catttcacacttattaagaaaaagtgtataaatgaaagagagagaaaaatgggtttgagtgt 33743870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 2195620 - 2195537
Alignment:
Q  349 tttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattctt 432  Q
    ||||||||  |||||||||| |||||||| | ||||||||||||||||  ||||||||||| |||| |||||||| | |||||||    
T  2195620 tttcacacatattaagaaaaagtgtataagtgaaagagagagaaaaatagttttgagtgtc-ttgttaagtattggtgcattctt 2195537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 22324908 - 22324968
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgt 407  Q
    ||||||||| | |||||||||| ||||||||| || ||||||||||||| ||||| |||||    
T  22324908 catttcacaagtattaagaaaaatgtataaatgaaggagagagaaaaataattttaagtgt 22324968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 37459495 - 37459439
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttga 403  Q
    ||||||||||  |||||||||||||||||||| ||| ||||| ||||||||| ||||    
T  37459495 catttcacacttattaagaaaagtgtataaatgaaaaagagaaaaaaatgatgttga 37459439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 394
Target Start/End: Original strand, 38252390 - 38252437
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaa 394  Q
    ||||||||||| |||||||||| ||||||||| || ||||||||||||    
T  38252390 catttcacacgtattaagaaaaatgtataaatgaaggagagagaaaaa 38252437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 139176 - 139122
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgatttt 401  Q
    ||||||||||  |||||||||| ||||||||| || |||||| ||||||||||||    
T  139176 catttcacacatattaagaaaaatgtataaatgaatgagagataaaaatgatttt 139122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 431
Target Start/End: Original strand, 33190864 - 33190946
Alignment:
Q  349 tttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||  ||||||| || ||||||||| ||  |||||||||||||||||| |||||  |||| ||||||| || ||||||    
T  33190864 tttcacacatattaagacaaatgtataaatgaagaagagagaaaaatgattttaagtgttcttgttaagtattaatgcattct 33190946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 36011959 - 36012028
Alignment:
Q  360 ttaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacatt 429  Q
    ||||||||| |||||||| | ||||||| ||| ||||| ||||||||||| ||||||||||||||| ||||    
T  36011959 ttaagaaaatgtgtataagtgaaagagaaagagaaatggttttgagtgtc-ttgtcaagtattgatgcatt 36012028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 435
Target Start/End: Original strand, 43844855 - 43844924
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||| ||||||| ||||||||||||||||||| |||||||   ||||||||||||||| || | |||||||    
T  43844855 aaaaatgtataagtaaaagagagagaaaaatggttttgag-acctttgtcaagtattggtatactcttctt 43844924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 433
Target Start/End: Complemental strand, 45197764 - 45197679
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttc 433  Q
    ||||||||||   ||||| ||| | ||||||| || |||||| |||||||||||| ||||| ||||| |||||||||| ||||||||    
T  45197764 catttcacacaccttaagcaaaatatataaatgaatgagaga-aaaaatgattttaagtgtttttgttaagtattgatgcattcttc 45197679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 416
Target Start/End: Original strand, 45420891 - 45420961
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaa 416  Q
    ||||||||||  |||||||||| |||||||| | |||||||||||||||||  |||||||| | |||||||    
T  45420891 catttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcccttgtcaa 45420961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 27821039 - 27820994
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagaga 390  Q
    |||||||||||| |||||||||||||||| | |||||||| |||||    
T  27821039 accatttcacacagattaagaaaagtgtaaagataaaagaaagaga 27820994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 33508868 - 33508929
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtat 420  Q
    |||||||||| |||||||||||  |||||| |||||| ||||| |||||  |||||||||||    
T  33508868 attaagaaaaatgtataaataactgagagaaaaaaataattttaagtgttcttgtcaagtat 33508929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 4480435 - 4480471
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  4480435 attaagaaaaatgtataaatgaaagagagagaaaaat 4480471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 12653841 - 12653793
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| |||||||||| ||||||||| ||  ||||||||||||    
T  12653841 catttcacacgtattaagaaaaatgtataaatgaagtagagagaaaaat 12653793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 44790375 - 44790423
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| ||||||| || ||||||||| || |||||||||||||    
T  44790375 catttcacacgtattaagacaaatgtataaatgaaggagagagaaaaat 44790423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 339 - 435
Target Start/End: Original strand, 6345 - 6441
Alignment:
Q  339 caatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||| ||||||||||| ||||||||||| ||||||||  ||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||    
T  6345 caattttccatttcacacagattaagaaaaatgtataaaggaaagagagagagagatgattttgagtgtcttagtcaagtattgatgcattcttctt 6441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 328 - 435
Target Start/End: Original strand, 45218092 - 45218199
Alignment:
Q  328 tttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgataca 427  Q
    ||||| |||| |||||| |||||||||||  |||||||||||||||||||  ||||||||||||||||  ||||||||| |||| |||||||||| | ||    
T  45218092 tttaactgagccaattttccatttcacacaaattaagaaaagtgtataaaggaaagagagagaaaaatagttttgagtgcctttttcaagtattggtgca 45218191  T
Q  428 ttcttctt 435  Q
    ||||||||    
T  45218192 ttcttctt 45218199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 346 - 435
Target Start/End: Complemental strand, 2849410 - 2849321
Alignment:
Q  346 ccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||  |||||||||| ||||||||| ||||||||||||||||  ||||| ||||||||||||||||||| | ||||||||||    
T  2849410 ccatttcacacatattaagaaaaatgtataaatgaaagagagagaaaaatagttttgcgtgtctttgtcaagtattggtgcattcttctt 2849321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 435
Target Start/End: Original strand, 27337805 - 27337914
Alignment:
Q  328 tttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagag--agaaaaatgattttgagtgtctttgtcaagtattgata 425  Q
    ||||| ||||||| || |||||||||||  | ||||||||||||||||||||||||||||  ||| ||||  ||||||||||||||||||||||||| |     
T  27337805 tttaactgagtcagttgaccatttcacataggttaagaaaagtgtataaataaaagagagaaagagaaatagttttgagtgtctttgtcaagtattggtg 27337904  T
Q  426 cattcttctt 435  Q
    |||| |||||    
T  27337905 cattattctt 27337914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 311 - 421
Target Start/End: Original strand, 30659398 - 30659507
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| |||||| ||||| | ||||| ||| ||||||||||| |||||||||||||||| |||  ||||||||||||||||  ||||||||| |||    
T  30659398 tactccctccgttctagtttaact-agtcagttttccatttcacacagattaagaaaagtgtacaaaggaaagagagagaaaaatagttttgagtgcctt 30659496  T
Q  411 tgtcaagtatt 421  Q
    |||||| ||||    
T  30659497 tgtcaaatatt 30659507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 36070257 - 36070171
Alignment:
Q  349 tttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||  ||||||||||| ||||||||| |||||||||| |||||| ||||||||||||||||||| ||||| | |||| |||||    
T  36070257 tttcacatagattaagaaaaatgtataaatgaaagagagaggaaaatggttttgagtgtctttgtcaaatattggtgcattattctt 36070171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 435
Target Start/End: Complemental strand, 32776138 - 32776049
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  |||||||||| |||||||| | || |||||||||||||| ||||||||| |||||| |||||||| | ||||||||||    
T  32776138 catttcacacatattaagaaaaagtgtataagtgaaggagagagaaaaatggttttgagtgcctttgttaagtattggtgcattcttctt 32776049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 435
Target Start/End: Original strand, 23111060 - 23111130
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||| ||||||||| ||| |||||||||||||||||||| ||||||| |||| ||||| | ||||||||||    
T  23111060 aaaaatgtataaatgaaatagagagaaaaatgattttgaatgtctttatcaactattggtgcattcttctt 23111130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 311 - 435
Target Start/End: Complemental strand, 24288609 - 24288489
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    |||||||||||||| | ||||| |||| || ||  ||||||||||| ||||||||||||||||||||  ||  ||||||| ||||  ||||||||| |||    
T  24288609 tactccctctgttccagtttaactgagccagtt--ccatttcacacagattaagaaaagtgtataaagtaa--agagagataaatagttttgagtgcctt 24288514  T
Q  411 tgtcaagtattgatacattcttctt 435  Q
    | |||||||||  | ||||||||||    
T  24288513 tttcaagtatttgtgcattcttctt 24288489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 431
Target Start/End: Original strand, 37490571 - 37490655
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||||   ||||||||| ||||||||| || ||||||||||||||||||| ||||| ||| | |||||||| | ||||||    
T  37490571 catttcacacatgttaagaaaaatgtataaatgaaggagagagaaaaatgattttaagtgttttttttaagtattggtgcattct 37490655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 431
Target Start/End: Original strand, 2842018 - 2842089
Alignment:
Q  360 ttaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||| ||||||||| || |||||||||||||| | || |||||  ||||||||||||||| ||||||    
T  2842018 ttaagaaaaatgtataaatgaaggagagagaaaaatggtgttaagtgttattgtcaagtattgatgcattct 2842089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 432
Target Start/End: Original strand, 32971934 - 32972056
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttac-catttcacacggattaagaaaag-tgtataaataaaagagagagaaaaatgattttgagtgtc 408  Q
    ||||||||| |||| | ||||||||||||| || || ||||||||||  ||||||||||  ||||||| | ||||||||||||||||| ||||||||| |    
T  32971934 tactccctccgttccattttaattgagtca-ttgactcatttcacacttattaagaaaaaatgtataagtgaaagagagagaaaaatggttttgagtgcc 32972032  T
Q  409 tttgtcaagtattgatacattctt 432  Q
     || |||| ||||| | |||||||    
T  32972033 cttatcaactattggtgcattctt 32972056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 29737671 - 29737626
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagaga 390  Q
    |||||||||||| |||||||||||||||| |||||||||| |||||    
T  29737671 accatttcacacagattaagaaaagtgtaaaaataaaagaaagaga 29737626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 29996981 - 29997070
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  |||||||||| |||||||| | ||||||| ||||||||| |||||| |||| |||| || ||||| | ||||||||||    
T  29996981 catttcacacttattaagaaaaagtgtataagtgaaagagaaagaaaaatggttttgaatgtccttgttaattattggtgcattcttctt 29997070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 435
Target Start/End: Complemental strand, 47238372 - 47238283
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  |||||||||| |||||||| | ||||||||||||||||| ||||||||| | || ||||  |||| | ||||||||||    
T  47238372 catttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatggttttgagtgcccttatcaacaattggtgcattcttctt 47238283  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 5724661 - 5724709
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| |||||||||| ||||||||| || |||||||||||||    
T  5724661 catttcacacgtattaagaaaaatgtataaatgaaggagagagaaaaat 5724709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 7425830 - 7425890
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgt 407  Q
    ||||||||||| ||||||| || ||||||||| || |||||||||||||| |||| |||||    
T  7425830 catttcacacgtattaagacaaatgtataaatgaatgagagagaaaaatggttttaagtgt 7425890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 23058972 - 23058924
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| |||||||||| | ||||||| ||||||||||||||||    
T  23058972 catttcacacgtattaagaaaaatatataaatgaaagagagagaaaaat 23058924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 49100456 - 49100504
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| |||||||||| ||||||||| ||||| ||||||||||    
T  49100456 catttcacacgtattaagaaaaatgtataaatgaaagacagagaaaaat 49100504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 424
Target Start/End: Original strand, 33774015 - 33774073
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgat 424  Q
    |||||||||||| | ||||||||||||||||  ||||||||||| |||| ||||||||||    
T  33774015 aaaagtgtataagtgaaagagagagaaaaatagttttgagtgtc-ttgttaagtattgat 33774073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 432
Target Start/End: Complemental strand, 34064350 - 34064284
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattctt 432  Q
    |||||||||||||| ||| ||||||||||||  ||||||||||| |||| |||||||| | |||||||    
T  34064350 aaaagtgtataaatgaaatagagagaaaaatagttttgagtgtc-ttgttaagtattggtgcattctt 34064284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 422
Target Start/End: Original strand, 44604443 - 44604506
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattg 422  Q
    ||||||| || ||||||||| || ||||||||||||||||||| |||||  |||| ||||||||    
T  44604443 attaagacaaatgtataaatgaaggagagagaaaaatgattttaagtgttcttgttaagtattg 44604506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 45890811 - 45890886
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattg 422  Q
    ||||||||||| |||||||||| ||||||||  || |||||||||||||| |||| | ||  ||||| ||||||||    
T  45890811 catttcacacgtattaagaaaaatgtataaaagaaggagagagaaaaatggttttaaatgcttttgttaagtattg 45890886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 432
Target Start/End: Original strand, 5068241 - 5068339
Alignment:
Q  334 tgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattctt 432  Q
    ||||||| || ||||||||  ||  |||||||||||||||||||| ||||| ||| ||||||  | |||||||| ||| | |||||||| | |||||||    
T  5068241 tgagtcagttgaccatttcgtacaaattaagaaaagtgtataaatgaaagaaagaaaaaaatagtattgagtgtttttattaagtattggtgcattctt 5068339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 43008024 - 43007974
Alignment:
Q  371 gtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtatt 421  Q
    |||||| | |||||||| |||||||  ||||||||||||||||||||||||    
T  43008024 gtataagtgaaagagagggaaaaatagttttgagtgtctttgtcaagtatt 43007974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 18731602 - 18731565
Alignment:
Q  353 acacggattaagaaaagtgtataaataaaagagagaga 390  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  18731602 acacggattaagaaaactgtataaatgaaagagagaga 18731565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 401
Target Start/End: Complemental strand, 37157311 - 37157258
Alignment:
Q  348 atttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgatttt 401  Q
    |||||||||| |||||||||| |||||| || || ||||||||||||| |||||    
T  37157311 atttcacacgtattaagaaaaatgtatagatgaaggagagagaaaaataatttt 37157258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 37264430 - 37264385
Alignment:
Q  384 agagagaaaaatgattttgagtgtctttgtcaagtattgatacatt 429  Q
    ||||||||||||| ||||||||| | ||||||||||||||| ||||    
T  37264430 agagagaaaaatggttttgagtgcccttgtcaagtattgatgcatt 37264385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 40232149 - 40232194
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagaga 390  Q
    |||||||||||| |||||||||||||||| | |||||||| |||||    
T  40232149 accatttcacacagattaagaaaagtgtaaagataaaagaaagaga 40232194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 6392540 - 6392492
Alignment:
Q  342 tttaccatttcacacggattaagaaaagtgtataaataaaagagagaga 390  Q
    ||||||||||||||| |||||||||||||||| | || ||||| |||||    
T  6392540 tttaccatttcacacagattaagaaaagtgtaaagatgaaagaaagaga 6392492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 30463170 - 30463122
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    |||||||| || |||||||||| ||||||||| || |||||||||||||    
T  30463170 catttcacgcgtattaagaaaaatgtataaatgaatgagagagaaaaat 30463122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 20645 - 20560
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatg 396  Q
    ||||||||| || | ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||  ||||||||||||||||    
T  20645 tactccctccgtcccaatttaattgagtcagtttaccatttcacacagattaagaaaaatgtataaatggaagagagagaaaaatg 20560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 429
Target Start/End: Complemental strand, 6006 - 5890
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    |||||||||| ||| | || || ||||||| |||   |||||||||  ||||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  6006 tactccctctattccagttgaactgagtcattttcttatttcacacaaattaagaaaagtgtataaataaaagagaga--aaaatgatcttgagtgtctt 5909  T
Q  411 tgtcaagtattgatacatt 429  Q
    | |||||||||||| ||||    
T  5908 tatcaagtattgatgcatt 5890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 3874016 - 3874091
Alignment:
Q  360 ttaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | |||| |||||    
T  3874016 ttaaaaaaagtgtataaatgaaagagagaaaaaaatgattttgagtgtctttgtcaagtattggtgcattattctt 3874091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 353 - 424
Target Start/End: Original strand, 3166067 - 3166138
Alignment:
Q  353 acacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgat 424  Q
    |||| |||||| |||||||||||||| ||||||||||||||||  ||||||||||||||  |||||||||||    
T  3166067 acacagattaaaaaaagtgtataaatgaaagagagagaaaaatagttttgagtgtctttaacaagtattgat 3166138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 34803657 - 34803746
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  |||||||||| |||||||||  |||||||||| |||||| |||||||||||||| |||| ||||||| ||||| ||||    
T  34803657 catttcacacttattaagaaaaagtgtataaaggaaagagagaggaaaatggttttgagtgtctttatcaactattgatgcattcctctt 34803746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 435
Target Start/End: Complemental strand, 20027718 - 20027648
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||| | ||||| | || ||||||||||||||||||||||| |||||||| | ||||||||||    
T  20027718 aaaagtgtataagtgaaagaaatagcaaaatgattttgagtgtctttgttaagtattggtgcattcttctt 20027648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 435
Target Start/End: Complemental strand, 34442240 - 34442150
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||| ||||||||||  ||| ||||| ||||||||| ||||||  |||||| |||| ||||| ||||||| | ||||||||||    
T  34442240 accatttcacacagattaagaaacatgtgtaaattaaagagagaaaaaaatagttttgattgtccttgtctagtattggtgcattcttctt 34442150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 435
Target Start/End: Original strand, 178949 - 179023
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||| ||||||||||||||||  |||||||||||||| ||| |||||||||| |||| ||  |||||||||    
T  178949 attaagaaaaatgtataaataaaagag--agaaaaatgattttaagtttctttgtcaaatattaatgtattcttctt 179023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 3604553 - 3604607
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgatttt 401  Q
    ||||||||||  ||||||| || ||||||||||||||||||||||||||| ||||    
T  3604553 catttcacacatattaagacaaatgtataaataaaagagagagaaaaatggtttt 3604607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 24181067 - 24181013
Alignment:
Q  142 gaaggaagagaaacggtaggtggaaaataagctgcggaaggaagataaactgaag 196  Q
    ||||||||||||||||| | |||||||||||||||||| | |||| |||||||||    
T  24181067 gaaggaagagaaacggtggctggaaaataagctgcggaggaaagagaaactgaag 24181013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 9354429 - 9354481
Alignment:
Q  383 gagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||||| |||||||||||||||| || ||||| | ||||||||||    
T  9354429 gagagagaaaaatggttttgagtgtctttgttaaatattggtccattcttctt 9354481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 33921458 - 33921510
Alignment:
Q  383 gagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||||| |||||||||| ||||| |||||||| | ||||||||||    
T  33921458 gagagagaaaaatggttttgagtgtgtttgttaagtattggtccattcttctt 33921510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 7301036 - 7301107
Alignment:
Q  348 atttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtatt 421  Q
    |||||||||| |||||||||| ||||||||||||   |||||||||||  |||| ||||| ||||| |||||||    
T  7301036 atttcacacgtattaagaaaaatgtataaataaa--tgagagaaaaatagttttaagtgtgtttgttaagtatt 7301107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 15371835 - 15371880
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    |||||||||||| | |||| |||||||||||| |||||||||||||    
T  15371835 aaaagtgtataagtgaaagcgagagaaaaatggttttgagtgtctt 15371880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Original strand, 33017948 - 33017985
Alignment:
Q  398 ttttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  33017948 ttttgagtgtctttgtcaagtattggtgcattcttctt 33017985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 15081577 - 15081529
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| |||||||||| ||||||||| || | |||||||||||    
T  15081577 catttcacacgtattaagaaaaatgtataaatgaaggtgagagaaaaat 15081529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 33109527 - 33109479
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| |||||||||| |||||| || || |||||||||||||    
T  33109527 catttcacacgtattaagaaaaatgtatagatgaatgagagagaaaaat 33109479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 435
Target Start/End: Complemental strand, 35968863 - 35968786
Alignment:
Q  358 gattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||| |||||||||||||| ||||||| ||||||||  ||||||||||||||||||||||||  ||||||||||||    
T  35968863 gattaaaaaaagtgtataaatgaaagagaaagaaaaatagttttgagtgtctttgtcaagtattagtacattcttctt 35968786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 345 - 435
Target Start/End: Original strand, 36006847 - 36006934
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||||||||| ||||||||||| ||||||||||||||||||   |||||| |||| |||||||||||||||||||  | ||||||||||    
T  36006847 accatttcacacagattaagaaaaatgtataaataaaagagag---aaaatggttttaagtgtctttgtcaagtatttgtgcattcttctt 36006934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 435
Target Start/End: Original strand, 5357725 - 5357859
Alignment:
Q  301 aataaaatagtactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattt 400  Q
    |||||| |||||||||||| || | |||||||||||  || ||   |||| |||||  |||||||||| | ||| | | || |||||||||||||| |||    
T  5357725 aataaactagtactccctccgtcccaatttaattgaaccatttgctcattacacacttattaagaaaaatatattagtgaaggagagagaaaaatggttt 5357824  T
Q  401 tgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||||| |||||||| | ||||||||||    
T  5357825 tgagtgtctttgttaagtattggttcattcttctt 5357859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 435
Target Start/End: Original strand, 4044411 - 4044519
Alignment:
Q  326 aatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgata 425  Q
    ||||||||||||||| |||   ||||||||| ||||||||||||||||||||| ||| ||| | ||||| |||||||| ||  ||| |||||||||| |     
T  4044411 aatttaattgagtcattttttgatttcacacagattaagaaaagtgtataaatgaaa-agaaaaaaaaaagattttgaatgcttttatcaagtattggtg 4044509  T
Q  426 cattcttctt 435  Q
    ||||||||||    
T  4044510 cattcttctt 4044519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 431
Target Start/End: Original strand, 11099431 - 11099515
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||||  |||||||||| ||||||||| ||||||||||||||||  |||| ||||| ||||| |||||||| | ||||||    
T  11099431 catttcacacatattaagaaaaatgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtattggtgcattct 11099515  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 435
Target Start/End: Complemental strand, 4195088 - 4194998
Alignment:
Q  347 catttcacacggattaagaaaa--gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  ||||||||||  |||||||| ||||||||||||||||||| ||||||||| | || | || ||||||| ||||||||||    
T  4195088 catttcacacttattaagaaaaaagtgtataagtaaaagagagagaaaaatggttttgagtgcccttatgaactattgatgcattcttctt 4194998  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 432
Target Start/End: Complemental strand, 10044808 - 10044737
Alignment:
Q  361 taagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattctt 432  Q
    |||||||||||||||||  ||| ||||||||||||  |||||||||| ||| |||||||||||| |||||||    
T  10044808 taagaaaagtgtataaaggaaatagagagaaaaatagttttgagtgtatttttcaagtattgatgcattctt 10044737  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 17741126 - 17741208
Alignment:
Q  348 atttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattctt 432  Q
    |||| |||| |||||| |||||||||||||| ||||||  ||||||||  ||||||||| |||||| |||||||||| |||||||    
T  17741126 attttacacagattaaaaaaagtgtataaatgaaagag--agaaaaatagttttgagtgcctttgttaagtattgatgcattctt 17741208  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 410
Target Start/End: Complemental strand, 32659951 - 32659906
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||    
T  32659951 aaaagtgtataaatgaaagagaaagaaaaatgattttgagtgtctt 32659906  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 435
Target Start/End: Original strand, 39060340 - 39060464
Alignment:
Q  311 tactccctctgttctaatttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctt 410  Q
    ||||||||| |||| |||||||||||  || ||   ||||||||||  |||||||||| | ||| | | || |||||||||||||| |||||||||  ||    
T  39060340 tactccctccgttccaatttaattgaaccatttgctcatttcacacttattaagaaaaatatattagtgaaggagagagaaaaatggttttgagtgcatt 39060439  T
Q  411 tgtcaagtattgatacattcttctt 435  Q
    ||| |||||||| | ||||||||||    
T  39060440 tgttaagtattggtccattcttctt 39060464  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 435
Target Start/End: Original strand, 25111139 - 25111190
Alignment:
Q  384 agagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||||  ||||||||||||||||||||||||| | ||||||||||    
T  25111139 agagagaaaaatagttttgagtgtctttgtcaagtattgctgcattcttctt 25111190  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 435
Target Start/End: Original strand, 25170230 - 25170281
Alignment:
Q  384 agagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||||  ||||||||||||||||||||||||| | ||||||||||    
T  25170230 agagagaaaaatagttttgagtgtctttgtcaagtattgctgcattcttctt 25170281  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 424
Target Start/End: Original strand, 39183563 - 39183658
Alignment:
Q  329 ttaattgagtcaatttaccatttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgat 424  Q
    |||| ||||||| ||  |||||||||||  |||||||||| ||||||||| ||| ||||| |||||||||||| ||||  || || ||||||||||    
T  39183563 ttaagtgagtcatttgtccatttcacacatattaagaaaaatgtataaatgaaaaagagataaaaatgattttaagtgctttcgttaagtattgat 39183658  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 429
Target Start/End: Original strand, 28057784 - 28057866
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacatt 429  Q
    ||||||||||| | |||||||| ||||||||| || ||||||||||||| ||||| | |||  |||| |||||||||| ||||    
T  28057784 catttcacacgtactaagaaaaatgtataaatgaaggagagagaaaaataattttaaatgtacttgttaagtattgatgcatt 28057866  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 5147449 - 5147538
Alignment:
Q  347 catttcacacggattaagaaaag-tgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||  ||||||||||  | ||||| | ||||| ||||||||||||||||||||||| || |||| ||||| | ||||||||||    
T  5147449 catttcacacttattaagaaaaaatatataagtgaaagaaagagaaaaatgattttgagtgtccttatcaactattggtgcattcttctt 5147538  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 431
Target Start/End: Original strand, 13016317 - 13016402
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||||  |||||||||| ||||| || | |||||||||||||||||| |||||||||| || |||| ||||| | ||||||    
T  13016317 catttcacacttattaagaaaaagtgtaaaagtgaaagagagagaaaaatgagtttgagtgtccttatcaactattggtgcattct 13016402  T

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Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 431
Target Start/End: Original strand, 13087695 - 13087780
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||||  |||||||||| ||||| || | |||||||||||||||||| |||||||||| || |||| ||||| | ||||||    
T  13087695 catttcacacttattaagaaaaagtgtaaaagtgaaagagagagaaaaatgagtttgagtgtccttatcaactattggtgcattct 13087780  T

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Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 422
Target Start/End: Complemental strand, 4475386 - 4475325
Alignment:
Q  359 attaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattg 422  Q
    |||||||||||||||||| | ||||| ||||||||||  | ||||||||| |||||||||||||    
T  4475386 attaagaaaagtgtataagtgaaagaaagagaaaaat--tgttgagtgtccttgtcaagtattg 4475325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 431
Target Start/End: Complemental strand, 6610991 - 6610907
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    |||||||||  ||||||||||| ||||| ||| || ||||||||||||||| ||| ||||| ||| | |||||||| | ||||||    
T  6610991 catttcacatagattaagaaaaatgtatcaatgaaggagagagaaaaatgagtttaagtgtttttattaagtattggtgcattct 6610907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 42819058 - 42818998
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtg 406  Q
    ||||||||||  |||||||||| |||||||| ||||||||| ||||||||| |||||||||    
T  42819058 catttcacacttattaagaaaaagtgtataagtaaaagagaaagaaaaatggttttgagtg 42818998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 405
Target Start/End: Original strand, 15564846 - 15564905
Alignment:
Q  347 catttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagt 405  Q
    ||||||||||  |||||||||| |||||||| | |||||||||||||||| |||||||||    
T  15564846 catttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaataattttgagt 15564905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 435
Target Start/End: Complemental strand, 25108690 - 25108639
Alignment:
Q  384 agagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||||  |||||||||||||||| |||||||| | ||||||||||    
T  25108690 agagagaaaaatagttttgagtgtctttgttaagtattgctgcattcttctt 25108639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 435
Target Start/End: Complemental strand, 25167782 - 25167731
Alignment:
Q  384 agagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||||  |||||||||||||||| |||||||| | ||||||||||    
T  25167782 agagagaaaaatagttttgagtgtctttgttaagtattgctgcattcttctt 25167731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 406
Target Start/End: Complemental strand, 43525611 - 43525559
Alignment:
Q  352 cacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtg 406  Q
    ||||| ||||||||||||||||||||  ||  |||||||||||||||||||||||    
T  43525611 cacacagattaagaaaagtgtataaacgaa--agagagaaaaatgattttgagtg 43525559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 858489 - 858435
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgatttt 401  Q
    ||||||||||  |||||||||| |||||||||||| |||||| ||||||| ||||    
T  858489 catttcacacatattaagaaaaatgtataaataaaggagagaaaaaaatggtttt 858435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 435
Target Start/End: Complemental strand, 31090440 - 31090370
Alignment:
Q  365 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||| ||||||| | ||| ||||||||||||||||||||||| | || |||| ||||| | ||||||||||    
T  31090440 aaaaatgtataagtgaaaaagagagaaaaatgattttgagtgcccttatcaactattggtgcattcttctt 31090370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 431
Target Start/End: Complemental strand, 4412540 - 4412451
Alignment:
Q  347 catttcacacggattaagaaaag-----tgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||||| |||||||||||     ||||||||| || |||||||||||||||| || ||| |  |||| |||||||||| ||||||    
T  4412540 catttcacacgtattaagaaaagaaaaatgtataaatgaaggagagagaaaaatgatattaagtctacttgttaagtattgatgcattct 4412451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 13135897 - 13135852
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaa 392  Q
    ||||||||||| |||||||||| ||||||||| || ||||||||||    
T  13135897 catttcacacgtattaagaaaactgtataaatgaaggagagagaaa 13135852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 429
Target Start/End: Complemental strand, 25814517 - 25814436
Alignment:
Q  348 atttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacatt 429  Q
    |||||||||| |||||||||| || |||||| || |||||||||||||  |||| ||||   |||| |||||||| ||||||    
T  25814517 atttcacacgtattaagaaaaatgcataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattggtacatt 25814436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 31196474 - 31196405
Alignment:
Q  347 catttcacacggattaagaaaag-tgtataaataaaagagagagaaaaatgattttgagtgtctttgtca 415  Q
    ||||||||||  ||||||||||  ||||||||| ||||||| ||||||||  ||||||||||| ||||||    
T  31196474 catttcacacttattaagaaaatatgtataaatgaaagagatagaaaaatagttttgagtgtccttgtca 31196405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 39060932 - 39060977
Alignment:
Q  371 gtataaataaaagagagagaaaaatgattttgagtgtctttgtcaa 416  Q
    |||||| | |||||||||||||||||| |||||||||| |||||||    
T  39060932 gtataagtgaaagagagagaaaaatgagtttgagtgtccttgtcaa 39060977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 431
Target Start/End: Complemental strand, 3725340 - 3725256
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattct 431  Q
    ||||||||||  |||||||||| ||||||||  || |||||||||||||| |||| ||||   |||| |||||||| | ||||||    
T  3725340 catttcacacatattaagaaaaatgtataaaggaaggagagagaaaaatggttttaagtgctattgttaagtattggtgcattct 3725256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 413
Target Start/End: Complemental strand, 15254917 - 15254853
Alignment:
Q  349 tttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgt 413  Q
    ||||||||| |||||||||| |||||||||  | || | |||||||||||||| ||||| |||||    
T  15254917 tttcacacgtattaagaaaaatgtataaatggaggaaaaagaaaaatgattttaagtgtttttgt 15254853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 15898321 - 15898257
Alignment:
Q  371 gtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    |||||| | |||||||||||||||||| ||| |||||| || | || ||||||| ||||||||||    
T  15898321 gtataagtgaaagagagagaaaaatgagtttaagtgtccttattaactattgatgcattcttctt 15898257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 41184814 - 41184766
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaat 395  Q
    ||||||||||| |||||||||| ||||||||| || |||| ||||||||    
T  41184814 catttcacacgtattaagaaaaatgtataaatgaaggagaaagaaaaat 41184766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 12388 - 12477
Alignment:
Q  347 catttcacacggattaagaaaagt-gtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtattgatacattcttctt 435  Q
    ||||||||||| ||||||||||   |||||||| |||||||| ||| |||| ||||||||||||||||||||||||  | ||||||||||    
T  12388 catttcacacgtattaagaaaaaacgtataaatgaaagagagtgaataatggttttgagtgtctttgtcaagtattagtgcattcttctt 12477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 98979 - 98920
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtg 406  Q
    ||||||||||  |||||||||| ||||||||| || ||||||||||||||||||| ||||    
T  98979 catttcacacatattaagaaaaatgtataaatgaatgagagagaaaaatgattttaagtg 98920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 418
Target Start/End: Complemental strand, 9020 - 8949
Alignment:
Q  347 catttcacacggattaagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagt 418  Q
    ||||||||||  |||||||||| ||||||||| ||  |||||||||||| ||||| ||||| ||||| ||||    
T  9020 catttcacacatattaagaaaaatgtataaatgaagaagagagaaaaataattttaagtgtttttgttaagt 8949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 420
Target Start/End: Complemental strand, 4484 - 4413
Alignment:
Q  348 atttcacacggattaagaaaa-gtgtataaataaaagagagagaaaaatgattttgagtgtctttgtcaagtat 420  Q
    |||||||||  |||||||||| |||||||| |||||||||||||||| || ||||||||| | |||||||||||    
T  4484 atttcacacatattaagaaaatgtgtataagtaaaagagagagaaaattg-ttttgagtg-ccttgtcaagtat 4413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 10051 - 10096
Alignment:
Q  345 accatttcacacggattaagaaaagtgtataaataaaagagagaga 390  Q
    |||||||||||| |||||||||||||||| | |||||||| |||||    
T  10051 accatttcacacagattaagaaaagtgtaaagataaaagaaagaga 10096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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